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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072560 ID=TCONS_00072560|Name=TCONS_00072560|organism=Clytia hemisphaerica|type=transcript|length=740bp
gaaccAGTCACTTCTCGAACACTCAAAATCACAAGTCTGGGAAAACAACC
AAACCAGCCCTTATCCAAACCATCAATGGAAGATGACAGGGCTATCAATG
GTGAATCGGAAATTGGAGAACCAGAAAACGAAGAACCATCTGCCAAAAAA
ACCAAGATCGTTAAGACTTGCCAACACTGTGAAGCACCAATAAGTATAAA
TGCTAGTCAGAAGTGTGCTAATTGtggaaaaaagcaaaacaagTGCTGCC
AACATTGTATGAAACCCATGACTTCAAATGCAGCCAAACAATGCCATCTA
TGTGGTAAAAGGCAGTTGACAAAGGCTGAAAGGATGGGAACCCTCGATGA
CGCTGGCCCAAAAGGAACTATCGATCAAAGTGCTCAAAGATCCATAATTA
GAACGAGACTCAATCTCCTccacaaaaaggaaaataatcaTTGTATCGTT
CTTTACTTGAGTGGAGAACAACGGATACACGTGGACAGTTACGCCACGCC
AGGCTTTGCGAAGCATTTTATGGAGGGGNaaaattattttcatttgttga
CCCTTTTAATTTTAGATTCCTTTCTTGAACCAACTCAAAACCTCTGTCCG
TCTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTACCGGCCA
ACCATCAACCTCANAAAGCATTTTATGGAGGGGCTATCAATCGGTGGCAA
TCTTTTTGGAGATGTCATCAAAGACACCTTTAAAACTGCA Run BLAST on NCBI protein sequence of TCONS_00072560-protein >TCONS_00072560-protein ID=TCONS_00072560-protein|Name=TCONS_00072560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
EPVTSRTLKITSLGKQPNQPLSKPSMEDDRAINGESEIGEPENEEPSAKK
TKIVKTCQHCEAPISINASQKCANCGKKQNKCCQHCMKPMTSNAAKQCHL
CGKRQLTKAERMGTLDDAGPKGTIDQSAQRSIIRTRLNLLHKKENNHCIV
LYLSGEQRIHVDSYATPGFAKHFMEGXNYFHLLTLLILDSFLEPTQNLCP
SVPVQSISTRSCSTTGQPSTSXSILWRGYQSVAIFLEMSSKTPLKL Run BLAST on NCBI transcript from alignment at scaffold_8:137833..142029- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072560 ID=TCONS_00072560|Name=TCONS_00072560|organism=Clytia hemisphaerica|type=transcript|length=4197bp|location=Sequence derived from alignment at scaffold_8:137833..142029- (Clytia hemisphaerica)
GAACCAGTCACTTCTCGAACACTCAAAATCACAAGTCTGGGAAAACAACC
AAACCAGCCCTTATCCAAACCATCAATGGAAGGTAAACATTTGTTTCTTT
ATCCAAGTAGAGGCTGAAATGCTGAATTTCATGCACCATTTTTTCTCCAA
AGGCTTTTTAATTTCGAATCTTATAAAAGCAACAGAGTCTTACTTAAATG
TATCATGATAGACTTGAAACGACATACCGTTCCGTTCTTTTCTCAGATGT
ATGGTGAGAAATTAATTTTGACAGATCAATAGATTTCTATTCTGTTCTGT
TTACAAATACTTAACTTCCTGTTTTATGTGAAACTTAGGATGTGAACTTC
ACCAAAACAAGCATACTTGATCTGGTAGTGATACGTATTGAACAAATTTA
CTTAAATTTTCACTTAATTGTATTTTAAGCATTTTTAATTTTTAAATGTC
TGTTTGAATTTTACTTTACTAAATTGCTTCAATAAAATGGCAGTGTTGTG
GAAACGAATAATCTGCTTCATGACTCTTGATCATCCTTAAAATAAAATTC
CGAAGTGGATGTTATTCAAGTGGCGAATAAATCAACATTTTGCTACCGTT
TTATTTATTTCTCCTTATTCACACAGTACCCAGGGGTGTTTAACGGAGTT
GTTCCAAAACACTATGGTGATTAACTGTCATTTTGACACTTTTTCTGTTA
