XLOC_041369 (gene) - C. hemisphaerica

Overview
NameXLOC_041369
Unique NameXLOC_041369
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_45:241649..250105+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041369 ID=XLOC_041369|Name=XLOC_041369|organism=Clytia hemisphaerica|type=gene|length=8457bp|location=Sequence derived from alignment at scaffold_45:241649..250105+ (Clytia hemisphaerica)
AGTGTaatgaaataataaaacaaataatacaTTGAATTTCAATACAAATG
GTATGCTTGGCGTATTATCGAAGGTATACATTTCTTATCGTTTTCGTCac
cttttggaagaaaaaacttctcaaagtgattttgttttttgagaGAAATG
AAAGTTTAAACCCTTAATTTTCAGATACCACAAAGATTACTGAGTGTGGA
GACATCTTTTCATATTTCAAGCCTTATTCGTGAAGTTACAAAAGGTAGGA
TAATGAAGAATCTGTATATTTTAACAGTTGCTGCACGGAGTTCCTGCCAG
CATGTCCTGCATAAAACAAGTTGGGATTTTCGACTGTATTTTTGATTGTA
TAAATCTTTTAGGTgactttccaaaaatgaattTGCGTTTGTCTTTACAT
TTTTAGCAGAAAATTACTGATTCTTGCACATACAAATCCTTACTTCTTGT
TTACTTGCCGTTaacttttctaatttttgaaGGATaaaacttaagggctc
tgaccatagtgaatttttcataatttctgtgtttaaaatgtgttttctga
ctgatgtaaccaacaaaactatggcatgttatacattttctgttagacaa
actattcctgaatcNNNctcgaatgtgacggagcccgattttcgaaaaaa
aaaattttccggccggtagaaccggaaatgtcccgaaaaaagcggttttt
tgagattttctccagattttatcattagttttttgcgattttctgcacct
agatgcacattagtactgccgaaaaggtgtcgaaaaccgtttgccgataa
aaatttttttccggtctgtagaaccggaaatgtgccggaaatcgtcgttt
tttcacatttccgtcacattttttcaacttatttaatNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNttttgcacaatgatgtaaaatggcaatgcccaaaatgtgacagagc
ccaattttcgaaaaagaaatttttccggccgctagaaccggaaatgtccc
gaaaaaattggttttttgagattttctcgagatgaatgattgattaaagt
gtctatattatttttctttcaccgttaaacatcgatgcgtttcttaattg
ctttctccgttccaatagatatataaatcgaaatttaaaattatacatta
cttccattaaattctaattattcgttttataaataggtaggtatTACTTG
tttatctggattttgcttaaaaaaacagtcataacttttgacacatcttt
ttagaaaaattttccgcaaaatttaaaatagttcaattctttgcggacaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaag
gtgatgcaacatattattaacgtctttttaaagttcataacgtcattttt
gcaattaagttcttaattactcttaaggggtttgattaaaaagcaatcta
taaaggcaattctttgttaaaagtgttaaagaatctaaaacataactttt
atgttcagatactaaaatcaatttgctgactatggtcagagcccttaaca
aAGTATTCCAACCTTCGTCTAGTCTCTTCTTCTCTTCTTTTTCATCCTTA
TATTCTCTTTTTGCCGCCATGCGAGATGCTATCTTCTTTTTTGGATCTAC
CCCGGTgaaggtcctatgaattaaccgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgtggctcattcaatttttccgaTATTTAGCACAA
AGAATCAAAATGGTAAAGCCTCGAATGTGACNgctaattttgattgttca
attgttttacaagtttgttttggacacgtgattttaattgttctctttaa
