TCONS_00069899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069899
Unique NameTCONS_00069899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069899 ID=TCONS_00069899|Name=TCONS_00069899|organism=Clytia hemisphaerica|type=transcript|length=404bp
TTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTGT
GGAAACGAGacGTGTACAATTTGTTTGGAAGAGTTTGAACCATCAGAAGA
AATCAAGTTAACTCCTTGCAATCATGGATATCATCCTGACTGTCTAGAGC
ATTGGATGCGAGAGAGAAGCAACTGTCCCATGTGTCAAGCTCCTTTGAAG
AAAGACACTTCTGATGAAAATACACCCTTATTGAGAAGCTACACAATCGA
TGTTTAATGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTAGC
TGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTTTG
TTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGTG
CCGA
Run BLAST on NCBI

transcript from alignment at scaffold_511:322503..324006+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069899 ID=TCONS_00069899|Name=TCONS_00069899|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at scaffold_511:322503..324006+ (Clytia hemisphaerica)
TTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTGT
GGAAACGAGGTACCATTTGatctttaacatattttattTGTGGTTTTGAC
CTACCTgagcaaaaactttcaaaaccgtAATATTACTGTTTGCCCCATAC
TGAGATGTTTGTGccatctgaaaaaaaatcaagatatgAGATTGGACCCT
GTTTTCGTCATACCATATTGTCATGTCAATTTTAATACAATTTAGCTACC
ttagatatgtttttttttgtcagacGTGTACAATTTGTTTGGAAGAGTTT
GAACCATCAGAAGAAATCAAGTTAACTCCTTGCAATCATGGATATCATCC
TGAGTAAAAtcctttcttttgtttgatAGATCCTATCCATTTGTGaatat
tattcttttttttgagaatcagAGGATGACTTTGTTTACTGTCTTTAATT
TTTTAGATGGGATAGTTTTGCAATATTGCGCAGTATTACAACCTGTTATC
AGCTCATTTAAAAATATCTGAAATTATAGCCTATTTTACCCATTAtaata
aatcaatataaaaattatAAGCTAAAATATAagcttttcaaatttaaaaa
tgttcaaCTTTAAAATGGCTTCCATGAGTGTGTAAAAACCagcttaaaac
aaaaaattatggtcctctttcaaatgaaacaaaaaatttcgattttgaag
attttttgattgtcgatgacgtcatcgatgacgtcattttataagctatt
ttcctttatagcttctaaaatattgattttcaggtatatgttgtgatact
ttttggaatcctcggataaatatctttcatttgagccatattTGAGCTTT
CATTTTCAATCCCCAGCAATAGTGATGACGTCACACGGGGACcagtaaaa
ttctcaaaatttttctcaccactcgtttttgtgatcttatattatctaat
tgatcatttagaaaacttagtttgcttttaacaactctgtgcacacgaag
gatgttttcagaacatagtggctctcactagcactacttttatttttgtg
ttttccaTTTTTAGCTGTCTAGAGCATTGGATGCGAGAGAGAAGCAACTG
TCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTCTGATGAAAATACAC
CCTTATTGAGAAGCTACACAATCGATGTTTAATGTGaggattattttatt
ttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTGTTGTGTTTTACCTA
CTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTCTATTTTTGAATCCT
CAAATTCTCTTCTTCATCCATAAGATTTAATCCTCATGATTTGTGATTTG
TGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTAGC
TGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTTTG
TTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGTG
CCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043530XLOC_043530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069899-exon-scaffold_511-1491911889:322503..322561TCONS_00069899-exon-scaffold_511-1491911889:322503..322561Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1510915933:322503..322561TCONS_00069899-exon-scaffold_511-1510915933:322503..322561Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1575043694:322503..322561TCONS_00069899-exon-scaffold_511-1575043694:322503..322561Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1491911889:322776..322855TCONS_00069899-exon-scaffold_511-1491911889:322776..322855Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1510915933:322776..322855TCONS_00069899-exon-scaffold_511-1510915933:322776..322855Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1575043694:322776..322855TCONS_00069899-exon-scaffold_511-1575043694:322776..322855Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1491911889:323567..323685TCONS_00069899-exon-scaffold_511-1491911889:323567..323685Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1510915933:323567..323685TCONS_00069899-exon-scaffold_511-1510915933:323567..323685Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1575043694:323567..323685TCONS_00069899-exon-scaffold_511-1575043694:323567..323685Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1491911889:323861..324006TCONS_00069899-exon-scaffold_511-1491911889:323861..324006Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1510915933:323861..324006TCONS_00069899-exon-scaffold_511-1510915933:323861..324006Clytia hemisphaericaexon
TCONS_00069899-exon-scaffold_511-1575043694:323861..324006TCONS_00069899-exon-scaffold_511-1575043694:323861..324006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:322503..324006 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6272	22.6239	18.4728	19.6377	14.1366	4.13373	6.42605	10.7823	9.13755	11.778	11.3351	6.3609	7.24954	5.75804	6.03967	8.13973	1.73205	3.65402	1.56159	4.85715	2.35241	0	11.0141	11.3203	2.39353	3.82505	5.10548	1.01089	2.58002	3.89249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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