XLOC_043047 (gene) - C. hemisphaerica

Overview
NameXLOC_043047
Unique NameXLOC_043047
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_493:190178..197291+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043047 ID=XLOC_043047|Name=XLOC_043047|organism=Clytia hemisphaerica|type=gene|length=7114bp|location=Sequence derived from alignment at scaffold_493:190178..197291+ (Clytia hemisphaerica)
CTCAAAGCTGTTAGCTTTTCCGAGAATATCTTTACTCAAATATTTCTACT
GATATGCCAACAAAGTATTATATTACAATCTTCTTACTTTTATAGAATAG
TAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGAAGAGACGTTTAGG
GGAGAGCagtcgaaaatacaaaaaataatattCATTGGTTGTTTACTTCA
AGAATATGCATTGAAATGGGCAAGCCGACTATGTaagatgatttttttaa
attcctgCCTGGGAGGGGGGCACTGTCTGAAAACGGCAAAACGACTCTAT
GTGCTGTATTTAGGATACTAATTATAACACATTTGGTGTTAAATTGGACC
CTTAAGaagaattaaaaataattttgccgaaaatcaaGCCTAGTTTGCAA
TCTTTCCTATATCTTTCGAAATTAcactaatttctttttttcccaaattt
tacgGTCCATATAATGCATGCTGTAATAAATCATAATCctgaattctttt
tcttttttaaaattcttagaaaCGAGGCTTTCAATGGGTCAGGCCGTAGC
AAATTCCTGACGTTAATGTCCAAAATACGGGCCACGCAAACGTTAGGAGC
GACGTTGACCAGTAAAGGGAATCATGTACGTGCATCTGCAATGTACAAAA
AACTAATCAATGACTCATTGAGTATGCGTGAACATTTTACGCGCCAACAG
CAAAAGACGTTAGAAAGCGCGCTCAGTTTTATGGACGCTGATCCTCCGCA
AGacgaccaggctgtaaaccaagCTTGGAAAATGCGTTCAGCTATTGATA
CGGTCTATGACGAATGTATATCCGACTTTAACGACGTTCAATCCGCCATG
CCGTCGAATCTTCAATCCGTCATTAAAGACACCATCAATCTGGCGTCGGA
TTGCGTTGCCAACGGTAACCTTTCAAAAGCGTTTATGGAATATACTAAAT
TACTAAAACAGATGAAACAGAACCAGAAATACAAAGATTTGGTGTCACTG
ACTGCAAAGAATTTGGTGGATGGTTCTCTTTGCTTTGCAGAAACGAGTAC
AGAAGATATGTCCACTAAAGTCCGCAAGTTACGCGACAGTCTGGATCGTG
TCTATAATGAAATTCGCCTGCCCGATGTTTATGCACCCAGCTTGGGGCCA
TTGGTAAGTGTTTGGTACTTTCTTCTTCCAAAATTCTAGACTAGCCGAAT
CAGATTGTTTTACTTAGACAAATATAGTCTTTTTGAACTGCATCATTGTC
GGCCTCGTTCTCAAATAAAACACCAGCGCACAACGagagaaaaaattttg
gggATTTTTCAGAATGCGTTATcgtggaaaattgaaaaactgcCACCCCG
CCAAAACATTTATCGCCATAATTTTTAGTTTgttcatttcaaaaaatgct
catttttttggttaaaaaaagaaCCGACTCACCCTTCtttatttagtgat
tttgaTGCATACCAAAAAAAGTTCGTCCCTTAGATATGTTACCAATTTCT
TAAGTCTTAAGTTAACGCAGAGGAATATTCGTTCTTttagtttgttttct
tttaccTGCGTATATACTTCTCGTGATGAAAATTTCCATCATGTTTTTCT
TACATTCGGAAGCCTCTTGTGGTGAGATATTGACGTCTGTTTATTCTTAT
GAGAGCAACGAGGCAACATGATTGAAGCTATGAGACCACATACATACATG
CATAGTTTAGGCAAAAACTTTAAGCGGGACGATAACCCCTATGGACGCTA
