TCONS_00069068 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069068
Unique Name	TCONS_00069068
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2798

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_493:190178..197291+

transcript sequence

>TCONS_00069068 ID=TCONS_00069068|Name=TCONS_00069068|organism=Clytia hemisphaerica|type=transcript|length=2798bp
CTCAAAGCTGTTAGCTTTTCCGAGAATATCTTTACTCAAATATTTCTACT
GATATGCCAACAAAGTATTATATTACAATCTTCTTACTTTTATAGAATAG
TAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGAAGAGACGTTTAGG
GGAGAGCagtcgaaaatacaaaaaataatattCATTGGTTGTTTACTTCA
AGAATATGCATTGAAATGGGCAAGCCGACTATaaaCGAGGCTTTCAATGG
GTCAGGCCGTAGCAAATTCCTGACGTTAATGTCCAAAATACGGGCCACGC
AAACGTTAGGAGCGACGTTGACCAGTAAAGGGAATCATGTACGTGCATCT
GCAATGTACAAAAAACTAATCAATGACTCATTGAGTATGCGTGAACATTT
TACGCGCCAACAGCAAAAGACGTTAGAAAGCGCGCTCAGTTTTATGGACG
CTGATCCTCCGCAAGacgaccaggctgtaaaccaagCTTGGAAAATGCGT
TCAGCTATTGATACGGTCTATGACGAATGTATATCCGACTTTAACGACGT
TCAATCCGCCATGCCGTCGAATCTTCAATCCGTCATTAAAGACACCATCA
ATCTGGCGTCGGATTGCGTTGCCAACGGTAACCTTTCAAAAGCGTTTATG
GAATATACTAAATTACTAAAACAGATGAAACAGAACCAGAAATACAAAGA
TTTGGTGTCACTGACTGCAAAGAATTTGGTGGATGGTTCTCTTTGCTTTG
CAGAAACGAGTACAGAAGATATGTCCACTAAAGTCCGCAAGTTACGCGAC
AGTCTGGATCGTGTCTATAATGAAATTCGCCTGCCCGATGTTTATGCACC
CAGCTTGGGGCCATTGCAAAAATTGAACAAACGTGAGAAGTGGCAAAAGA
AGAAAGGTTTGATGGTGATTGATTTTCGACAGAAAGACGGTTCACTATTT
CAGTACGGTATGACAACGTGCAATGATCGAGTGATGGGCGGATCAAGTGA
AGCCAACACACAATTCGATGAGGTCAAAGAATGCATCGAATTTTCCGGAT
CCTTGTCTAAAAAAAACCGGGGTGGCTTTGCAAGTGTTCGCATTCTACCA
GATAATAAGGATGAAATGAAAGAATTGTTGAGTGGTACCAAAGCTATATC
GTTAGAGGTAATGAACCTCGATACAAAAAATATTCGTTACAAATTCCAAA
TGGCCAACGAGGCGCACTTGAAATCGTTTAATTGGCAAGCTGAATTTATT
GTAGAACCGGATGGCGAATGGCACACTGTTGTTTTGGATTTGTATTCTTT
TTGGCCTACCATGTTTGGTCACGTGTTATCGTCTCCTGGCAACGTAGATT
TTAGTAAAGTGGACTTTCTTGGTGTATTGATCAGTCACGTGACAGTGGAT
GGGAAATTTAATCCGGACTTCGTAGAAGGTACTTTCGGTTTAGGTGTGCG
TTCGTTGAGCTTGatcaaagatgaagatgaaAGTTGACGCAAAGTTTACG
GCGTATTTCCACTGTGTAACTTTTCTTTATTTAGCTTTATTTGTGTATCT
TGCAGGTGACGATATGTTTTTTTTCGTTTAATCtgtctttgttaaaagtg
taaaagttGTGTAtagaagaatttttttatctcgTGATGGAGTCACACAT
GCAATGAGAATGACGTCACAAAGGAGTCGTCACACATGCAATGAGAATGA
CGTCACAAAGGAGTCGTCACACATGCAATGAGAATGACTTCACAAAGGAG
TCGTCACACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACACATGC
AATGAGAATGACGTCACAAAGGACTTGTCACCATAAAGTACCtctcaatt
