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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069896 ID=TCONS_00069896|Name=TCONS_00069896|organism=Clytia hemisphaerica|type=transcript|length=1627bp
tTTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTG
TGGAAACGAGacGTGTACAATTTGTTTGGAAGAGTTTGAACCATCAGAAG
AAATCAAGTTAACTCCTTGCAATCATGGATATCATCCTGACTGTCTAGAG
CATTGGATGCGAGAGAGAAGCAACTGTCCCATGTGTCAAGCTCCTTTGAA
GAAAGACACTTCTGATGAAAATACACCCTTATTGAGAAGCTACACAATCG
ATGTTTAATGCGGAAATATTTTGACGGTAAAGAAGTGACTACTATCTTCA
TGGAGGGGCGTGAAGATGGGCCTTTTTATGATTTATACACCTTATTCATG
GAACGGATATTAACAGAGAGAAATCTCACTTCGATGACCTGCTTTGAGAA
TGTCATTATTGGTGTAAGTCAAGAGGTCACATGGTACCAATATGGTTTCC
ATACCCCTCAAGGACCAATCAATGTTGAGAATTATCCAACAAATGAATTA
CTTTCTTTCAAAGATGAATTTATGAAGCGATTGAAGATGAATATGGATCA
ATCATTCACTCTATCGAAGGTAGTTATCTTCAAACGCCAAGACACTAGAC
GAATTACAAATATGAACGAGTTAGTATTGAAACTATCAATGAGGTTCAAA
GCTGAGGTTACCATATTGGATTTACAAGAGGACACTTTTGAAGACATCCT
AACAGCAGTATCTAATGCCAAGCTTTTGATTGGTGTTCATGGTGCCCATT
TAGTTACCAGTCTCTTTCTCCCTCCTGGTGCCTTATTAATGGAAATTTAT
CCTTATGGGATACCTTCGGAGAACTATACACCATACAAAACTCTTGTATC
GCTCATTGGGGTCCAGTATTTAGCCTTTGAAACAGAATCAGAAGACTTGT
CAACGAATTTTATCGACCGCCCACCAAATCAAGGCGGTATCGCACACCTA
CCACCACACCAAAAAGAGGAAATTTTGAACACAAAGAGAGTTCCCGAACA
TCTTTGTTGTGACAACCCTTTCTGGTTGTTTAGGATTTACCAAGACACCG
AGGTTGATATCAATAGGTTTTTACCACTTTTACATGGTAGAATTTCCTAA
TTCTTTTAATTGTATTGGATAAGATTTTTATCTGTGCTCCAGAAAACTAT
CAGATACTAGATTAGGTGAAACTTGAAAGGGCTAATCTTTGATAAAGCCT
TGACAGCAAACATCTGTTGGATTAAAATTgaggttttctttaaaaaatgt
tacTTGTTAAAAGGTTTCATAGACGAAACATAAAAAATCTGATTACCctc
cttaaattttatcgatatTACCTATAATTGCCTCCCTCGATTGTAATTCT
ATCTTCGATCTTCATTTGAATCATGGAGAgagttttatattattttccaG
TTTAAGTGGGGGGGGGCAGCATGTTTCAGTTCGAATTACAGGaaagattc
aaaattttagaagatATCTGCAGAAATACGTAAATTTCTAGTACAGTAAG
CCAAATGGGAAGATTCTATTTGGctttttaacaaaatattttgtaacttt
ttttagtTTATATACAATGTACGcattcaaatcatttttttagaagaaat
ttagcaatttttattttttgagaaatt Run BLAST on NCBI transcript from alignment at scaffold_511:322502..326468+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069896 ID=TCONS_00069896|Name=TCONS_00069896|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at scaffold_511:322502..326468+ (Clytia hemisphaerica)
tTTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTG
TGGAAACGAGGTACCATTTGatctttaacatattttattTGTGGTTTTGA
CCTACCTgagcaaaaactttcaaaaccgtAATATTACTGTTTGCCCCATA
CTGAGATGTTTGTGccatctgaaaaaaaatcaagatatgAGATTGGACCC
TGTTTTCGTCATACCATATTGTCATGTCAATTTTAATACAATTTAGCTAC
CttagatatgtttttttttgtcagacGTGTACAATTTGTTTGGAAGAGTT
TGAACCATCAGAAGAAATCAAGTTAACTCCTTGCAATCATGGATATCATC
CTGAGTAAAAtcctttcttttgtttgatAGATCCTATCCATTTGTGaata
ttattcttttttttgagaatcagAGGATGACTTTGTTTACTGTCTTTAAT
TTTTTAGATGGGATAGTTTTGCAATATTGCGCAGTATTACAACCTGTTAT
CAGCTCATTTAAAAATATCTGAAATTATAGCCTATTTTACCCATTAtaat
aaatcaatataaaaattatAAGCTAAAATATAagcttttcaaatttaaaa
atgttcaaCTTTAAAATGGCTTCCATGAGTGTGTAAAAACCagcttaaaa
caaaaaattatggtcctctttcaaatgaaacaaaaaatttcgattttgaa
gattttttgattgtcgatgacgtcatcgatgacgtcattttataagctat
tttcctttatagcttctaaaatattgattttcaggtatatgttgtgatac
tttttggaatcctcggataaatatctttcatttgagccatattTGAGCTT
TCATTTTCAATCCCCAGCAATAGTGATGACGTCACACGGGGACcagtaaa
attctcaaaatttttctcaccactcgtttttgtgatcttatattatctaa
