TCONS_00069897 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069897
Unique Name	TCONS_00069897
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2192

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_511:322502..326468+
coding sequence from alignment at scaffold_511:322502..326468+

transcript sequence

>TCONS_00069897 ID=TCONS_00069897|Name=TCONS_00069897|organism=Clytia hemisphaerica|type=transcript|length=2192bp
tTTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTG
TGGAAACGAGacGTGTACAATTTGTTTGGAAGAGTTTGAACCATCAGAAG
AAATCAAGTTAACTCCTTGCAATCATGGATATCATCCTGACTGTCTAGAG
CATTGGATGCGAGAGAGAAGCAACTGTCCCATGTGTCAAGCTCCTTTGAA
GAAAGACACTTCTGATGAAAATACACCCTTATTGAGAAGCTACACAATCG
ATGTTTAATgTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTAG
CTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTTT
GTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGT
GCCGAATGAAATTTCATCTANGCAACTGTCCCATGTGTCAAGCTCCTTTG
AAGAAAGACACTTCTGATGAAAATACACCCTTATTGAGAAGCTACACAAT
CGATGTTTAATGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTT
AGCTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTT
TTGTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGA
GTGCCGAATGAAATTTCATCTACTGTATTTTGTACCCTTAGTAAACTTGG
TAACCAAGAATGCAGATTCCAGAACCTTTGTTTTTATAACAATCAATACA
CTTACTATTATGGCAAAAACTCTAAAGAAGAAGGATTACAATCAGAATCA
CCTTTTCTACTTGATTTATCAAGTGCGGAAATATTTTGACGGTAAAGAAG
TGACTACTATCTTCATGGAGGGGCGTGAAGATGGGCCTTTTTATGATTTA
TACACCTTATTCATGGAACGGATATTAACAGAGAGAAATCTCACTTCGAT
GACCTGCTTTGAGAATGTCATTATTGGTGTAAGTCAAGAGGTCACATGGT
ACCAATATGGTTTCCATACCCCTCAAGGACCAATCAATGTTGAGAATTAT
CCAACAAATGAATTACTTTCTTTCAAAGATGAATTTATGAAGCGATTGAA
GATGAATATGGATCAATCATTCACTCTATCGAAGGTAGTTATCTTCAAAC
GCCAAGACACTAGACGAATTACAAATATGAACGAGTTAGTATTGAAACTA
TCAATGAGGTTCAAAGCTGAGGTTACCATATTGGATTTACAAGAGGACAC
TTTTGAAGACATCCTAACAGCAGTATCTAATGCCAAGCTTTTGATTGGTG
TTCATGGTGCCCATTTAGTTACCAGTCTCTTTCTCCCTCCTGGTGCCTTA
TTAATGGAAATTTATCCTTATGGGATACCTTCGGAGAACTATACACCATA
CAAAACTCTTGTATCGCTCATTGGGGTCCAGTATTTAGCCTTTGAAACAG
AATCAGAAGACTTGTCAACGAATTTTATCGACCGCCCACCAAATCAAGGC
GGTATCGCACACCTACCACCACACCAAAAAGAGGAAATTTTGAACACAAA
GAGAGTTCCCGAACATCTTTGTTGTGACAACCCTTTCTGGTTGTTTAGGA
TTTACCAAGACACCGAGGTTGATATCAATAGGTTTTTACCACTTTTACAT
GGTAGAATTTCCTAATTCTTTTAATTGTATTGGATAAGATTTTTATCTGT
GCTCCAGAAAACTATCAGATACTAGATTAGGTGAAACTTGAAAGGGCTAA
TCTTTGATAAAGCCTTGACAGCAAACATCTGTTGGATTAAAATTgaggtt
ttctttaaaaaatgttacTTGTTAAAAGGTTTCATAGACGAAACATAAAA
AATCTGATTACCctccttaaattttatcgatatTACCTATAATTGCCTCC
CTCGATTGTAATTCTATCTTCGATCTTCATTTGAATCATGGAGAgagttt
tatattattttccaGTTTAAGTGGGGGGGGGCAGCATGTTTCAGTTCGAA
TTACAGGaaagattcaaaattttagaagatATCTGCAGAAATACGTAAAT
TTCTAGTACAGTAAGCCAAATGGGAAGATTCTATTTGGctttttaacaaa
atattttgtaactttttttagtTTATATACAATGTACGcattcaaatcat
ttttttagaagaaatttagcaatttttattttttgagaaatt

