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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069067 ID=TCONS_00069067|Name=TCONS_00069067|organism=Clytia hemisphaerica|type=transcript|length=2724bp
CTCAAAGCTGTTAGCTTTTCCGAGAATATCTTTACTCAAATATTTCTACT
GATATGCCAACAAAGTATTATATTACAATCTTCTTACTTTTATAGAATAG
TAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGAAGAGACGTTTAGG
GGAGAGCagtcgaaaatacaaaaaataatattCATTGGTTGTTTACTTCA
AGAATATGCATTGAAATGGGCAAGCCGACTATaaaCGAGGCTTTCAATGG
GTCAGGCCGTAGCAAATTCCTGACGTTAATGTCCAAAATACGGGCCACGC
AAACGTTAGGAGCGACGTTGACCAGTAAAGGGAATCATGTACGTGCATCT
GCAATGTACAAAAAACTAATCAATGACTCATTGAGTATGCGTGAACATTT
TACGCGCCAACAGCAAAAGACGTTAGAAAGCGCGCTCAGTTTTATGGACG
CTGATCCTCCGCAAGacgaccaggctgtaaaccaagCTTGGAAAATGCGT
TCAGCTATTGATACGGTCTATGACGAATGTATATCCGACTTTAACGACGT
TCAATCCGCCATGCCGTCGAATCTTCAATCCGTCATTAAAGACACCATCA
ATCTGGCGTCGGATTGCGTTGCCAACGGTAACCTTTCAAAAGCGTTTATG
GAATATACTAAATTACTAAAACAGATGAAACAGAACCAGAAATACAAAGA
TTTGGTGTCACTGACTGCAAAGAATTTGGTGGATGGTTCTCTTTGCTTTG
CAGAAACGAGTACAGAAGATATGTCCACTAAAGTCCGCAAGTTACGCGAC
AGTCTGGATCGTGTCTATAATGAAATTCGCCTGCCCGATGTTTATGCACC
CAGCTTGGGGCCATTGCAAAAATTGAACAAACGTGAGAAGTGGCAAAAGA
AGAAAGGTTTGATGGTGATTGATTTTCGACAGAAAGACGGTTCACTATTT
CAGTACGGTATGACAACGTGCAATGATCGAGTGATGGGCGGATCAAGTGA
AGCCAACACACAATTCGATGAGGTCAAAGAATGCATCGAATTTTCCGGAT
CCTTGTCTAAAAAAAACCGGGGTGGCTTTGCAAGTGTTCGCATTCTACCA
GATAATAAGGATGAAATGAAAGAATTGTTGAGTGGTACCAAAGCTATATC
GTTAGAGGTAATGAACCTCGATACAAAAAATATTCGTTACAAATTCCAAA
TGGCCAACGAGGCGCACTTGAAATCGTTTAATTGGCAAGCTGAATTTATT
GTAGAACCGGATGGCGAATGGCACACTGTTGTTTTGGATTTGTATTCTTT
TTGGCCTACCATGTTTGGTCACGTGTTATCGTCTCCTGGCAACGTAGATT
TTAGTAAAGTGGACTTTCTTGGTGTATTGATCAGTCACGTGACAGTGGAT
GGGAAATTTAATCCGGACTTCGTAGAAGGTACTTTCGGTTTAGGTGTGCG
TTCGTTGAGCTTGatcaaagatgaagatgaaAGTTGACGCAAAGTTTACG
GCGTATTTCCACTGTGTAACTTTTCTTTATTTAGCTTTATTTGTGTATCT
TGCAGGTGACGATATGTTTTTTTTCGTTTAATCtgtctttgttaaaagtg
taaaagttGTGTAtagaagaatttttttatctcgTGATGGAGTCACACAT
GCAATGAGAATGACGTCACAAAGGAGTCGTCACACATGCAATGAGAATGA
CGTCACAAAGGAGTCGTCACACATGCAATGAGAATGACGTCACAAAGGAC
TTGTCACCATAAAGTACCtctcaattgttattttaacNCAATGAGAATGA
CGTCACAAAGGACTTGTCACCATAAAGTACCTCTCAATTGTTATTGTAAT
GGCATCATCTCATCCCTGTTCCAACCAACGATTTAACTGGACAAGAAAGC
AACGATTCTTCTTGAACTCCATACAAAGATATTATTTGCCATGAACAATT
TTAAATGGATTATTTTCATGCCCATAtaaagattttacaaatttttggta
ttattttcagtttctatcttttgaaaatttcactaTTCTATGTGGATCAG
AATTGGGTCAATTAGGTGCCCTTTTCACATTCTGAGTGAGTGTTGTTCAT
TCAAGATTACAAATTGTGATTACCAAATAAGTTCGATAACTTTCCGcgct
tttttttcgaaagaatATGGTTTCTCTTTTGTAAGATGAATGAATAAGCT
TGTTATCAGCATTTTTCATGTGCGAATTCTATTTTGATTCCACTTTtaaa
aaccattaaaatttctttgggatttgaaataaatatatctACTCTTGTGT
ATATAATAAGCTAAATTGGTCATTTTCTGAACAGTATTGGGCTGTTCTGT