ttgatcatttagaaaacttagtttgcttttaacaactctgtgcacacgaa
ggatgttttcagaacatagtggctctcactagcactacttttatttttgt
gttttccaTTTTTAGCTGTCTAGAGCATTGGATGCGAGAGAGAAGCAACT
GTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTCTGATGAAAATACA
CCCTTATTGAGAAGCTACACAATCGATGTTTAATGTGaggattattttat
tttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTGTTGTGTTTTACCT
ACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTCTATTTTTGAATCC
TCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCATGATTTGTGATTT
GTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTAG
CTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTTT
GTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGT
GCCGAATGAAATTTCATCTANTGTGTTTTTCCCGGCTGTGTTGTGTTTTA
CCTCTGTGTTTAAAAAATGCAATTATAGCAAAGAGCTTCTATTTTTGAAT
CCTCAAATTCTCTTCTTCATCCATAAGATGTAATCCTCATGATTTGTGTA
TATACAAAGTAGTgtttatgaaattgttttttctttgtgtttaaggTGAA
GAATGGTTACTCATTTGGTCATAATTGCCATTTTAGCTGTTGTTGTTGCT
TTTTTCCTTTCACACGACAAAATTACATTCATTTTTGTTGAGAAAGATGC
TGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGTGCCGAATGAAATTT
CATCTANGCAACTGTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTC
TGATGAAAATACACCCTTATTGAGAAGCTACACAATCGATGTTTAATGTG
aggattattttattttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTG
TTGTGTTTTACCTACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTC
TATTTTTGAATCCTCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCA
TGATTTGTGATTTGTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATA
ATTGCCATTTTAGCTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAAT
TACATTCATTTTTGTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGA
TTCTTTCAGGAGTGCCGAATGAAATTTCATCTACTGTATTTTGTACCCTT
AGTAAACTTGGTAACCAAGAATGCAGATTCCAGAACCTTTGTTTTTATAA
CAATCAATACACTTACTATTATGGCAAAAACTCTAAAGAAGAAGGATTAC
AATCAGAATCACCTTTTCTACTTGATTTATCAAGTGTAAGAAACCATAAT
GCAAAATACTTTCAATTTTCTAATAGAACTATGACAAAAAACACGAAATT
TCATTATATTCGTGGCAACACAATTTTGTTTCATCGATTCAATCCTGATA
ACCTGATGCATGTTATCCATGACGATTTACTTCCTTACTTTCACACTAGG
CGGAAATATTTTGACGGTAAAGAAGTGACTACTATCTTCATGGAGGGGCG
TGAAGATGGGCCTTTTTATGATTTATACACCTTATTCATGGAACGGATAT
TAACAGAGAGAAATCTCACTTCGATGACCTGCTTTGAGAATGTCATTATT
GGTGTAAGTCAAGAGGTCACATGGTACCAATATGGTTTCCATACCCCTCA
AGGACCAATCAATGTTGAGAATTATCCAACAAATGAATTACTTTCTTTCA
AAGATGAATTTATGAAGCGATTGAAGATGAATATGGATCAATCATTCACT
CTATCGAAGGTAGTTATCTTCAAACGCCAAGACACTAGACGAATTACAAA
TATGAACGAGTTAGTATTGAAACTATCAATGAGGTTCAAAGCTGAGGTTA
CCATATTGGATTTACAAGAGGACACTTTTGAAGACATCCTAACAGCAGTA
TCTAATGCCAAGCTTTTGATTGGTGTTCATGGTGCCCATTTAGTTACCAG
TCTCTTTCTCCCTCCTGGTGCCTTATTAATGGAAATTTATCCTTATGGGA
TACCTTCGGAGAACTATACACCATACAAAACTCTTGTATCGCTCATTGGG
GTCCAGTATTTAGCCTTTGAAACAGAATCAGAAGACTTGTCAACGAATTT
TATCGACCGCCCACCAAATCAAGGCGGTATCGCACACCTACCACCACACC
AAAAAGAGGAAATTTTGAACACAAAGAGAGTTCCCGAACATCTTTGTTGT
GACAACCCTTTCTGGTTGTTTAGGATTTACCAAGACACCGAGGTTGATAT
CAATAGGTTTTTACCACTTTTACATGGTAGAATTTCCTAATTCTTTTAAT
TGTATTGGATAAGATTTTTATCTGTGCTCCAGAAAACTATCAGATACTAG
ATTAGGTGAAACTTGAAAGGGCTAATCTTTGATAAAGCCTTGACAGCAAA
CATCTGTTGGATTAAAATTgaggttttctttaaaaaatgttacTTGTTAA
AAGGTTTCATAGACGAAACATAAAAAATCTGATTACCctccttaaatttt
atcgatatTACCTATAATTGCCTCCCTCGATTGTAATTCTATCTTCGATC
TTCATTTGAATCATGGAGAgagttttatattattttccaGTTTAAGTGGG
GGGGGGCAGCATGTTTCAGTTCGAATTACAGGaaagattcaaaattttag