GACCCCTGTATGCACTTATTCCACCCTGGAGTAACTGTTTTCAGGACACA
AAATGGGGTACTACCCCTTAAAACGGATAATATTTCGGTCTGAAGCCAGT
TTTGTGATTGTGATTTTCCTTGGCCTTTTTGGCTGAGAAAAATCATTTTT
GTTAAAGCTTTTGAATCCAAAAAGNTCTTGGTCTTTTTGGCTGAGAAAAA
TCATTTTTTGTGGAAACTTTTGAATCCAAAAATATTGAAATGTACAAGAA
TTTACTCCACCAAAATTACTGCATACTGGTTTTAGCGTCTTTAGTACTTC
AGGTTATCCCGATTGGACCAACTGTTTCAGTCAGTATACCAGCACCGTAC
TAAGTGATACCATACTGTTCATATACTAGCTACGTGACCCCCTGCAGTGT
TATAGCACTCTTTACTTAGAGGGGGTGAGAGTGGTGATACCAACTTTTGA
AAACGGAATTAGAGGTTGTTCTAAGATCCTTGGTGTTAATTACCTTTTTA
CCATATCCACTTACAAAGCAACTGATTGTGACTGACTGACCGACAATACA
AGATAACTGACTGACAAATCAAAACAACTGACCGACGAAACAAACAGACT
TTTACCAACTATTTTGTAAGTTTGAAGTTTTTAACATGACAATTTAGTAT
ATATGTTTAAATACAGTAATGCAAGAATCAAAACCTTTTTTTAGCTATAA
ATTTGACATTTTCGCGACAAGATATTTTCGCGGAATTTATTTCTTAAATT
TAAAGGAAAGTTACTTACTTTAAATTTACTACTTTATTTACCTGATTATG
CTGATATGATGAATTTCGCGGAGTAAATTTTTGCGAGTGTCCAAATTTTA
TATTTTGCGGAATTTATCCTTGCGAATTTTCTATCTCAAAAAAATTAACG
GAACTAATTTTCCCGAAAAAGGGCTAATTCGCGAAAATAAATTCAGCAAA
AACTTCTTCAAATAAATAATTTTTTTCTCTGCATTCCATCATAGATGACA
GGGCTATCAATGGTGAATCGGAAATTGGAGAACCAGAAAACGAAGAACCA
TCTGCCAAAAAAACCAAGATCGTTAAGGTACCTTTATTTATAATTGAGCA
TATGCCAAGCAAACCTTGAGAAGGTGTTCTCATTTTTTCTCATTTGAAAC
AAATCAAAATGAAACATTATTTTTCTTTCCCAAAAAGAAACATAAGAATC
ATATGAGATAATACAACACCTAAACCTTGATAATGAAGATTTTCAAATAT
TGACAATTTGGCTTAAGAAAGATTGAATGTTTCTTTTATCAGAATAAGCA
TACTTTAAGCATTTTTAAGGCTCAAATTTTCAAAGCCTTAAGCATAATTC
GAGGATCAGCAAAAAATTGCTGATGCTTAAATTTAAAAAATCTGTAACAT
AATAATTAACGATTTTTCAGGTTATCATCCTAACTTTCTCGATGGTCAAT
TTTGATCTATTTTCCTAAGTACTTTATTTCACTCCTTCGTCTTTAATAAC
CGTTTGTCTATTTAGACTTGCCAACACTGTGAAGCACCAATAAGTATAAA
TGCTAGTCAGAAGTGTGCTAATTGTGGAAAAAAGCAAAACAAGGTTTGAA
ATATTTTAACATAAAAACCCTATTTATATTAATTTCATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAT
TAATTTTTGCGAGATAAATTTTGGTGGGATAAATTTTTGCGATATTTATT
TTAACGAATGAGAACTGAAAAGAATAGCATTTTCCTATACTTAGTTTTGG
GAATCATGGTATTGGTTTTCTGGTATAGATGATTTCGTTTTTTTACATTT
TACTTATGGCTCTGATTACAACTCTGAATCTAATTTCAATTCCCAAAGTC
ATTTTCTATTCTCTCGTCTTTTCACATTTGTTAATGACTTCAAAAGCTTA
TTAAAAGTGTGTATTCTAAGCCTTACAAATGCCTGCTATTTCTGGAAGGC
AATTCATCTTAACTGCTCAAATCATTTTTCGAGTTTTTAAAGACTATTTT
ACGTTTTGAATAAGTTTTCAATAACATTAAACGTAATAGCGAAATCATCT
ATTGCGAATGAAGACATGGACTTTAAAGAATCAATCATGGTATTAGGANT
CTTTTAAAGTGATTTTTCCATTAAAAAATTGTACATCGGATTTAGTATCT
CGAAAGTTTCTGCAGTGGGAACTAATCTTGTACATAGGGGGTATATACGT
ACTTTTTATTACATACTGCAGTTCGGTTTAAAATGCAGGCAGACTCTTTC
TATTTCTTGGAATTAGATAGTGTTGTTTAATTTTCAGGATCAATCGCTTC
TCTATCCGCGCAGTCCAACGTTGCACAGCCACGTTCGAATCCTACTGAGC
TGGAATTGCAAGATTCTTTTACGGGAGGTATAAAGTAANTTTAAAGACTA
