TCONS_00066071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066071
Unique NameTCONS_00066071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066071 ID=TCONS_00066071|Name=TCONS_00066071|organism=Clytia hemisphaerica|type=transcript|length=2489bp
AGAGTGTGTTGTTTAGAATAATTTTATCTAGTTTTCTCACTAAAGTTTTT
GCTTTACTCGTTCTCCATGATGATAGCATAAACATTCGGAATGGAAGTTA
CAAAACCTTTTCATTTGGAAAAGCTTCCATAAATAAACTAGTAGATTTTG
TTGATCAAAAGGAAGAAGACACTAGAACCATCTCTTTATTAGATCATTTC
AGCAATTCCATGATAACCGAGCTTCTTGGTATCAAATTGAAAACTTTAAA
CCCTAACCAAACCTTGGTTGGAGATGGGGATTTCTCAAGACTGAACTTGT
ATTTACCATACGATACTTTATCATTGATTGATGAAATAAGAAGAGAGAGA
GCTTCGCGTTTGTGTATCATCACTTACCATCCATGTCAATTTATTTCATT
ACAACAATTGATGAGAACCTTAAAAGAAATGGGCGTGGAGGCGGTGTGTA
GAGTATACGACCCTTTCAACATACATGGAATGTCTTTGACAATGCTACTT
AAACATGCTGATGGATGGGATTACACCCGGTTTCTTCTCCTACTCTCACC
CTTTGATCGAGATTTATTCAAAGATTTCCTCAACAACACTGGCTCTCGTG
AGCCTTACAGAATATTTACACCGGATGTCGCCGCCCTTAATCGAAATTCA
TTTTACTTGGAAAATAATATGATCCAAGATATTGGAAATGCGCCCAACGA
CAGTGAAGCAAACTTATCTTTCCTTTCGGCTGAAtggagaaacaatgaaa
atatctCATTTCGATATGAAGCATTTCCACAGAAGTGGAAAAGGAAGATC
ATTCGAGTAACTTCTTCGATTTTCCCTCCCTATAACAATGTTCTTAAAGA
GAAGCCGACGAAATTCGGACAATGTATAAATGCAGGGCACCTTTGTCGCG
TCCCCATCAAAAGAGGGAATATAACTGAAGGATGGAGAGAGTGTTGTTGT
GGGGGTATTGCTGTTTCTTTATTCGATCTGATCACCAAACAGTTGAACAT
TAAATACGACCTGTATTTAGTGGAGGACAATAAATTTGGTGGTAAGAATG
TAACCGGTGGATGGAATGGAATGATCGGTGAATTGATCAACAATAAAGCA
GATATTGCCATCAATGGCTTCAATCCTACACGTGAACGATTGAAAGAAGT
TTCCTTCACTTCTGCATACCAACACGATTATCTCTCCTTCGTCAAACGGA
AATTATCTTTCGAAGAAATAGACTTTGTGAATTGGGAATTCGTTCGAACA
ATGGAATCAGACCTTGCTTTGTGGATTCTTTTCTCCACTGTATTCTCGGC
AACGTTCATTGTATTCTCCGAAAACATTGGCTATCTTTTGAGaagcaaga
aatatttttccacgAGAGAGGTGATGACTTATATTTTTGGACTGGCGTTT
CAACGAGACATGGGTGGTCGAAATCCACTGCGTTGGGGAGGCAGGGTTGT
GGCGCTAAGCTATGCAGCTTCTATGACTGTTATCATGACAACTTATACTG
CCCACCTCACTGCAAAGAACATTCAAATTGTGCCCAAAAATACCTTCCTT
GGATTGAAGGACCAAAGgTTGTTAAAGCCGACGGACGATTTCAAGATTGC
TCTGATGAGTGCAACATCCTTTGAAGCTATGTTTCGAGATGGTTCAGAAG
ATTATAAACGTTTTTGGGCCTTCTCCAAGAAATATGCTGTCTCCTCGAAC
AGTGAAGGAGTAGAAAAAGTGTACACTGGAGAATTGGATGCGTTTATCAT
TGAAGCTATCGCAAGCAGAACGATCACCTCGCATAGCAAATATTGTGAAA
ATCTGGAAGTTTTTGTAGAAAACAAAACTCAAATGGAAGTCAGCTTTCCT
TATCGAAAAGATTTCCCTCTTGGTGAAGAAATATCTCGTCAAATTCTTAA
AGTAAGAGAAGACTATAAGATCAAAGACATAATTGAAAGATGGGTTTATA
TTCCCCAATGCACGTCATCGATGAAGAATTTCACAAAGTTTGATGTCAAT
TATTTCGGTGGAATTATTTTCATCTGTGCAATCCTCCTTTTGGTTTCGAT
CTTTCTCATCTTGGCGGAAAATTTTCATACACATGTCAAGATGCGCAGAA
GAACTCGTTGTCGACAAAGAAGCTCTACAAGTATCACTAACATTTCATTT
TAAAGGGAAAGGAATTCCATTTCTTTTAAGTATCCTGGTTAAAGATCATT
TGGATGGAAAATCTAGATGAAAGGCTTTTGAGTGAGAACCTTTAAGACTT
GAGAAAACAAACTACTGAAACACTTTCCTTCCCAGGATCAGATCATATTA
TCTGACATACTAAGTTTTAAGGAGTAAGATAAGTATATTTATAATTCATA
ACAAGATCAAGCAGGCCCTGTATCAATGGAGGTGATGCTTTTTCTTGGtg
ctttttattgaaaaatgatGGTCTGATCTAAAGCGAAGTGGGTTCAAATC