tgacacgtgattcgcgcaatgtttactttttactgctttaatgtcccttt
aatgtTCCcatttttcgatgtttttgcTCCAAATTTAACGTGCTTcgact
tttgattttttttacacttGAAAATGATAATCAAATTGTGGAAATAAATT
GACAAATTTTTATTCTTTGGATACTCATCTCattatattgaattttttcc
cttttcccTTGCAACACTGTCCAGATTATACGGAAAATGacaacattttt
ttctgtttctttaTACTCAGAAAAATTTGAAGTAAAGTTTGTGAGAAGCT
CTGGTGCTGGTGGTCAAAATGTCAACAAAGGTATTCTTGAAAGCTGTACA
TTACGAAAAAATTCCTTCACAGTGATCGAGCTTTATTGTAGCTGTTCttc
ctttctatttttccttttaacCTTCCTTTTCAAGAGCAAAGTGAAGATTc
cttgtattttttaatttgtacATCTTTGCTGACAgacgaaaattttaatt
ttaatgatttcgtatattttgatatgaaatcagttataatatataaaaat
tgGTTATGCCGGATTATAAAGCTGTCAAGATTTCAATGTGCTTCGTTTGT
ACTTCCCTTCTTAACAGTCAACACAAAGACAGAACTACGTCTTGATTTGT
CAACTGCAAACTGGATTCCAACAGAGGTGCTAATCAAACTAAAAGAACAG
GTATCGCGTTTTGTAGAATCGTTTTGTCTTGATTTCCCTCTGCATAGACG
TGTTTTTTCTTGGCAGGTTATGTCTTAAAGTAAACAAGGatcatttatag
atatgatCATGTTTTCTAAAAGAAATAGCATGTcactatatttttgaaaa
acagaaaaaaaaacgtcATTCGAATCGAATTATATCACTACAACTACTGc
ctttttgtctcagctgcagaTTGTTTTAAGGCAGACTTCACTTTTACTTT
TACCTGTTTgccttcaaaaacaaagaatataTCAAAATGCAAGGACTATC
CCTAACAcacaacgtttatctaacgttcacaacgtccatataacgttaga
tgaacgttgaaacaacgttgtgtggaCAGATTTTGGCTAAATAACCTGAA
GAATTTTTATAGATCAGCAGATAGAACAAATAGTAGTGTAAAATTAAACT
ACATAAAGTGTGACATTTCCGATCGTGTGTAGTTCAAAtctcattgattt
tttttctgtagCAAAACTTTTCTCTCTAAGACATCAATTTCGCTCCAAAT
CTCCATCATCTATTGAAGTTTAACTTTAGTTGAGATTATGATGTACTCAC
GTTCTTGATAGATAGACGCTGAAgaaatgttttctttctttgtttcaggA
AAATAATTCAGTGAATAAAGAAGGAGAATTGATCGTGGTATCAGAAAAGA
CTCGCTCTCAGCATCAGAATCTACAAGATGCATTGAACAAAGTGAAAGAA
ATGCTTCGGAATGCCTCTCACCAACCTAAAGAAACATCCGAAGAGACGAA
AGGAAAAGTCGAACAGTTCAAACGACGAGAGAAAGAGAAGCGCTTGGAAC
TGAAGAAAAGGAAATCCCTCAAAAAGTTTGATCGCAAAAACATTGACTAA
CTTCAATATAACTGGAACAAAAGGTTATGTGATTATCATAACTCATGTCT
AATTTAATTTATGTTTATCTATTTTCCCttgatttttgttatcaaaaata
tgaaagcTGTTAGATATTCCAGCCATAATCTCTGATTGAAAATAACGTAT
ATAATTCttttaagaattttctttgTTAAAACAAAGGATAAAAttaaaca
caaaacaaaaaccTTTTCGAGACTCAGACCTAAAAATTTATCTTTCTTGT
TATTTGAATACTGTATGAAGGATGAAGAGTGTGTTGTTTAGAATAATTTT
ATCTAGTTTTCTCACTAAAGTTTTTGCTTTACTCGTTCTCCATGATGATA
GCATAAACATTCGGAATGGAAGTTACAAAACCTTTTCATTTGGAAAAGCT
TCCATAAATAAACTAGTAGATTTTGTTGATCAAAAGGAAGAAGACACTAG
AACCATCTCTTTATTAGATCATTTCAGCAATTCCATGATAACCGAGCTTC
TTGGTATCAAATTGAAAACTTTAAACCCTAACCAAACCTTGGTAAGTTTA
AAAAGTTTATGAAAATGTTTgtaatgaattttcaaaatattgaatatctt
ttgaaaCATTTCCTTTCTTCTTTAGGTTGGAGATGGGGATTTCTCAAGAC