TTAATATCCATATGCTACCCTTCAGAATAACTTTAAGCCCTCGCGAAATC
AAAATTATTATTTCGCCCCTGGAAATAGATATAGAAAGACCAACCAACCC
CTTTGAAAAAATACANcatcatgacatttagtgacgtggtggtactgcaa
aaaagctcaaaaatgattttagtaccatgtgtactaaaataccaaaaagg
gtggtccccttaaaggaatttttgaaaaatcttagtattttgttttaaaa
tcagccaaaatggagcatttttttaacaattttggaaaaaatttgatttt
ttttttcaggaattttcgaaaaaatcttcagaatttttccaattttaaaa
atatttttatgtacagttcagcaA Run BLAST on NCBI transcript from alignment at scaffold_493:190178..197291+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069067 ID=TCONS_00069067|Name=TCONS_00069067|organism=Clytia hemisphaerica|type=transcript|length=7114bp|location=Sequence derived from alignment at scaffold_493:190178..197291+ (Clytia hemisphaerica)
CTCAAAGCTGTTAGCTTTTCCGAGAATATCTTTACTCAAATATTTCTACT
GATATGCCAACAAAGTATTATATTACAATCTTCTTACTTTTATAGAATAG
TAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGAAGAGACGTTTAGG
GGAGAGCagtcgaaaatacaaaaaataatattCATTGGTTGTTTACTTCA
AGAATATGCATTGAAATGGGCAAGCCGACTATGTaagatgatttttttaa
attcctgCCTGGGAGGGGGGCACTGTCTGAAAACGGCAAAACGACTCTAT
GTGCTGTATTTAGGATACTAATTATAACACATTTGGTGTTAAATTGGACC
CTTAAGaagaattaaaaataattttgccgaaaatcaaGCCTAGTTTGCAA
TCTTTCCTATATCTTTCGAAATTAcactaatttctttttttcccaaattt
tacgGTCCATATAATGCATGCTGTAATAAATCATAATCctgaattctttt
tcttttttaaaattcttagaaaCGAGGCTTTCAATGGGTCAGGCCGTAGC
AAATTCCTGACGTTAATGTCCAAAATACGGGCCACGCAAACGTTAGGAGC
GACGTTGACCAGTAAAGGGAATCATGTACGTGCATCTGCAATGTACAAAA
AACTAATCAATGACTCATTGAGTATGCGTGAACATTTTACGCGCCAACAG
CAAAAGACGTTAGAAAGCGCGCTCAGTTTTATGGACGCTGATCCTCCGCA
AGacgaccaggctgtaaaccaagCTTGGAAAATGCGTTCAGCTATTGATA
CGGTCTATGACGAATGTATATCCGACTTTAACGACGTTCAATCCGCCATG
CCGTCGAATCTTCAATCCGTCATTAAAGACACCATCAATCTGGCGTCGGA
TTGCGTTGCCAACGGTAACCTTTCAAAAGCGTTTATGGAATATACTAAAT
TACTAAAACAGATGAAACAGAACCAGAAATACAAAGATTTGGTGTCACTG
ACTGCAAAGAATTTGGTGGATGGTTCTCTTTGCTTTGCAGAAACGAGTAC
AGAAGATATGTCCACTAAAGTCCGCAAGTTACGCGACAGTCTGGATCGTG
TCTATAATGAAATTCGCCTGCCCGATGTTTATGCACCCAGCTTGGGGCCA
TTGGTAAGTGTTTGGTACTTTCTTCTTCCAAAATTCTAGACTAGCCGAAT
CAGATTGTTTTACTTAGACAAATATAGTCTTTTTGAACTGCATCATTGTC
GGCCTCGTTCTCAAATAAAACACCAGCGCACAACGagagaaaaaattttg
gggATTTTTCAGAATGCGTTATcgtggaaaattgaaaaactgcCACCCCG
CCAAAACATTTATCGCCATAATTTTTAGTTTgttcatttcaaaaaatgct
catttttttggttaaaaaaagaaCCGACTCACCCTTCtttatttagtgat
tttgaTGCATACCAAAAAAAGTTCGTCCCTTAGATATGTTACCAATTTCT
TAAGTCTTAAGTTAACGCAGAGGAATATTCGTTCTTttagtttgttttct
tttaccTGCGTATATACTTCTCGTGATGAAAATTTCCATCATGTTTTTCT
TACATTCGGAAGCCTCTTGTGGTGAGATATTGACGTCTGTTTATTCTTAT
GAGAGCAACGAGGCAACATGATTGAAGCTATGAGACCACATACATACATG
CATAGTTTAGGCAAAAACTTTAAGCGGGACGATAACCCCTATGGACGCTA
CCTATCCTTTTTTCTATCAAACCATAAAATTGATTTTCCAAATCTCCTAA