gttattttaacNCAATGAGAATGACGTCACAAAGGACTTGTCACCATAAA
GTACCTCTCAATTGTTATTGTAATGGCATCATCTCATCCCTGTTCCAACC
AACGATTTAACTGGACAAGAAAGCAACGATTCTTCTTGAACTCCATACAA
AGATATTATTTGCCATGAACAATTTTAAATGGATTATTTTCATGCCCATA
taaagattttacaaatttttggtattattttcagtttctatcttttgaaa
atttcactaTTCTATGTGGATCAGAATTGGGTCAATTAGGTGCCCTTTTC
ACATTCTGAGTGAGTGTTGTTCATTCAAGATTACAAATTGTGATTACCAA
ATAAGTTCGATAACTTTCCGcgcttttttttcgaaagaatATGGTTTCTC
TTTTGTAAGATGAATGAATAAGCTTGTTATCAGCATTTTTCATGTGCGAA
TTCTATTTTGATTCCACTTTtaaaaaccattaaaatttctttgggatttg
aaataaatatatctACTCTTGTGTATATAATAAGCTAAATTGGTCATTTT
CTGAACAGTATTGGGCTGTTCTGTTTAATATCCATATGCTACCCTTCAGA
ATAACTTTAAGCCCTCGCGAAATCAAAATTATTATTTCGCCCCTGGAAAT
AGATATAGAAAGACCAACCAACCCCTTTGAAAAAATACANcatcatgaca
tttagtgacgtggtggtactgcaaaaaagctcaaaaatgattttagtacc
atgtgtactaaaataccaaaaagggtggtccccttaaaggaatttttgaa
aaatcttagtattttgttttaaaatcagccaaaatggagcatttttttaa
caattttggaaaaaatttgattttttttttcaggaattttcgaaaaaatc
ttcagaatttttccaattttaaaaatatttttatgtacagttcagcaA

Run BLAST on NCBI

transcript from alignment at scaffold_493:190178..197291+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069068 ID=TCONS_00069068|Name=TCONS_00069068|organism=Clytia hemisphaerica|type=transcript|length=7114bp|location=Sequence derived from alignment at scaffold_493:190178..197291+ (Clytia hemisphaerica)
CTCAAAGCTGTTAGCTTTTCCGAGAATATCTTTACTCAAATATTTCTACT
GATATGCCAACAAAGTATTATATTACAATCTTCTTACTTTTATAGAATAG
TAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGAAGAGACGTTTAGG
GGAGAGCagtcgaaaatacaaaaaataatattCATTGGTTGTTTACTTCA
AGAATATGCATTGAAATGGGCAAGCCGACTATGTaagatgatttttttaa
attcctgCCTGGGAGGGGGGCACTGTCTGAAAACGGCAAAACGACTCTAT
GTGCTGTATTTAGGATACTAATTATAACACATTTGGTGTTAAATTGGACC
CTTAAGaagaattaaaaataattttgccgaaaatcaaGCCTAGTTTGCAA
TCTTTCCTATATCTTTCGAAATTAcactaatttctttttttcccaaattt
tacgGTCCATATAATGCATGCTGTAATAAATCATAATCctgaattctttt
tcttttttaaaattcttagaaaCGAGGCTTTCAATGGGTCAGGCCGTAGC
AAATTCCTGACGTTAATGTCCAAAATACGGGCCACGCAAACGTTAGGAGC
GACGTTGACCAGTAAAGGGAATCATGTACGTGCATCTGCAATGTACAAAA
AACTAATCAATGACTCATTGAGTATGCGTGAACATTTTACGCGCCAACAG
CAAAAGACGTTAGAAAGCGCGCTCAGTTTTATGGACGCTGATCCTCCGCA
AGacgaccaggctgtaaaccaagCTTGGAAAATGCGTTCAGCTATTGATA
CGGTCTATGACGAATGTATATCCGACTTTAACGACGTTCAATCCGCCATG
CCGTCGAATCTTCAATCCGTCATTAAAGACACCATCAATCTGGCGTCGGA
TTGCGTTGCCAACGGTAACCTTTCAAAAGCGTTTATGGAATATACTAAAT
TACTAAAACAGATGAAACAGAACCAGAAATACAAAGATTTGGTGTCACTG