Run BLAST on NCBI

protein sequence of TCONS_00069897-protein

>TCONS_00069897-protein ID=TCONS_00069897-protein|Name=TCONS_00069897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MKFHLLYFVPLVNLVTKNADSRTFVFITINTLTIMAKTLKKKDYNQNHLF
YLIYQVRKYFDGKEVTTIFMEGREDGPFYDLYTLFMERILTERNLTSMTC
FENVIIGVSQEVTWYQYGFHTPQGPINVENYPTNELLSFKDEFMKRLKMN
MDQSFTLSKVVIFKRQDTRRITNMNELVLKLSMRFKAEVTILDLQEDTFE
DILTAVSNAKLLIGVHGAHLVTSLFLPPGALLMEIYPYGIPSENYTPYKT
LVSLIGVQYLAFETESEDLSTNFIDRPPNQGGIAHLPPHQKEEILNTKRV
PEHLCCDNPFWLFRIYQDTEVDINRFLPLLHGRIS

Run BLAST on NCBI

transcript from alignment at scaffold_511:322502..326468+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069897 ID=TCONS_00069897|Name=TCONS_00069897|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at scaffold_511:322502..326468+ (Clytia hemisphaerica)
tTTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTG
TGGAAACGAGGTACCATTTGatctttaacatattttattTGTGGTTTTGA
CCTACCTgagcaaaaactttcaaaaccgtAATATTACTGTTTGCCCCATA
CTGAGATGTTTGTGccatctgaaaaaaaatcaagatatgAGATTGGACCC
TGTTTTCGTCATACCATATTGTCATGTCAATTTTAATACAATTTAGCTAC
CttagatatgtttttttttgtcagacGTGTACAATTTGTTTGGAAGAGTT
TGAACCATCAGAAGAAATCAAGTTAACTCCTTGCAATCATGGATATCATC
CTGAGTAAAAtcctttcttttgtttgatAGATCCTATCCATTTGTGaata
ttattcttttttttgagaatcagAGGATGACTTTGTTTACTGTCTTTAAT
TTTTTAGATGGGATAGTTTTGCAATATTGCGCAGTATTACAACCTGTTAT
CAGCTCATTTAAAAATATCTGAAATTATAGCCTATTTTACCCATTAtaat
aaatcaatataaaaattatAAGCTAAAATATAagcttttcaaatttaaaa
atgttcaaCTTTAAAATGGCTTCCATGAGTGTGTAAAAACCagcttaaaa
caaaaaattatggtcctctttcaaatgaaacaaaaaatttcgattttgaa
gattttttgattgtcgatgacgtcatcgatgacgtcattttataagctat
tttcctttatagcttctaaaatattgattttcaggtatatgttgtgatac
tttttggaatcctcggataaatatctttcatttgagccatattTGAGCTT
TCATTTTCAATCCCCAGCAATAGTGATGACGTCACACGGGGACcagtaaa
attctcaaaatttttctcaccactcgtttttgtgatcttatattatctaa
ttgatcatttagaaaacttagtttgcttttaacaactctgtgcacacgaa
ggatgttttcagaacatagtggctctcactagcactacttttatttttgt
gttttccaTTTTTAGCTGTCTAGAGCATTGGATGCGAGAGAGAAGCAACT
GTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTCTGATGAAAATACA
CCCTTATTGAGAAGCTACACAATCGATGTTTAATGTGaggattattttat
tttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTGTTGTGTTTTACCT
ACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTCTATTTTTGAATCC
TCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCATGATTTGTGATTT
GTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTAG
CTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTTT
GTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGT
GCCGAATGAAATTTCATCTANTGTGTTTTTCCCGGCTGTGTTGTGTTTTA
CCTCTGTGTTTAAAAAATGCAATTATAGCAAAGAGCTTCTATTTTTGAAT