aagatATCTGCAGAAATACGTAAATTTCTAGTACAGTAAGCCAAATGGGA
AGATTCTATTTGGctttttaacaaaatattttgtaactttttttagtTTA
TATACAATGTACGcattcaaatcatttttttagaagaaatttagcaattt
ttattttttgagaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069896-exon-scaffold_511-1491911889:322502..322561 | TCONS_00069896-exon-scaffold_511-1491911889:322502..322561 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1510915933:322502..322561 | TCONS_00069896-exon-scaffold_511-1510915933:322502..322561 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1575043694:322502..322561 | TCONS_00069896-exon-scaffold_511-1575043694:322502..322561 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1491911889:322776..322855 | TCONS_00069896-exon-scaffold_511-1491911889:322776..322855 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1510915933:322776..322855 | TCONS_00069896-exon-scaffold_511-1510915933:322776..322855 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1575043694:322776..322855 | TCONS_00069896-exon-scaffold_511-1575043694:322776..322855 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1491911889:323567..323685 | TCONS_00069896-exon-scaffold_511-1491911889:323567..323685 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1510915933:323567..323685 | TCONS_00069896-exon-scaffold_511-1510915933:323567..323685 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1575043694:323567..323685 | TCONS_00069896-exon-scaffold_511-1575043694:323567..323685 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1491911889:325101..326468 | TCONS_00069896-exon-scaffold_511-1491911889:325101..326468 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1510915933:325101..326468 | TCONS_00069896-exon-scaffold_511-1510915933:325101..326468 | Clytia hemisphaerica | exon |
| TCONS_00069896-exon-scaffold_511-1575043694:325101..326468 | TCONS_00069896-exon-scaffold_511-1575043694:325101..326468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:322502..326468 + |
Blast
BLAST of TCONS_00069896 vs. Swiss-Prot (Human)
Match: PMGT2 (Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Homo sapiens GN=POMGNT2 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 3.726e-54 Identity = 110/271 (40.59%), Postives = 159/271 (58.67%), Query Frame = 3
Query: 276 GKEVTTIFMEGREDGPFYDLYTLFMER--ILTE--RNLTSMTCFENVIIGVSQEVTWYQYGFHTPQGPINVENYPTNELLSFKDEFMKRLKMNMDQS---FTLSKVVIFKRQDTRRITNMNELVLKLSMRFKAEVTILDLQEDTFEDILTAVSNAKLLIGVHGAHLVTSLFLPPGALLMEIYPYGIPSENYTPYKTLVSLIG--VQYLAFETESEDLSTNFIDRPPNQGGIAHLPPHQKEEILNTKRVPEHLCCDNPFWLFRIYQDTEVDI 1061
E FMEG +G +DLY L + +L + L + CF + +G+S+ TWYQYGF PQGP NE+ F FM K+N+ + +++F R R I N EL+L L+ F+ + + L++ TF D++ VSNA +L+ +HGA LVT+LFLP GA ++E++PY + ++YTPYKTL L G +QY+A+ + + +RP +QGGI HL ++ IL ++ VP HLCC NP WLFRIYQDT+VDI
Sbjct: 186 AHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKITTWYQYGFVQPQGPKANILVSGNEIRQFA-RFMTE-KLNVSHTGVPLGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGATVVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRAEQARILQSREVPRHLCCRNPEWLFRIYQDTKVDI 454
The following BLAST results are available for this feature:
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