TTTTACGTTTTGAATAAGTTTTCAATAACATTAAACGTAATAGCGAAATC
ATCTATTGCGAATGAAGACATGGACTTTAAAGAATCAATCATGGTATTAG
GAATCAATCTTCAATCTTCTTATTTTATTTATAGTGCTGCCAACATTGTA
TGAAACCCATGACTTCAAATGCAGCCAAACAATGCCATCTATGTGGTAAA
AGGCAGTTGACAAAGGCTGAAAGGATGGGAACCCTCGATGACGCTGGCCC
AAAAGGAACTATCGATCAAAGTGCTCAAAGATCCATAATTAGAACGAGAG
TCAGTTAAATCTTTATACGTATTTGTTNATTTGATAATATATCAATGTTT
CACATTTTGGAGTACATTAGGACAATAAATTGTAAGTTTTCTTTTCAGAT
TTCAAATCTGCTGATCATGCTAATAAAACCTTCTCTAANGCGTATTTGTT
TTAAGTTTAGCCAGGTGTCCTAAATCTGAGACGGTTGAATGGTTTGGAGC
TCCAGTAACATACCTTCCTTGTGATTTTAGATTAATGCACCATATTTTAT
CTGTGATAAATTTATTTAATAATTTCTTTTTTCCGGGCGTCAAGGATTCT
TTTTTATTATCCTTGGAATTTCAATCAAACCATACAACAATTTTTCTTTT
CTTTTTTCATCTTAGCTCAATCTCCTCCACAAAAAGGAAAATAATCATTG
TATCGTTCTTTACTTGAGTGGAGAACAACGGATACACGTGGACAGTTACG
CCACGCCAGGCTTTGCGAAGCATTTTATGGAGGGGNAAAATTATTTTCAT
TTGTTGACCCTTTTAATTTTAGATTCCTTTCTTGAACCAACTCAAAACCT
CTGTCCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTA
CCGGCCAACCATCAACCTCANAAAGCATTTTATGGAGGGGCTATCAATCG
GTGGCAATCTTTTTGGAGATGTCATCAAAGACACCTTTAAAACTGCA Coding sequence (CDS) from alignment at scaffold_8:137833..142029- >TCONS_00072560 ID=TCONS_00072560|Name=TCONS_00072560|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_8:137833..142029- (Clytia hemisphaerica)
CTCAATCTCCTCCACAAAAAGGAAAATAATCATTGTATCGTTCTTTACTT
GAGTGGAGAACAACGGATACACGTGGACAGTTACGCCACGCCAGGCTTTG
CGAAGCATTTTATGGAGGGGNAAAATTATTTTCATTTGTTGACCCTTTTA
ATTTTAGATTCCTTTCTTGAACCAACTCAAAACCTCTGTCCGTCTGTCCC
TGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTACCGGCCAACCATCAA
CCTCANAAAGCATTTTATGGAGGGGCTATCAATCGGTGGCAATCTTTTTG
GAGATGTCATCAAAGACACCTTTAAAACTGTGCTGCCAACATTGTATGAA
ACCCATGACTTCAAATGCAGCCAAACAATGCCATCTATGTGGTAAAAGGC
AGTTGACAAAGGCTGAAAGGATGGGAACCCTCGATGACGCTGGCCCAAAA
GGAACTATCGATCAAAGTGCTCAAAGATCCATAATTAGAACGAGAACTTG
CCAACACTGTGAAGCACCAATAAGTATAAATGCTAGTCAGAAGTGTGCTA
ATTGTGGAAAAAAGCAAAACAAGATGACAGGGCTATCAATGGTGAATCGG
AAATTGGAGAACCAGAAAACGAAGAACCATCTGCCAAAAAAACCAAGATC
GTTAAGGAACCAGTCACTTCTCGAACACTCAAAATCACAAGTCTGGGAAA
ACAACCAAACCAGCCCTTATCCAAACCATCAATGGAAGCTCAATCTCCTC
CACAAAAAGGAAAATAATCATTGTATCGTTCTTTACTTGAGTGGAGAACA
ACGGATACACGTGGACAGTTACGCCACGCCAGGCTTTGCGAAGCATTTTA
TGGAGGGGNAAAATTATTTTCATTTGTTGACCCTTTTAATTTTAGATTCC
TTTCTTGAACCAACTCAAAACCTCTGTCCGTCTGTCCCTGTCCAGTCAAT
TTCAACTAGGAGTTGCTCAACTACCGGCCAACCATCAACCTCANAAAGCA
TTTTATGGAGGGGCTATCAATCGGTGGCAATCTTTTTGGAGATGTCATCA
AAGACACCTTTAAAACTGTGCTGCCAACATTGTATGAAACCCATGACTTC
AAATGCAGCCAAACAATGCCATCTATGTGGTAAAAGGCAGTTGACAAAGG