TTTTCCTGGAATCGAGGTATCAAAATAATGAGCTTTTTGGCATTGCTTGC
TTGACTTTTGATtgaaatagtcctgaatgaaGTCTAGTAAATTTTGTGGC
AAATAGGAAATTGCCATCCTGACATTTGAAATTCGCTAAAAATTCTACTC
CCTTCGCTTGCAATCCAGATCTTTCGACATTCTGATATTTCTCATTCTTT
TTTACTAAGCTATCTAGCCTTACCAATGAcctttagggaaatactgaaaa
ctTTTCCAATAGTTTCTGATAGTTTTAAAATGTCTGGAAAAATGTGGCTT
TTGAGACTAAAAGTTTGGAATTTCCAGCTTGGCGAACCCGTAGCAACCCT
GAACagaacatgataagaatacttttaggctttaaaatcaaaaagttaaa
aacatccaaaggctttcaaaaattttcgatattcttataaaaaagagcgt
GTATTTAGTTACCTCTATTTCAAGATCTCGTTAAATTTGACTTTATTCAA
TTTTGTGGTGTAATTTGATATCAAGATTGGTACTTAGATGATTCCGACAA
GactaataaaaaaagttttcattggGATAATGATTCTGCATTGTCAATTA
TTATTCAGGGATTTATTTGAGGAAATAGAACAAATTTAACATGAAAAGTA
ACATTTCGCGAATTTTCTATATGCATGACAAAAATgatcatgattttttt
ttgttacctGTTATTTTACTTCCTGTCGAATTGCAAAACTCCTTTTCTAT
TGTCGAACACGGTTTGTCATGTCAATAAATTGTAATTATCTATAATTGCC
TCATTGTCGTTTACtatacattttttaaaacaCTCTTTTAATCAAAAATG
TTTTATGTTGGTGTTGACGTCAGAGTCGTTGTGGtatcattaaaaaattt
caaaatgtttttttgtaaaagtaatCAGCGTACAATTAATTGAACCCAAT
TGATTTCCATATGAAATGAAACAGGCCCAATATGATGCAAACCAAATATT
TCTTGCAACCTAGTTGCTGAAAAATACATACATAGTATTTTGTTGCCTCC
AATTTTTATTATTCTTAAGTATCTGAATTTGAACAGCCTTGCCTAAACCC
AGTTCCTAAAGTTAAGACCGAAAGTTGTGATTTagcacccctgtgtcata
gacccgctggaaccccagccccactcgaaaatttggctaaaagttcgttc
ccggtgggaaaaataccataGAATTTCGgacccactgggaaattgacttt
gatttcacccccattcgaaattcaatgtttaaaaattgcactccaaaacc
atccatactggatttttggacctaccccggtggaggtcctataaattaac
ctttgtccgttcgttagttaccagcttttctcaagattggctcattagtt
ttttataattttttgcgcaaagatgtgtaactataaaccctcaaatgtga
ccgagcccgattttcgaaaaaaaaaagatttctgcctcagaaaatataca
gtgggaaattcgaatttagcgctgtcctcacttactaaaataaaaaccaa
atttcggaagttacgctttctctaagaaagtaaaagaataacaaaatttg
attggctgtgttttcaaccgtcattaggatctgggaaattcaaactctca
acccaaaccatgctatatatttcaccATCAGTacatagaataagaaatca
tagcatggatctccaggctaggaAAGGtatcaccggggctgtgagacagg
ggtgtgatttAGGGCATGAACCAGGGATCATATACCTTTGACGGGTACAT
ACATTACGTGGAAAATAACATgtacttttttcatattgacaAATCTCAAT
TGCCCTTAACCAAAGTGCCATGGAAATAACAAtaagtgtttattttttct
attacGAATAACGAAGCAACAATAATAATGATACCATTCAAAACGATCGG
TATgtaaaagaaaacattaaattgGTTTCCTTTAtattgactgttttttt
aaagaagtcaaGGTCAGGGAATCCCCTCTGttcattacacgtttttttta
taaggaacacgtatatagggaacttgaggctgaaaacgGTCTGAAAAAAT
AAGGTATTGTTAAGGGACTACTCAGGATGagaacaacaaaaaaacttaaG
GAACAGACGGTTAAACTTGAATTTGCTCTCATTTACAAAAACCTAAACAG
ATAGATGGCAAAATATTGATGAAAAAACATTCAATAAGTAtcaattcgaa
ctaaaacattggtctcatcgaatttttctctaattcgaagaagattcttc
atgccttgaaaatcgaattagagagagtcaactgtatatttttatttttt
tcacatgcttgtttaaaaaaaagccGAACAAGATTAAAATTGATGTTCAT
ATTCGGTTGGTTCGGTTGGGAGTCTCCCCGAGCGGTAACTCTGGTCACGA
TACCACGCAATTTTTTGTACTCGGTCACGTTCAcgcaaatcaacaaaaaa
aatggataatcacgcatccctttgaaaaaaagttcgaatcacgcatcacg