CCTATCCTTTTTTCTATCAAACCATAAAATTGATTTTCCAAATCTCCTAA
TTTTCCTGGAATCGAGGTATCAAAATAATGAGCTTTTTGGCATTGCTTGC
TTGACTTTTGATtgaaatagtcctgaatgaaGTCTAGTAAATTTTGTGGC
AAATAGGAAATTGCCATCCTGACATTTGAAATTCGCTAAAAATTCTACTC
CCTTCGCTTGCAATCCAGATCTTTCGACATTCTGATATTTCTCATTCTTT
TTTACTAAGCTATCTAGCCTTACCAATGAcctttagggaaatactgaaaa
ctTTTCCAATAGTTTCTGATAGTTTTAAAATGTCTGGAAAAATGTGGCTT
TTGAGACTAAAAGTTTGGAATTTCCAGCTTGGCGAACCCGTAGCAACCCT
GAACagaacatgataagaatacttttaggctttaaaatcaaaaagttaaa
aacatccaaaggctttcaaaaattttcgatattcttataaaaaagagcgt
GTATTTAGTTACCTCTATTTCAAGATCTCGTTAAATTTGACTTTATTCAA
TTTTGTGGTGTAATTTGATATCAAGATTGGTACTTAGATGATTCCGACAA
GactaataaaaaaagttttcattggGATAATGATTCTGCATTGTCAATTA
TTATTCAGGGATTTATTTGAGGAAATAGAACAAATTTAACATGAAAAGTA
ACATTTCGCGAATTTTCTATATGCATGACAAAAATgatcatgattttttt
ttgttacctGTTATTTTACTTCCTGTCGAATTGCAAAACTCCTTTTCTAT
TGTCGAACACGGTTTGTCATGTCAATAAATTGTAATTATCTATAATTGCC
TCATTGTCGTTTACtatacattttttaaaacaCTCTTTTAATCAAAAATG
TTTTATGTTGGTGTTGACGTCAGAGTCGTTGTGGtatcattaaaaaattt
caaaatgtttttttgtaaaagtaatCAGCGTACAATTAATTGAACCCAAT
TGATTTCCATATGAAATGAAACAGGCCCAATATGATGCAAACCAAATATT
TCTTGCAACCTAGTTGCTGAAAAATACATACATAGTATTTTGTTGCCTCC
AATTTTTATTATTCTTAAGTATCTGAATTTGAACAGCCTTGCCTAAACCC
AGTTCCTAAAGTTAAGACCGAAAGTTGTGATTTagcacccctgtgtcata
gacccgctggaaccccagccccactcgaaaatttggctaaaagttcgttc
ccggtgggaaaaataccataGAATTTCGgacccactgggaaattgacttt
gatttcacccccattcgaaattcaatgtttaaaaattgcactccaaaacc
atccatactggatttttggacctaccccggtggaggtcctataaattaac
ctttgtccgttcgttagttaccagcttttctcaagattggctcattagtt
ttttataattttttgcgcaaagatgtgtaactataaaccctcaaatgtga
ccgagcccgattttcgaaaaaaaaaagatttctgcctcagaaaatataca
gtgggaaattcgaatttagcgctgtcctcacttactaaaataaaaaccaa
atttcggaagttacgctttctctaagaaagtaaaagaataacaaaatttg
attggctgtgttttcaaccgtcattaggatctgggaaattcaaactctca
acccaaaccatgctatatatttcaccATCAGTacatagaataagaaatca
tagcatggatctccaggctaggaAAGGtatcaccggggctgtgagacagg
ggtgtgatttAGGGCATGAACCAGGGATCATATACCTTTGACGGGTACAT
ACATTACGTGGAAAATAACATgtacttttttcatattgacaAATCTCAAT
TGCCCTTAACCAAAGTGCCATGGAAATAACAAtaagtgtttattttttct
attacGAATAACGAAGCAACAATAATAATGATACCATTCAAAACGATCGG
TATgtaaaagaaaacattaaattgGTTTCCTTTAtattgactgttttttt
aaagaagtcaaGGTCAGGGAATCCCCTCTGttcattacacgtttttttta
taaggaacacgtatatagggaacttgaggctgaaaacgGTCTGAAAAAAT