TGAACTTGTATTTACCATACGATACTTTATCATTGATTGATGAAATAAGA
AGAGAGAGAGCTTCGCGTTTGTGTATCATCACTTACCATCCATGTCAATT
TATTTCATTACAACAATTGATGAGAACCTTAAAAGAAATGGGCGTGGAGG
CGGTGTGTAGAGTATACGACCCTTTCAACATACATGGAATGTCTTTGACA
ATGCTACTTAAACATGCTGATGGATGGGATTACACCCGGTTTCTTCTCCT
ACTCTCACCCTTTGATCGAGATTTATTCAAAGATTTCCTCAACAACACTG
GCTCTCGTGAGCCTTACAGAATATTTACACCGGATGTCGCCGCCCTTAAT
CGAAATTCATTTTACTTGGAAAATAATATGATCCAAGATATTGGAAATGC
GCCCAACGACAGTGAAGCAAACTTGTAAGTTATTCAATTAACATAGAAAT
CAGATCATTAAACTATTTAGGGTGTCCTAAAAAGAAGTAATGTGTCAGAC
CACTTCTCCTACCATTATGTTAcatatcatttttttcaaacttaagaAAG
AACAACTTTATCTAATTGATTTAAATAATGATtttatacttttcttttga
ctaaAAGTTACAGTCATCTAAAAAGGTCCATAAATGGCGATAAATTGATA
AAGATGATGTACCATTTTAAAGagtttataacttttgatacagtAGAGAT
ATGAAAAATCGGAATATATATTTGTAATTATCGAGGTTTAAAGTTTCAGA
AAAGTACACAATGACATAATTTTATCTTCACCTTTTCCCTCTTCATTTCT
CATTTTCAAGCTTACATCATTCTGCTTAAAGTGTTCTTTCTAACGAGGTA
TTAATTTAAACGATACGGACTGACtgccaatttttttggaatGGGCTTTA
TATTCGTTGTGATATTTCGCATGGTTTAAGAAATACTATCAAAGTAAAAT
ACAATCTAAAACATAATCAAATTTGTTTTCTCTTTGTATTTTAGGTCTTT
CCTTTCGGCTGAATGNCAATCTAAAACATAATCAAATTTGTTTTCTCTTT
GTATTTTAGATCTTTCCTTTCGGCTGAAtggagaaacaatgaaaatatct
CATTTCGATATGAAGCATTTCCACAGAAGTGGAAAAGGAAGATCATTCGA
GTAACTTCTTCGATTTTCCCTCCCTATAACAATGTTCTTAAAGAGAAGCC
GACGAAATTCGGACAATGTATAAATGCAGGGCACCTTTGTCGCGTCCCCA
TCAAAAGAGGGAATATAACTGAAGGATGGAGAGAGTGTTGTTGTGGGGGT
ATTGCTGTTTCTTTATTCGATCTGATCACCAAACAGTTGAACATTAAATA
CGACCTGTATTTAGTGGAGGACAATAAATTTGGTGGTAAGAATGTAACCG
GTGGATGGAATGGAATGATCGGTGAATTGATCAACAATAAAGCAGATATT
GCCATCAATGGCTTCAATCCTACACGTGAACGATTGAAAGAAGTTTCCTT
CACTTCTGCATACCAACACGATTATCTCTCCTTCGTCAAACGGAAATTAT
CTTTCGAAGAAATAGACTTTGTGAATTGGGAATTCGTTCGAACAATGGAA
TCAGACCTTGCTTTGTGGATTCTTTTCTCCACTGTATTCTCGGCAACGTT
CATTGTATTCTCCGAAAACATTGGCTATCTTTTGAGaagcaagaaatatt
tttccacgAGAGAGGTGATGACTTATATTTTTGGACTGGCGTTTCAACGA
GACATGGGTGGTCGAAATCCACTGCGTTGGGGAGGCAGGGTTGTGGCGCT
AAGCTATGCAGCTTCTATGACTGTTATCATGACAACTTATACTGCCCACC
TCACTGCAAAGAACATTCAAATTGTGCCCAAAAATACCTTCCTTGGATTG
AAGGACCAAAGggtaaaaaattaatgattatTTGAATATGTTTTATCTAC
CCACATTTTTACGCCATAGAATTATTATCAGATAGAATGAAttcatgctt
ttttcctcaaaatgaagcgtgtctgtaaggggtcccttagttgcaatggg
aattcaattgcacgtgtgcaatgataatgtcatttctttgttcttatcgt
attttaattgcatattttctcatgcttggattcttttgaattctcaaaaa
attatgcacataatttgattattttcaactggaAATTTCGGGCACTTCTG
TCCCCTCAATGCAAATAAGaattacatatttgaaatctgctcattttata
gattcaccagtgttgaaaactatttgaaaacgcactcttaagaaaagaaa