gctcaatctttcaaatcacTGATCACGTTTTGAGCTCTGATCACGCAAGC
ACGAAAAAATGTACCTATCATTACATCACGCAGATCTCTTCGGACTTACG
ATAAGGCCTCTCCGAATTCACAATAGTTTTAAACTTGTTTTCATTCTGAT
TTCAGCAAAAATTGAACAAACGTGAGAAGTGGCAAAAGAAGAAAGGTTTG
ATGGTGATTGATTTTCGACAGAAAGACGGTTCACTATTTCAGTACGGTAT
GACAACGTGCAATGATCGAGTGATGGGCGGATCAAGTGAAGCCAACACAC
AATTCGATGAGGTTCGTGTGATAAAGTTCGCATTACCTTATtgcacgaat
attactagtcattttattaacacgatttgaaaaatttcatgttgataaaa
aaacccttaattaaaaccaaccATTTTCATTACTAcatgttaacgaccaa
ccaaatccaataagatcttgtaaaaactccagcttggcCCTTGcaaaagc
aataaaattcgtgttaatttttggCGTGTTAATCTATAGGGCGTTAAATA
CATCTTTACttatattcgtgtaataaggtataaagaaatttttataaaaa
aattaaattaaaatcgAGGGACCTTTGTTGAAAGCTAATTTATACATATA
TAACGCTGCCTGATCTCCATTTGAATATCATTGACCTGGCTTTAAATAGG
CTTTTTGATTTTGTCCCTTGAGacatgaaatgatttttttatgaatcgaa
agtagttttgataaaatccgaTGGGAGttgatcaccatggcaataatttc
aaaacgagacaagtgttgttcgtgacgtaatttatgaaaaggtctattaa
attTGTGACAACCCTTATATTTTCTAGGTCAAAGAATGCATCGAATTTTC
CGGATCCTTGTCTAAAAAAAACCGGGGTGGCTTTGCAAGTGTTCGCATTC
TACCAGATAATAAGGATGAAATGAAAGAATTGTTGAGTGGTACCAAAGCT
ATATCGTTAGAGGTAATGAACCTCGATACAAAAAATATTCGTTACAAATT
CCAAATGGCCAACGAGGCGCACTTGAAATCGTTTAATTGGCAAGCTGAAT
TTATTGTAGAACCGGATGGCGAATGGCACACTGTTGTTTTGGATTTGTAT
TCTTTTTGGCCTACCATGTTTGGTCACGTGTTATCGTCTCCTGGCAACGT
AGATTTTAGTAAAGTGGACTTTCTTGGTGTATTGATCAGTCACGTGACAG
TGGATGGGAAATTTAATCCGGACTTCGTAGAAGGTACTTTCGGTTTAGGT
GTGCGTTCGTTGAGCTTGatcaaagatgaagatgaaAGTTGACGCAAAGT
TTACGGCGTATTTCCACTGTGTAACTTTTCTTTATTTAGCTTTATTTGTG
TATCTTGCAGGTGACGATATGTTTTTTTTCGTTTAATCtgtctttgttaa
aagtgtaaaagttGTGTAtagaagaatttttttatctcgTGATGGAGTCA
CACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACACATGCAATGAG
AATGACGTCACAAATGAGTTGCCACACATGCAATGAGAATGACGTCACAG
ATGAGTCGCCACACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACA
CATGCAATGAGAATGACTTCACAAAGGAGTCGTCACACATGCAATGAGAA
TGACTTCACAAAGGAGTCGTCACACATGCAATGAGAATGACGTCACAAAG
GAGTCGTCACACATGCAATGAGAATGACGTCACAAAGGACTTGTCACCAT
AAAGTACCtctcaattgttattttaacNCAATGAGAATGACGTCACAAAG
GACTTGTCACCATAAAGTACCTCTCAATTGTTATTGTAATGGCATCATCT
CATCCCTGTTCCAACCAACGATTTAACTGGACAAGAAAGCAACGATTCTT
CTTGAACTCCATACAAAGATATTATTTGCCATGAACAATTTTAAATGGAT
TATTTTCATGCCCATAtaaagattttacaaatttttggtattattttcag
tttctatcttttgaaaatttcactaTTCTATGTGGATCAGAATTGGGTCA
ATTAGGTGCCCTTTTCACATTCTGAGTGAGTGTTGTTCATTCAAGATTAC
AAATTGTGATTACCAAATAAGTTCGATAACTTTCCGcgcttttttttcga
aagaatATGGTTTCTCTTTTGTAAGATGAATGAATAAGCTTGTTATCAGC
ATTTTTCATGTGCGAATTCTATTTTGATTCCACTTTtaaaaaccattaaa
atttctttgggatttgaaataaatatatctACTCTTGTGTATATAATAAG
CTAAATTGGTCATTTTCTGAACAGTATTGGGCTGTTCTGTTTAATATCCA
TATGCTACCCTTCAGAATAACTTTAAGCCCTCGCGAAATCAAAATTATTA
TTTCGCCCCTGGAAATAGATATAGAAAGACCAACCAACCCCTTTGAAAAA
ATACANcatcatgacatttagtgacgtggtggtactgcaaaaaagctcaa