AAGGTATTGTTAAGGGACTACTCAGGATGagaacaacaaaaaaacttaaG
GAACAGACGGTTAAACTTGAATTTGCTCTCATTTACAAAAACCTAAACAG
ATAGATGGCAAAATATTGATGAAAAAACATTCAATAAGTAtcaattcgaa
ctaaaacattggtctcatcgaatttttctctaattcgaagaagattcttc
atgccttgaaaatcgaattagagagagtcaactgtatatttttatttttt
tcacatgcttgtttaaaaaaaagccGAACAAGATTAAAATTGATGTTCAT
ATTCGGTTGGTTCGGTTGGGAGTCTCCCCGAGCGGTAACTCTGGTCACGA
TACCACGCAATTTTTTGTACTCGGTCACGTTCAcgcaaatcaacaaaaaa
aatggataatcacgcatccctttgaaaaaaagttcgaatcacgcatcacg
gctcaatctttcaaatcacTGATCACGTTTTGAGCTCTGATCACGCAAGC
ACGAAAAAATGTACCTATCATTACATCACGCAGATCTCTTCGGACTTACG
ATAAGGCCTCTCCGAATTCACAATAGTTTTAAACTTGTTTTCATTCTGAT
TTCAGCAAAAATTGAACAAACGTGAGAAGTGGCAAAAGAAGAAAGGTTTG
ATGGTGATTGATTTTCGACAGAAAGACGGTTCACTATTTCAGTACGGTAT
GACAACGTGCAATGATCGAGTGATGGGCGGATCAAGTGAAGCCAACACAC
AATTCGATGAGGTTCGTGTGATAAAGTTCGCATTACCTTATtgcacgaat
attactagtcattttattaacacgatttgaaaaatttcatgttgataaaa
aaacccttaattaaaaccaaccATTTTCATTACTAcatgttaacgaccaa
ccaaatccaataagatcttgtaaaaactccagcttggcCCTTGcaaaagc
aataaaattcgtgttaatttttggCGTGTTAATCTATAGGGCGTTAAATA
CATCTTTACttatattcgtgtaataaggtataaagaaatttttataaaaa
aattaaattaaaatcgAGGGACCTTTGTTGAAAGCTAATTTATACATATA
TAACGCTGCCTGATCTCCATTTGAATATCATTGACCTGGCTTTAAATAGG
CTTTTTGATTTTGTCCCTTGAGacatgaaatgatttttttatgaatcgaa
agtagttttgataaaatccgaTGGGAGttgatcaccatggcaataatttc
aaaacgagacaagtgttgttcgtgacgtaatttatgaaaaggtctattaa
attTGTGACAACCCTTATATTTTCTAGGTCAAAGAATGCATCGAATTTTC
CGGATCCTTGTCTAAAAAAAACCGGGGTGGCTTTGCAAGTGTTCGCATTC
TACCAGATAATAAGGATGAAATGAAAGAATTGTTGAGTGGTACCAAAGCT
ATATCGTTAGAGGTAATGAACCTCGATACAAAAAATATTCGTTACAAATT
CCAAATGGCCAACGAGGCGCACTTGAAATCGTTTAATTGGCAAGCTGAAT
TTATTGTAGAACCGGATGGCGAATGGCACACTGTTGTTTTGGATTTGTAT
TCTTTTTGGCCTACCATGTTTGGTCACGTGTTATCGTCTCCTGGCAACGT
AGATTTTAGTAAAGTGGACTTTCTTGGTGTATTGATCAGTCACGTGACAG
TGGATGGGAAATTTAATCCGGACTTCGTAGAAGGTACTTTCGGTTTAGGT
GTGCGTTCGTTGAGCTTGatcaaagatgaagatgaaAGTTGACGCAAAGT
TTACGGCGTATTTCCACTGTGTAACTTTTCTTTATTTAGCTTTATTTGTG
TATCTTGCAGGTGACGATATGTTTTTTTTCGTTTAATCtgtctttgttaa
aagtgtaaaagttGTGTAtagaagaatttttttatctcgTGATGGAGTCA
CACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACACATGCAATGAG
AATGACGTCACAAATGAGTTGCCACACATGCAATGAGAATGACGTCACAG
ATGAGTCGCCACACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACA
CATGCAATGAGAATGACTTCACAAAGGAGTCGTCACACATGCAATGAGAA