tttgggtatcaagttttcacctaaattagtTACTCTTTCCGTATagacta
aaattgattttttaattttaggagttaaaatcgatggaatcactaaattt
cagctcctaaaattccagattttaagctaaaatagatttgtaaatatcaa
tcgttttccaaaactaaaaatttcgttactgagaaaaaataccgtgcaaa
cccttataaaaagatttctatccacgcatcagattttgagaaactgtttt
tacgaccaataGTCACTTTAACAAAGGGAATCTGAATAGATGATGAAGTA
GCCAAAGTGAGATAttattctatctgataacaAACAGTTCACTGTTTACA
CTGTAACATTTTTGGAGAAACACGATGGCAGGTTATGGTTGAAATGAAAG
CCTTGTTTCCGTTTTCGAAATAAATTTTATCAATCAATTATCGTCGACAG
TTTCATATGAAAAATTAGCTTAAAATATCGCCCCCCTCCCCTTATAAATA
ACTCTATTGCTAAGATTAGCTTTCTGAAAGATGGCTGTTTATTTTATTGA
GAAGGAAAAATTGTGATAAATCATAGATTTGTATTAATTTTACAGTTGTT
AAAGCCGACGGACGATTTCAAGATTGCTCTGATGAGTGCAACATCCTTTG
AAGCTATGTTTCGAGATGGTTCAGAAGATTATAAACGTTTTTGGGCCTTC
TCCAAGAAATATGCTGTCTCCTCGAACAGTGAAGGAGTAGAAAAAGTGTA
CACTGGGTGAGATACCGTCATATttccaatatattatgacctctTCAAAG
TTTAAATAGTTTCATTTGACAGGCTTTACACCAAGGTGGAATATCTAGCA
TTAAGAGCTATGAGCTTGGGGACTTCTACAATTATTTATCTCTTTAGAGA
ATTGGATGCGTTTATCATTGAAGCTATCGCAAGCAGAACGATCACCTCGC
ATAGCAAATATTGTGAAAATCTGGAAGTTTTTGTAGAAAACAAAACTCAA
ATGGAAGTCAGCTTTCCTTATCGAAAAGATTTCCCTCTTGGTGAAGAAAT
ATCTCGTCAAATTCTTAAAGTAAGAGAAGACTATAAGATCAAAGACATAA
TTGAAAGATGGGTTTATATTCCCCAATGCACGTCATCGATGAAGAATTTC
ACAAAGTTTGATGTCAATTATTTCGGTGGAATTATTTTCATCTGTGCAAT
CCTCCTTTTGGTTTCGATCTTTCTCATCTTGGCGGAAAATTTTCATACAC
ATGTCAAGATGCGCAGAAGAACTCGTTGTCGACAAAGAAGCTCTACAAGT
ATCACTAACATTTCATTTTAAAGGGAAAGGAATTCCATTTCTTTTAAGTA
TCCTGGTTAAAGATCATTTGGATGGAAAATCTAGATGAAAGGCTTTTGAG
TGAGAACCTTTAAGACTTGAGAAAACAAACTACTGAAACACTTTCCTTCC
CAGGATCAGATCATATTATCTGACATACTAAGTTTTAAGGAGTAAGATAA
GTATATTTATAATTCATAACAAGATCAAGCAGGCCCTGTATCAATGGAGG
TGATGCTTTTTCTTGGtgctttttattgaaaaatgatGGTCTGATCTAAA
GCGAAGTGGGTTCAAATCGGGCAATGTGAAGTTAGCTAGATGAGAAATTC
ATTCCAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066069TCONS_00066069Clytia hemisphaericatranscript
TCONS_00066070TCONS_00066070Clytia hemisphaericatranscript
TCONS_00066071TCONS_00066071Clytia hemisphaericatranscript
TCONS_00066072TCONS_00066072Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00066069-proteinTCONS_00066069-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:241649..250105 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.7	6.5	4.17	4.21	7.82	6.25	10.71	11.37	9.93	10.21	10.09	7.91	7.06	6.99	5.21	8.46	10.56	12.65	7.97	9.71	7.27	5.34	11.04	7.39	11.58	8.22	5.28	3.98	5.76	7.36