CTGAAAGGATGGGAACCCTCGATGACGCTGGCCCAAAAGGAACTATCGAT
CAAAGTGCTCAAAGATCCATAATTAGAACGAGAACTTGCCAACACTGTGA
AGCACCAATAAGTATAAATGCTAGTCAGAAGTGTGCTAATTGTGGAAAAA
AGCAAAACAAGATGACAGGGCTATCAATGGTGAATCGGAAATTGGAGAAC
CAGAAAACGAAGAACCATCTGCCAAAAAAACCAAGATCGTTAAGGAACCA
GTCACTTCTCGAACACTCAAAATCACAAGTCTGGGAAAACAACCAAACCA
GCCCTTATCCAAACCATCAATGGAAGCTCAATCTCCTCCACAAAAAGGAA
AATAATCATTGTATCGTTCTTTACTTGAGTGGAGAACAACGGATACACGT
GGACAGTTACGCCACGCCAGGCTTTGCGAAGCATTTTATGGAGGGGNAAA
ATTATTTTCATTTGTTGACCCTTTTAATTTTAGATTCCTTTCTTGAACCA
ACTCAAAACCTCTGTCCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAG
TTGCTCAACTACCGGCCAACCATCAACCTCANAAAGCATTTTATGGAGGG
GCTATCAATCGGTGGCAATCTTTTTGGAGATGTCATCAAAGACACCTTTA
AAACTGTGCTGCCAACATTGTATGAAACCCATGACTTCAAATGCAGCCAA
ACAATGCCATCTATGTGGTAAAAGGCAGTTGACAAAGGCTGAAAGGATGG
GAACCCTCGATGACGCTGGCCCAAAAGGAACTATCGATCAAAGTGCTCAA
AGATCCATAATTAGAACGAGAACTTGCCAACACTGTGAAGCACCAATAAG
TATAAATGCTAGTCAGAAGTGTGCTAATTGTGGAAAAAAGCAAAACAAGA
TGACAGGGCTATCAATGGTGAATCGGAAATTGGAGAACCAGAAAACGAAG
AACCATCTGCCAAAAAAACCAAGATCGTTAAGGAACCAGTCACTTCTCGA
ACACTCAAAATCACAAGTCTGGGAAAACAACCAAACCAGCCCTTATCCAA
ACCATCAATGGAAGCTCAATCTCCTCCACAAAAAGGAAAATAATCATTGT
ATCGTTCTTTACTTGAGTGGAGAACAACGGATACACGTGGACAGTTACGC
CACGCCAGGCTTTGCGAAGCATTTTATGGAGGGGNAAAATTATTTTCATT
TGTTGACCCTTTTAATTTTAGATTCCTTTCTTGAACCAACTCAAAACCTC
TGTCCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTAC
CGGCCAACCATCAACCTCANAAAGCATTTTATGGAGGGGCTATCAATCGG
TGGCAATCTTTTTGGAGATGTCATCAAAGACACCTTTAAAACTGTGCTGC
CAACATTGTATGAAACCCATGACTTCAAATGCAGCCAAACAATGCCATCT
ATGTGGTAAAAGGCAGTTGACAAAGGCTGAAAGGATGGGAACCCTCGATG
ACGCTGGCCCAAAAGGAACTATCGATCAAAGTGCTCAAAGATCCATAATT
AGAACGAGAACTTGCCAACACTGTGAAGCACCAATAAGTATAAATGCTAG
TCAGAAGTGTGCTAATTGTGGAAAAAAGCAAAACAAGATGACAGGGCTAT
CAATGGTGAATCGGAAATTGGAGAACCAGAAAACGAAGAACCATCTGCCA
AAAAAACCAAGATCGTTAAGGAACCAGTCACTTCTCGAACACTCAAAATC
ACAAGTCTGGGAAAACAACCAAACCAGCCCTTATCCAAACCATCAATGGA
AGCTCAATCTCCTCCACAAAAAGGAAAATAATCATTGTATCGTTCTTTAC
TTGAGTGGAGAACAACGGATACACGTGGACAGTTACGCCACGCCAGGCTT
TGCGAAGCATTTTATGGAGGGGNAAAATTATTTTCATTTGTTGACCCTTT
TAATTTTAGATTCCTTTCTTGAACCAACTCAAAACCTCTGTCCGTCTGTC
CCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTACCGGCCAACCATC
AACCTCANAAAGCATTTTATGGAGGGGCTATCAATCGGTGGCAATCTTTT
TGGAGATGTCATCAAAGACACCTTTAAAACTGTGCTGCCAACATTGTATG
AAACCCATGACTTCAAATGCAGCCAAACAATGCCATCTATGTGGTAAAAG
GCAGTTGACAAAGGCTGAAAGGATGGGAACCCTCGATGACGCTGGCCCAA
AAGGAACTATCGATCAAAGTGCTCAAAGATCCATAATTAGAACGAGAACT
TGCCAACACTGTGAAGCACCAATAAGTATAAATGCTAGTCAGAAGTGTGC