TGACTTCACAAAGGAGTCGTCACACATGCAATGAGAATGACGTCACAAAG
GAGTCGTCACACATGCAATGAGAATGACGTCACAAAGGACTTGTCACCAT
AAAGTACCtctcaattgttattttaacNCAATGAGAATGACGTCACAAAG
GACTTGTCACCATAAAGTACCTCTCAATTGTTATTGTAATGGCATCATCT
CATCCCTGTTCCAACCAACGATTTAACTGGACAAGAAAGCAACGATTCTT
CTTGAACTCCATACAAAGATATTATTTGCCATGAACAATTTTAAATGGAT
TATTTTCATGCCCATAtaaagattttacaaatttttggtattattttcag
tttctatcttttgaaaatttcactaTTCTATGTGGATCAGAATTGGGTCA
ATTAGGTGCCCTTTTCACATTCTGAGTGAGTGTTGTTCATTCAAGATTAC
AAATTGTGATTACCAAATAAGTTCGATAACTTTCCGcgcttttttttcga
aagaatATGGTTTCTCTTTTGTAAGATGAATGAATAAGCTTGTTATCAGC
ATTTTTCATGTGCGAATTCTATTTTGATTCCACTTTtaaaaaccattaaa
atttctttgggatttgaaataaatatatctACTCTTGTGTATATAATAAG
CTAAATTGGTCATTTTCTGAACAGTATTGGGCTGTTCTGTTTAATATCCA
TATGCTACCCTTCAGAATAACTTTAAGCCCTCGCGAAATCAAAATTATTA
TTTCGCCCCTGGAAATAGATATAGAAAGACCAACCAACCCCTTTGAAAAA
ATACANcatcatgacatttagtgacgtggtggtactgcaaaaaagctcaa
aaatgattttagtaccatgtgtactaaaataccaaaaagggtggtcccct
taaaggaatttttgaaaaatcttagtattttgttttaaaatcagccaaaa
tggagcatttttttaacaattttggaaaaaatttgattttttttttcagg
aattttcgaaaaaatcttcagaatttttccaattttaaaaatatttttat
gtacagttcagcaA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069067TCONS_00069067Clytia hemisphaericatranscript
TCONS_00069068TCONS_00069068Clytia hemisphaericatranscript
TCONS_00069069TCONS_00069069Clytia hemisphaericatranscript
TCONS_00069070TCONS_00069070Clytia hemisphaericatranscript
TCONS_00069071TCONS_00069071Clytia hemisphaericatranscript
TCONS_00069072TCONS_00069072Clytia hemisphaericatranscript
TCONS_00069073TCONS_00069073Clytia hemisphaericatranscript
TCONS_00069074TCONS_00069074Clytia hemisphaericatranscript
TCONS_00069075TCONS_00069075Clytia hemisphaericatranscript
TCONS_00069076TCONS_00069076Clytia hemisphaericatranscript
TCONS_00069077TCONS_00069077Clytia hemisphaericatranscript
TCONS_00069078TCONS_00069078Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069075-proteinTCONS_00069075-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:190178..197291 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
83.16	79.92	176.29	187.17	69.25	53.04	71.44	69.11	101.28	103.21	66.14	90.14	81.51	72.44	91.48	55.18	71	62.27	43.53	65.05	57.68	60.66	68.22	72.78	80.93	75.58	48.81	37.77	39.67	43.07