CCTCAAATTCTCTTCTTCATCCATAAGATGTAATCCTCATGATTTGTGTA
TATACAAAGTAGTgtttatgaaattgttttttctttgtgtttaaggTGAA
GAATGGTTACTCATTTGGTCATAATTGCCATTTTAGCTGTTGTTGTTGCT
TTTTTCCTTTCACACGACAAAATTACATTCATTTTTGTTGAGAAAGATGC
TGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGTGCCGAATGAAATTT
CATCTANGCAACTGTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTC
TGATGAAAATACACCCTTATTGAGAAGCTACACAATCGATGTTTAATGTG
aggattattttattttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTG
TTGTGTTTTACCTACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTC
TATTTTTGAATCCTCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCA
TGATTTGTGATTTGTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATA
ATTGCCATTTTAGCTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAAT
TACATTCATTTTTGTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGA
TTCTTTCAGGAGTGCCGAATGAAATTTCATCTACTGTATTTTGTACCCTT
AGTAAACTTGGTAACCAAGAATGCAGATTCCAGAACCTTTGTTTTTATAA
CAATCAATACACTTACTATTATGGCAAAAACTCTAAAGAAGAAGGATTAC
AATCAGAATCACCTTTTCTACTTGATTTATCAAGTGTAAGAAACCATAAT
GCAAAATACTTTCAATTTTCTAATAGAACTATGACAAAAAACACGAAATT
TCATTATATTCGTGGCAACACAATTTTGTTTCATCGATTCAATCCTGATA
ACCTGATGCATGTTATCCATGACGATTTACTTCCTTACTTTCACACTAGG
CGGAAATATTTTGACGGTAAAGAAGTGACTACTATCTTCATGGAGGGGCG
TGAAGATGGGCCTTTTTATGATTTATACACCTTATTCATGGAACGGATAT
TAACAGAGAGAAATCTCACTTCGATGACCTGCTTTGAGAATGTCATTATT
GGTGTAAGTCAAGAGGTCACATGGTACCAATATGGTTTCCATACCCCTCA
AGGACCAATCAATGTTGAGAATTATCCAACAAATGAATTACTTTCTTTCA
AAGATGAATTTATGAAGCGATTGAAGATGAATATGGATCAATCATTCACT
CTATCGAAGGTAGTTATCTTCAAACGCCAAGACACTAGACGAATTACAAA
TATGAACGAGTTAGTATTGAAACTATCAATGAGGTTCAAAGCTGAGGTTA
CCATATTGGATTTACAAGAGGACACTTTTGAAGACATCCTAACAGCAGTA
TCTAATGCCAAGCTTTTGATTGGTGTTCATGGTGCCCATTTAGTTACCAG
TCTCTTTCTCCCTCCTGGTGCCTTATTAATGGAAATTTATCCTTATGGGA
TACCTTCGGAGAACTATACACCATACAAAACTCTTGTATCGCTCATTGGG
GTCCAGTATTTAGCCTTTGAAACAGAATCAGAAGACTTGTCAACGAATTT
TATCGACCGCCCACCAAATCAAGGCGGTATCGCACACCTACCACCACACC
AAAAAGAGGAAATTTTGAACACAAAGAGAGTTCCCGAACATCTTTGTTGT
GACAACCCTTTCTGGTTGTTTAGGATTTACCAAGACACCGAGGTTGATAT
CAATAGGTTTTTACCACTTTTACATGGTAGAATTTCCTAATTCTTTTAAT
TGTATTGGATAAGATTTTTATCTGTGCTCCAGAAAACTATCAGATACTAG
ATTAGGTGAAACTTGAAAGGGCTAATCTTTGATAAAGCCTTGACAGCAAA
CATCTGTTGGATTAAAATTgaggttttctttaaaaaatgttacTTGTTAA
AAGGTTTCATAGACGAAACATAAAAAATCTGATTACCctccttaaatttt
atcgatatTACCTATAATTGCCTCCCTCGATTGTAATTCTATCTTCGATC
TTCATTTGAATCATGGAGAgagttttatattattttccaGTTTAAGTGGG
GGGGGGCAGCATGTTTCAGTTCGAATTACAGGaaagattcaaaattttag
aagatATCTGCAGAAATACGTAAATTTCTAGTACAGTAAGCCAAATGGGA
AGATTCTATTTGGctttttaacaaaatattttgtaactttttttagtTTA
TATACAATGTACGcattcaaatcatttttttagaagaaatttagcaattt
ttattttttgagaaatt