TAATTGTGGAAAAAAGCAAAACAAGATGACAGGGCTATCAATGGTGAATC
GGAAATTGGAGAACCAGAAAACGAAGAACCATCTGCCAAAAAAACCAAGA
TCGTTAAGGAACCAGTCACTTCTCGAACACTCAAAATCACAAGTCTGGGA
AAACAACCAAACCAGCCCTTATCCAAACCATCAATGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072560-exon-scaffold_8-1575043694:141948..142029 | TCONS_00072560-exon-scaffold_8-1575043694:141948..142029 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1575043694:140253..140335 | TCONS_00072560-exon-scaffold_8-1575043694:140253..140335 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1575043694:139737..139814 | TCONS_00072560-exon-scaffold_8-1575043694:139737..139814 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1575043694:138531..138695 | TCONS_00072560-exon-scaffold_8-1575043694:138531..138695 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1575043694:137833..138164 | TCONS_00072560-exon-scaffold_8-1575043694:137833..138164 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1510915933:141948..142029 | TCONS_00072560-exon-scaffold_8-1510915933:141948..142029 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1510915933:140253..140335 | TCONS_00072560-exon-scaffold_8-1510915933:140253..140335 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1510915933:139737..139814 | TCONS_00072560-exon-scaffold_8-1510915933:139737..139814 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1510915933:138531..138695 | TCONS_00072560-exon-scaffold_8-1510915933:138531..138695 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1510915933:137833..138164 | TCONS_00072560-exon-scaffold_8-1510915933:137833..138164 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1491911889:141948..142029 | TCONS_00072560-exon-scaffold_8-1491911889:141948..142029 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1491911889:140253..140335 | TCONS_00072560-exon-scaffold_8-1491911889:140253..140335 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1491911889:139737..139814 | TCONS_00072560-exon-scaffold_8-1491911889:139737..139814 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1491911889:138531..138695 | TCONS_00072560-exon-scaffold_8-1491911889:138531..138695 | Clytia hemisphaerica | exon |
| TCONS_00072560-exon-scaffold_8-1491911889:137833..138164 | TCONS_00072560-exon-scaffold_8-1491911889:137833..138164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:137833..142029 - |
Blast
The following BLAST results are available for this feature:
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