ACTGCAAAGAATTTGGTGGATGGTTCTCTTTGCTTTGCAGAAACGAGTAC
AGAAGATATGTCCACTAAAGTCCGCAAGTTACGCGACAGTCTGGATCGTG
TCTATAATGAAATTCGCCTGCCCGATGTTTATGCACCCAGCTTGGGGCCA
TTGGTAAGTGTTTGGTACTTTCTTCTTCCAAAATTCTAGACTAGCCGAAT
CAGATTGTTTTACTTAGACAAATATAGTCTTTTTGAACTGCATCATTGTC
GGCCTCGTTCTCAAATAAAACACCAGCGCACAACGagagaaaaaattttg
gggATTTTTCAGAATGCGTTATcgtggaaaattgaaaaactgcCACCCCG
CCAAAACATTTATCGCCATAATTTTTAGTTTgttcatttcaaaaaatgct
catttttttggttaaaaaaagaaCCGACTCACCCTTCtttatttagtgat
tttgaTGCATACCAAAAAAAGTTCGTCCCTTAGATATGTTACCAATTTCT
TAAGTCTTAAGTTAACGCAGAGGAATATTCGTTCTTttagtttgttttct
tttaccTGCGTATATACTTCTCGTGATGAAAATTTCCATCATGTTTTTCT
TACATTCGGAAGCCTCTTGTGGTGAGATATTGACGTCTGTTTATTCTTAT
GAGAGCAACGAGGCAACATGATTGAAGCTATGAGACCACATACATACATG
CATAGTTTAGGCAAAAACTTTAAGCGGGACGATAACCCCTATGGACGCTA
CCTATCCTTTTTTCTATCAAACCATAAAATTGATTTTCCAAATCTCCTAA
TTTTCCTGGAATCGAGGTATCAAAATAATGAGCTTTTTGGCATTGCTTGC
TTGACTTTTGATtgaaatagtcctgaatgaaGTCTAGTAAATTTTGTGGC
AAATAGGAAATTGCCATCCTGACATTTGAAATTCGCTAAAAATTCTACTC
CCTTCGCTTGCAATCCAGATCTTTCGACATTCTGATATTTCTCATTCTTT
TTTACTAAGCTATCTAGCCTTACCAATGAcctttagggaaatactgaaaa
ctTTTCCAATAGTTTCTGATAGTTTTAAAATGTCTGGAAAAATGTGGCTT
TTGAGACTAAAAGTTTGGAATTTCCAGCTTGGCGAACCCGTAGCAACCCT
GAACagaacatgataagaatacttttaggctttaaaatcaaaaagttaaa
aacatccaaaggctttcaaaaattttcgatattcttataaaaaagagcgt
GTATTTAGTTACCTCTATTTCAAGATCTCGTTAAATTTGACTTTATTCAA
TTTTGTGGTGTAATTTGATATCAAGATTGGTACTTAGATGATTCCGACAA
GactaataaaaaaagttttcattggGATAATGATTCTGCATTGTCAATTA
TTATTCAGGGATTTATTTGAGGAAATAGAACAAATTTAACATGAAAAGTA
ACATTTCGCGAATTTTCTATATGCATGACAAAAATgatcatgattttttt
ttgttacctGTTATTTTACTTCCTGTCGAATTGCAAAACTCCTTTTCTAT
TGTCGAACACGGTTTGTCATGTCAATAAATTGTAATTATCTATAATTGCC
TCATTGTCGTTTACtatacattttttaaaacaCTCTTTTAATCAAAAATG
TTTTATGTTGGTGTTGACGTCAGAGTCGTTGTGGtatcattaaaaaattt
caaaatgtttttttgtaaaagtaatCAGCGTACAATTAATTGAACCCAAT
TGATTTCCATATGAAATGAAACAGGCCCAATATGATGCAAACCAAATATT
TCTTGCAACCTAGTTGCTGAAAAATACATACATAGTATTTTGTTGCCTCC
AATTTTTATTATTCTTAAGTATCTGAATTTGAACAGCCTTGCCTAAACCC
AGTTCCTAAAGTTAAGACCGAAAGTTGTGATTTagcacccctgtgtcata
gacccgctggaaccccagccccactcgaaaatttggctaaaagttcgttc
ccggtgggaaaaataccataGAATTTCGgacccactgggaaattgacttt
gatttcacccccattcgaaattcaatgtttaaaaattgcactccaaaacc
atccatactggatttttggacctaccccggtggaggtcctataaattaac
ctttgtccgttcgttagttaccagcttttctcaagattggctcattagtt
ttttataattttttgcgcaaagatgtgtaactataaaccctcaaatgtga