Coding sequence (CDS) from alignment at scaffold_511:322502..326468+

>TCONS_00069897 ID=TCONS_00069897|Name=TCONS_00069897|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_511:322502..326468+ (Clytia hemisphaerica)
ATGAAATTTCATCTACTGTATTTTGTACCCTTAGTAAACTTGGTAACCAA
GAATGCAGATTCCAGAACCTTTGTTTTTATAACAATCAATACACTTACTA
TTATGGCAAAAACTCTAAAGAAGAAGGATTACAATCAGAATCACCTTTTC
TACTTGATTTATCAAGTGCGGAAATATTTTGACGGTAAAGAAGTGACTAC
TATCTTCATGGAGGGGCGTGAAGATGGGCCTTTTTATGATTTATACACCT
TATTCATGGAACGGATATTAACAGAGAGAAATCTCACTTCGATGACCTGC
TTTGAGAATGTCATTATTGGTGTAAGTCAAGAGGTCACATGGTACCAATA
TGGTTTCCATACCCCTCAAGGACCAATCAATGTTGAGAATTATCCAACAA
ATGAATTACTTTCTTTCAAAGATGAATTTATGAAGCGATTGAAGATGAAT
ATGGATCAATCATTCACTCTATCGAAGGTAGTTATCTTCAAACGCCAAGA
CACTAGACGAATTACAAATATGAACGAGTTAGTATTGAAACTATCAATGA
GGTTCAAAGCTGAGGTTACCATATTGGATTTACAAGAGGACACTTTTGAA
GACATCCTAACAGCAGTATCTAATGCCAAGCTTTTGATTGGTGTTCATGG
TGCCCATTTAGTTACCAGTCTCTTTCTCCCTCCTGGTGCCTTATTAATGG
AAATTTATCCTTATGGGATACCTTCGGAGAACTATACACCATACAAAACT
CTTGTATCGCTCATTGGGGTCCAGTATTTAGCCTTTGAAACAGAATCAGA
AGACTTGTCAACGAATTTTATCGACCGCCCACCAAATCAAGGCGGTATCG
CACACCTACCACCACACCAAAAAGAGGAAATTTTGAACACAAAGAGAGTT
CCCGAACATCTTTGTTGTGACAACCCTTTCTGGTTGTTTAGGATTTACCA
AGACACCGAGGTTGATATCAATAGGTTTTTACCACTTTTACATGGTAGAA
TTTCCTAAATGAAATTTCATCTACTGTATTTTGTACCCTTAGTAAACTTG
GTAACCAAGAATGCAGATTCCAGAACCTTTGTTTTTATAACAATCAATAC
ACTTACTATTATGGCAAAAACTCTAAAGAAGAAGGATTACAATCAGAATC
ACCTTTTCTACTTGATTTATCAAGTGCGGAAATATTTTGACGGTAAAGAA
GTGACTACTATCTTCATGGAGGGGCGTGAAGATGGGCCTTTTTATGATTT
ATACACCTTATTCATGGAACGGATATTAACAGAGAGAAATCTCACTTCGA
TGACCTGCTTTGAGAATGTCATTATTGGTGTAAGTCAAGAGGTCACATGG
TACCAATATGGTTTCCATACCCCTCAAGGACCAATCAATGTTGAGAATTA
TCCAACAAATGAATTACTTTCTTTCAAAGATGAATTTATGAAGCGATTGA
AGATGAATATGGATCAATCATTCACTCTATCGAAGGTAGTTATCTTCAAA
CGCCAAGACACTAGACGAATTACAAATATGAACGAGTTAGTATTGAAACT
ATCAATGAGGTTCAAAGCTGAGGTTACCATATTGGATTTACAAGAGGACA
CTTTTGAAGACATCCTAACAGCAGTATCTAATGCCAAGCTTTTGATTGGT
GTTCATGGTGCCCATTTAGTTACCAGTCTCTTTCTCCCTCCTGGTGCCTT
ATTAATGGAAATTTATCCTTATGGGATACCTTCGGAGAACTATACACCAT
ACAAAACTCTTGTATCGCTCATTGGGGTCCAGTATTTAGCCTTTGAAACA
GAATCAGAAGACTTGTCAACGAATTTTATCGACCGCCCACCAAATCAAGG
CGGTATCGCACACCTACCACCACACCAAAAAGAGGAAATTTTGAACACAA
AGAGAGTTCCCGAACATCTTTGTTGTGACAACCCTTTCTGGTTGTTTAGG
ATTTACCAAGACACCGAGGTTGATATCAATAGGTTTTTACCACTTTTACA
TGGTAGAATTTCCTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043530	XLOC_043530	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069897-protein	TCONS_00069897-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_511	supercontig	scaffold_511:322502..326468 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.45008	0.543003	0.338902	0	0.146951	0	0.187524	0.187263	0.486186	0	0	0.105687	0	0	0	0	0	0	0	0.151154	0	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007657	Glycosyltransferase_61