aaatgattttagtaccatgtgtactaaaataccaaaaagggtggtcccct
taaaggaatttttgaaaaatcttagtattttgttttaaaatcagccaaaa
tggagcatttttttaacaattttggaaaaaatttgattttttttttcagg
aattttcgaaaaaatcttcagaatttttccaattttaaaaatatttttat
gtacagttcagcaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069067-exon-scaffold_493-1491911889:190178..190409 | TCONS_00069067-exon-scaffold_493-1491911889:190178..190409 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1510915933:190178..190409 | TCONS_00069067-exon-scaffold_493-1510915933:190178..190409 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1575043694:190178..190409 | TCONS_00069067-exon-scaffold_493-1575043694:190178..190409 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1491911889:190697..191330 | TCONS_00069067-exon-scaffold_493-1491911889:190697..191330 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1510915933:190697..191330 | TCONS_00069067-exon-scaffold_493-1510915933:190697..191330 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1575043694:190697..191330 | TCONS_00069067-exon-scaffold_493-1575043694:190697..191330 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1491911889:194683..194838 | TCONS_00069067-exon-scaffold_493-1491911889:194683..194838 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1510915933:194683..194838 | TCONS_00069067-exon-scaffold_493-1510915933:194683..194838 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1575043694:194683..194838 | TCONS_00069067-exon-scaffold_493-1575043694:194683..194838 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1491911889:195405..196067 | TCONS_00069067-exon-scaffold_493-1491911889:195405..196067 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1510915933:195405..196067 | TCONS_00069067-exon-scaffold_493-1510915933:195405..196067 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1575043694:195405..196067 | TCONS_00069067-exon-scaffold_493-1575043694:195405..196067 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1491911889:196253..197291 | TCONS_00069067-exon-scaffold_493-1491911889:196253..197291 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1510915933:196253..197291 | TCONS_00069067-exon-scaffold_493-1510915933:196253..197291 | Clytia hemisphaerica | exon |
| TCONS_00069067-exon-scaffold_493-1575043694:196253..197291 | TCONS_00069067-exon-scaffold_493-1575043694:196253..197291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_493 | supercontig | scaffold_493:190178..197291 + |
Blast
The following BLAST results are available for this feature:
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