ccgagcccgattttcgaaaaaaaaaagatttctgcctcagaaaatataca
gtgggaaattcgaatttagcgctgtcctcacttactaaaataaaaaccaa
atttcggaagttacgctttctctaagaaagtaaaagaataacaaaatttg
attggctgtgttttcaaccgtcattaggatctgggaaattcaaactctca
acccaaaccatgctatatatttcaccATCAGTacatagaataagaaatca
tagcatggatctccaggctaggaAAGGtatcaccggggctgtgagacagg
ggtgtgatttAGGGCATGAACCAGGGATCATATACCTTTGACGGGTACAT
ACATTACGTGGAAAATAACATgtacttttttcatattgacaAATCTCAAT
TGCCCTTAACCAAAGTGCCATGGAAATAACAAtaagtgtttattttttct
attacGAATAACGAAGCAACAATAATAATGATACCATTCAAAACGATCGG
TATgtaaaagaaaacattaaattgGTTTCCTTTAtattgactgttttttt
aaagaagtcaaGGTCAGGGAATCCCCTCTGttcattacacgtttttttta
taaggaacacgtatatagggaacttgaggctgaaaacgGTCTGAAAAAAT
AAGGTATTGTTAAGGGACTACTCAGGATGagaacaacaaaaaaacttaaG
GAACAGACGGTTAAACTTGAATTTGCTCTCATTTACAAAAACCTAAACAG
ATAGATGGCAAAATATTGATGAAAAAACATTCAATAAGTAtcaattcgaa
ctaaaacattggtctcatcgaatttttctctaattcgaagaagattcttc
atgccttgaaaatcgaattagagagagtcaactgtatatttttatttttt
tcacatgcttgtttaaaaaaaagccGAACAAGATTAAAATTGATGTTCAT
ATTCGGTTGGTTCGGTTGGGAGTCTCCCCGAGCGGTAACTCTGGTCACGA
TACCACGCAATTTTTTGTACTCGGTCACGTTCAcgcaaatcaacaaaaaa
aatggataatcacgcatccctttgaaaaaaagttcgaatcacgcatcacg
gctcaatctttcaaatcacTGATCACGTTTTGAGCTCTGATCACGCAAGC
ACGAAAAAATGTACCTATCATTACATCACGCAGATCTCTTCGGACTTACG
ATAAGGCCTCTCCGAATTCACAATAGTTTTAAACTTGTTTTCATTCTGAT
TTCAGCAAAAATTGAACAAACGTGAGAAGTGGCAAAAGAAGAAAGGTTTG
ATGGTGATTGATTTTCGACAGAAAGACGGTTCACTATTTCAGTACGGTAT
GACAACGTGCAATGATCGAGTGATGGGCGGATCAAGTGAAGCCAACACAC
AATTCGATGAGGTTCGTGTGATAAAGTTCGCATTACCTTATtgcacgaat
attactagtcattttattaacacgatttgaaaaatttcatgttgataaaa
aaacccttaattaaaaccaaccATTTTCATTACTAcatgttaacgaccaa
ccaaatccaataagatcttgtaaaaactccagcttggcCCTTGcaaaagc
aataaaattcgtgttaatttttggCGTGTTAATCTATAGGGCGTTAAATA
CATCTTTACttatattcgtgtaataaggtataaagaaatttttataaaaa
aattaaattaaaatcgAGGGACCTTTGTTGAAAGCTAATTTATACATATA
TAACGCTGCCTGATCTCCATTTGAATATCATTGACCTGGCTTTAAATAGG
CTTTTTGATTTTGTCCCTTGAGacatgaaatgatttttttatgaatcgaa
agtagttttgataaaatccgaTGGGAGttgatcaccatggcaataatttc
aaaacgagacaagtgttgttcgtgacgtaatttatgaaaaggtctattaa
attTGTGACAACCCTTATATTTTCTAGGTCAAAGAATGCATCGAATTTTC
CGGATCCTTGTCTAAAAAAAACCGGGGTGGCTTTGCAAGTGTTCGCATTC
TACCAGATAATAAGGATGAAATGAAAGAATTGTTGAGTGGTACCAAAGCT
ATATCGTTAGAGGTAATGAACCTCGATACAAAAAATATTCGTTACAAATT
CCAAATGGCCAACGAGGCGCACTTGAAATCGTTTAATTGGCAAGCTGAAT
TTATTGTAGAACCGGATGGCGAATGGCACACTGTTGTTTTGGATTTGTAT
TCTTTTTGGCCTACCATGTTTGGTCACGTGTTATCGTCTCCTGGCAACGT