Vocabulary: **Molecular Function**
Term	Definition
GO:0016757	transferase activity, transferring glycosyl groups

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Blast

[Close]

BLAST of TCONS_00069897 vs. Swiss-Prot (Human)
Match: PMGT2 (Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Homo sapiens GN=POMGNT2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.435e-54
Identity = 116/294 (39.46%), Postives = 168/294 (57.14%), Query Frame = 1

Query:  790 NQNHLFY-----LIYQVRKYFD-GKEVTTIFMEGREDGPFYDLYTLFMERILTER----NLTSMTCFENVIIGVSQEVTWYQYGFHTPQGPINVENYPTNELLSFKDEFMKRLKMNMDQS---FTLSKVVIFKRQDTRRITNMNELVLKLSMRFKAEVTILDLQEDTFEDILTAVSNAKLLIGVHGAHLVTSLFLPPGALLMEIYPYGIPSENYTPYKTLVSLIG--VQYLAFETESEDLSTNFIDRPPNQGGIAHLPPHQKEEILNTKRVPEHLCCDNPFWLFRIYQDTEVDI 1626
            N  H+F+     L Y +R++     E    FMEG  +G  +DLY L   +    R     L  + CF +  +G+S+  TWYQYGF  PQGP        NE+  F   FM   K+N+  +        +++F R   R I N  EL+L L+  F+ +   + L++ TF D++  VSNA +L+ +HGA LVT+LFLP GA ++E++PY +  ++YTPYKTL  L G  +QY+A+     + +    +RP +QGGI HL   ++  IL ++ VP HLCC NP WLFRIYQDT+VDI
Sbjct:  163 NLMHVFHDDLLPLFYTLRQFPGLAHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKITTWYQYGFVQPQGPKANILVSGNEIRQFA-RFMTE-KLNVSHTGVPLGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGATVVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRAEQARILQSREVPRHLCCRNPEWLFRIYQDTKVDI 454

The following BLAST results are available for this feature:

BLAST of TCONS_00069897 vs. Swiss-Prot (Human)

BLAST of TCONS_00069897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PMGT2	6.435e-54	39.46	Protein O-linked-mannose beta-1,4-N-acetylglucosam...	[more]

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TCONS_00069897 (transcript) - C. hemisphaerica