XLOC_043530 (gene) - C. hemisphaerica

Overview
NameXLOC_043530
Unique NameXLOC_043530
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_511:322502..326468+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043530 ID=XLOC_043530|Name=XLOC_043530|organism=Clytia hemisphaerica|type=gene|length=3967bp|location=Sequence derived from alignment at scaffold_511:322502..326468+ (Clytia hemisphaerica)
tTTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTG
TGGAAACGAGGTACCATTTGatctttaacatattttattTGTGGTTTTGA
CCTACCTgagcaaaaactttcaaaaccgtAATATTACTGTTTGCCCCATA
CTGAGATGTTTGTGccatctgaaaaaaaatcaagatatgAGATTGGACCC
TGTTTTCGTCATACCATATTGTCATGTCAATTTTAATACAATTTAGCTAC
CttagatatgtttttttttgtcagacGTGTACAATTTGTTTGGAAGAGTT
TGAACCATCAGAAGAAATCAAGTTAACTCCTTGCAATCATGGATATCATC
CTGAGTAAAAtcctttcttttgtttgatAGATCCTATCCATTTGTGaata
ttattcttttttttgagaatcagAGGATGACTTTGTTTACTGTCTTTAAT
TTTTTAGATGGGATAGTTTTGCAATATTGCGCAGTATTACAACCTGTTAT
CAGCTCATTTAAAAATATCTGAAATTATAGCCTATTTTACCCATTAtaat
aaatcaatataaaaattatAAGCTAAAATATAagcttttcaaatttaaaa
atgttcaaCTTTAAAATGGCTTCCATGAGTGTGTAAAAACCagcttaaaa
caaaaaattatggtcctctttcaaatgaaacaaaaaatttcgattttgaa
gattttttgattgtcgatgacgtcatcgatgacgtcattttataagctat
tttcctttatagcttctaaaatattgattttcaggtatatgttgtgatac
tttttggaatcctcggataaatatctttcatttgagccatattTGAGCTT
TCATTTTCAATCCCCAGCAATAGTGATGACGTCACACGGGGACcagtaaa
attctcaaaatttttctcaccactcgtttttgtgatcttatattatctaa
ttgatcatttagaaaacttagtttgcttttaacaactctgtgcacacgaa
ggatgttttcagaacatagtggctctcactagcactacttttatttttgt
gttttccaTTTTTAGCTGTCTAGAGCATTGGATGCGAGAGAGAAGCAACT
GTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTCTGATGAAAATACA
CCCTTATTGAGAAGCTACACAATCGATGTTTAATGTGaggattattttat
tttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTGTTGTGTTTTACCT
ACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTCTATTTTTGAATCC
TCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCATGATTTGTGATTT
GTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTAG
CTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTTT
GTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGT
GCCGAATGAAATTTCATCTANTGTGTTTTTCCCGGCTGTGTTGTGTTTTA
CCTCTGTGTTTAAAAAATGCAATTATAGCAAAGAGCTTCTATTTTTGAAT
CCTCAAATTCTCTTCTTCATCCATAAGATGTAATCCTCATGATTTGTGTA
TATACAAAGTAGTgtttatgaaattgttttttctttgtgtttaaggTGAA
GAATGGTTACTCATTTGGTCATAATTGCCATTTTAGCTGTTGTTGTTGCT
TTTTTCCTTTCACACGACAAAATTACATTCATTTTTGTTGAGAAAGATGC
TGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGTGCCGAATGAAATTT
CATCTANGCAACTGTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTC
TGATGAAAATACACCCTTATTGAGAAGCTACACAATCGATGTTTAATGTG
aggattattttattttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTG
TTGTGTTTTACCTACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTC
TATTTTTGAATCCTCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCA
TGATTTGTGATTTGTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATA
ATTGCCATTTTAGCTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAAT
TACATTCATTTTTGTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGA
TTCTTTCAGGAGTGCCGAATGAAATTTCATCTACTGTATTTTGTACCCTT
AGTAAACTTGGTAACCAAGAATGCAGATTCCAGAACCTTTGTTTTTATAA
CAATCAATACACTTACTATTATGGCAAAAACTCTAAAGAAGAAGGATTAC
AATCAGAATCACCTTTTCTACTTGATTTATCAAGTGTAAGAAACCATAAT
GCAAAATACTTTCAATTTTCTAATAGAACTATGACAAAAAACACGAAATT
TCATTATATTCGTGGCAACACAATTTTGTTTCATCGATTCAATCCTGATA
ACCTGATGCATGTTATCCATGACGATTTACTTCCTTACTTTCACACTAGG
CGGAAATATTTTGACGGTAAAGAAGTGACTACTATCTTCATGGAGGGGCG
TGAAGATGGGCCTTTTTATGATTTATACACCTTATTCATGGAACGGATAT
TAACAGAGAGAAATCTCACTTCGATGACCTGCTTTGAGAATGTCATTATT
GGTGTAAGTCAAGAGGTCACATGGTACCAATATGGTTTCCATACCCCTCA
AGGACCAATCAATGTTGAGAATTATCCAACAAATGAATTACTTTCTTTCA
AAGATGAATTTATGAAGCGATTGAAGATGAATATGGATCAATCATTCACT
CTATCGAAGGTAGTTATCTTCAAACGCCAAGACACTAGACGAATTACAAA
TATGAACGAGTTAGTATTGAAACTATCAATGAGGTTCAAAGCTGAGGTTA
CCATATTGGATTTACAAGAGGACACTTTTGAAGACATCCTAACAGCAGTA
TCTAATGCCAAGCTTTTGATTGGTGTTCATGGTGCCCATTTAGTTACCAG
TCTCTTTCTCCCTCCTGGTGCCTTATTAATGGAAATTTATCCTTATGGGA
TACCTTCGGAGAACTATACACCATACAAAACTCTTGTATCGCTCATTGGG
GTCCAGTATTTAGCCTTTGAAACAGAATCAGAAGACTTGTCAACGAATTT
TATCGACCGCCCACCAAATCAAGGCGGTATCGCACACCTACCACCACACC
AAAAAGAGGAAATTTTGAACACAAAGAGAGTTCCCGAACATCTTTGTTGT
GACAACCCTTTCTGGTTGTTTAGGATTTACCAAGACACCGAGGTTGATAT
CAATAGGTTTTTACCACTTTTACATGGTAGAATTTCCTAATTCTTTTAAT
TGTATTGGATAAGATTTTTATCTGTGCTCCAGAAAACTATCAGATACTAG
ATTAGGTGAAACTTGAAAGGGCTAATCTTTGATAAAGCCTTGACAGCAAA
CATCTGTTGGATTAAAATTgaggttttctttaaaaaatgttacTTGTTAA
AAGGTTTCATAGACGAAACATAAAAAATCTGATTACCctccttaaatttt
atcgatatTACCTATAATTGCCTCCCTCGATTGTAATTCTATCTTCGATC
TTCATTTGAATCATGGAGAgagttttatattattttccaGTTTAAGTGGG
GGGGGGCAGCATGTTTCAGTTCGAATTACAGGaaagattcaaaattttag
aagatATCTGCAGAAATACGTAAATTTCTAGTACAGTAAGCCAAATGGGA
AGATTCTATTTGGctttttaacaaaatattttgtaactttttttagtTTA
TATACAATGTACGcattcaaatcatttttttagaagaaatttagcaattt
ttattttttgagaaatt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069895TCONS_00069895Clytia hemisphaericatranscript
TCONS_00069896TCONS_00069896Clytia hemisphaericatranscript
TCONS_00069897TCONS_00069897Clytia hemisphaericatranscript
TCONS_00069898TCONS_00069898Clytia hemisphaericatranscript
TCONS_00069899TCONS_00069899Clytia hemisphaericatranscript
TCONS_00069900TCONS_00069900Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069897-proteinTCONS_00069897-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:322502..326468 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.85	51.27	52.66	54.82	36.64	20.83	27.12	30.68	20.25	23.07	21.47	12.21	14.18	12.17	13.71	16.55	10.11	10.39	5.82	10.57	8.09	5.74	29	29.02	8.16	11.25	9.73	4.53	13.73	15.02