AGATTTTAGTAAAGTGGACTTTCTTGGTGTATTGATCAGTCACGTGACAG
TGGATGGGAAATTTAATCCGGACTTCGTAGAAGGTACTTTCGGTTTAGGT
GTGCGTTCGTTGAGCTTGatcaaagatgaagatgaaAGTTGACGCAAAGT
TTACGGCGTATTTCCACTGTGTAACTTTTCTTTATTTAGCTTTATTTGTG
TATCTTGCAGGTGACGATATGTTTTTTTTCGTTTAATCtgtctttgttaa
aagtgtaaaagttGTGTAtagaagaatttttttatctcgTGATGGAGTCA
CACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACACATGCAATGAG
AATGACGTCACAAATGAGTTGCCACACATGCAATGAGAATGACGTCACAG
ATGAGTCGCCACACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACA
CATGCAATGAGAATGACTTCACAAAGGAGTCGTCACACATGCAATGAGAA
TGACTTCACAAAGGAGTCGTCACACATGCAATGAGAATGACGTCACAAAG
GAGTCGTCACACATGCAATGAGAATGACGTCACAAAGGACTTGTCACCAT
AAAGTACCtctcaattgttattttaacNCAATGAGAATGACGTCACAAAG
GACTTGTCACCATAAAGTACCTCTCAATTGTTATTGTAATGGCATCATCT
CATCCCTGTTCCAACCAACGATTTAACTGGACAAGAAAGCAACGATTCTT
CTTGAACTCCATACAAAGATATTATTTGCCATGAACAATTTTAAATGGAT
TATTTTCATGCCCATAtaaagattttacaaatttttggtattattttcag
tttctatcttttgaaaatttcactaTTCTATGTGGATCAGAATTGGGTCA
ATTAGGTGCCCTTTTCACATTCTGAGTGAGTGTTGTTCATTCAAGATTAC
AAATTGTGATTACCAAATAAGTTCGATAACTTTCCGcgcttttttttcga
aagaatATGGTTTCTCTTTTGTAAGATGAATGAATAAGCTTGTTATCAGC
ATTTTTCATGTGCGAATTCTATTTTGATTCCACTTTtaaaaaccattaaa
atttctttgggatttgaaataaatatatctACTCTTGTGTATATAATAAG
CTAAATTGGTCATTTTCTGAACAGTATTGGGCTGTTCTGTTTAATATCCA
TATGCTACCCTTCAGAATAACTTTAAGCCCTCGCGAAATCAAAATTATTA
TTTCGCCCCTGGAAATAGATATAGAAAGACCAACCAACCCCTTTGAAAAA
ATACANcatcatgacatttagtgacgtggtggtactgcaaaaaagctcaa
aaatgattttagtaccatgtgtactaaaataccaaaaagggtggtcccct
taaaggaatttttgaaaaatcttagtattttgttttaaaatcagccaaaa
tggagcatttttttaacaattttggaaaaaatttgattttttttttcagg
aattttcgaaaaaatcttcagaatttttccaattttaaaaatatttttat
gtacagttcagcaA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043047	XLOC_043047	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_493	supercontig	scaffold_493:190178..197291 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.9289	13.484	19.6735	27.0957	5.02591	4.25274	5.78958	7.14086	10.6365	10.5869	8.69172	11.4842	10.6479	6.65171	14.7093	8.94255	12.4276	10.3698	8.37874	10.3985	10.3172	9.47471	11.871	11.6243	0.272932	0.230907	7.01977	6.47961	4.80989	6.26927

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069068 vs. Swiss-Prot (Human)

BLAST of TCONS_00069068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069068 (transcript) - C. hemisphaerica