GGGCAATGTGAAGTTAGCTAGATGAGAAATTCATTCCAG
Run BLAST on NCBI

transcript from alignment at scaffold_45:245774..250105+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066071 ID=TCONS_00066071|Name=TCONS_00066071|organism=Clytia hemisphaerica|type=transcript|length=4332bp|location=Sequence derived from alignment at scaffold_45:245774..250105+ (Clytia hemisphaerica)
AGAGTGTGTTGTTTAGAATAATTTTATCTAGTTTTCTCACTAAAGTTTTT
GCTTTACTCGTTCTCCATGATGATAGCATAAACATTCGGAATGGAAGTTA
CAAAACCTTTTCATTTGGAAAAGCTTCCATAAATAAACTAGTAGATTTTG
TTGATCAAAAGGAAGAAGACACTAGAACCATCTCTTTATTAGATCATTTC
AGCAATTCCATGATAACCGAGCTTCTTGGTATCAAATTGAAAACTTTAAA
CCCTAACCAAACCTTGGTAAGTTTAAAAAGTTTATGAAAATGTTTgtaat
gaattttcaaaatattgaatatcttttgaaaCATTTCCTTTCTTCTTTAG
GTTGGAGATGGGGATTTCTCAAGACTGAACTTGTATTTACCATACGATAC
TTTATCATTGATTGATGAAATAAGAAGAGAGAGAGCTTCGCGTTTGTGTA
TCATCACTTACCATCCATGTCAATTTATTTCATTACAACAATTGATGAGA
ACCTTAAAAGAAATGGGCGTGGAGGCGGTGTGTAGAGTATACGACCCTTT
CAACATACATGGAATGTCTTTGACAATGCTACTTAAACATGCTGATGGAT
GGGATTACACCCGGTTTCTTCTCCTACTCTCACCCTTTGATCGAGATTTA
TTCAAAGATTTCCTCAACAACACTGGCTCTCGTGAGCCTTACAGAATATT
TACACCGGATGTCGCCGCCCTTAATCGAAATTCATTTTACTTGGAAAATA
ATATGATCCAAGATATTGGAAATGCGCCCAACGACAGTGAAGCAAACTTG
TAAGTTATTCAATTAACATAGAAATCAGATCATTAAACTATTTAGGGTGT
CCTAAAAAGAAGTAATGTGTCAGACCACTTCTCCTACCATTATGTTAcat
atcatttttttcaaacttaagaAAGAACAACTTTATCTAATTGATTTAAA
TAATGATtttatacttttcttttgactaaAAGTTACAGTCATCTAAAAAG
GTCCATAAATGGCGATAAATTGATAAAGATGATGTACCATTTTAAAGagt
ttataacttttgatacagtAGAGATATGAAAAATCGGAATATATATTTGT
AATTATCGAGGTTTAAAGTTTCAGAAAAGTACACAATGACATAATTTTAT
CTTCACCTTTTCCCTCTTCATTTCTCATTTTCAAGCTTACATCATTCTGC
TTAAAGTGTTCTTTCTAACGAGGTATTAATTTAAACGATACGGACTGACt
gccaatttttttggaatGGGCTTTATATTCGTTGTGATATTTCGCATGGT
TTAAGAAATACTATCAAAGTAAAATACAATCTAAAACATAATCAAATTTG
TTTTCTCTTTGTATTTTAGGTCTTTCCTTTCGGCTGAATGNCAATCTAAA
ACATAATCAAATTTGTTTTCTCTTTGTATTTTAGATCTTTCCTTTCGGCT
GAAtggagaaacaatgaaaatatctCATTTCGATATGAAGCATTTCCACA
GAAGTGGAAAAGGAAGATCATTCGAGTAACTTCTTCGATTTTCCCTCCCT
ATAACAATGTTCTTAAAGAGAAGCCGACGAAATTCGGACAATGTATAAAT
GCAGGGCACCTTTGTCGCGTCCCCATCAAAAGAGGGAATATAACTGAAGG
ATGGAGAGAGTGTTGTTGTGGGGGTATTGCTGTTTCTTTATTCGATCTGA
TCACCAAACAGTTGAACATTAAATACGACCTGTATTTAGTGGAGGACAAT
AAATTTGGTGGTAAGAATGTAACCGGTGGATGGAATGGAATGATCGGTGA
ATTGATCAACAATAAAGCAGATATTGCCATCAATGGCTTCAATCCTACAC
GTGAACGATTGAAAGAAGTTTCCTTCACTTCTGCATACCAACACGATTAT
CTCTCCTTCGTCAAACGGAAATTATCTTTCGAAGAAATAGACTTTGTGAA
TTGGGAATTCGTTCGAACAATGGAATCAGACCTTGCTTTGTGGATTCTTT
TCTCCACTGTATTCTCGGCAACGTTCATTGTATTCTCCGAAAACATTGGC
TATCTTTTGAGaagcaagaaatatttttccacgAGAGAGGTGATGACTTA
TATTTTTGGACTGGCGTTTCAACGAGACATGGGTGGTCGAAATCCACTGC
GTTGGGGAGGCAGGGTTGTGGCGCTAAGCTATGCAGCTTCTATGACTGTT
ATCATGACAACTTATACTGCCCACCTCACTGCAAAGAACATTCAAATTGT
GCCCAAAAATACCTTCCTTGGATTGAAGGACCAAAGggtaaaaaattaat
gattatTTGAATATGTTTTATCTACCCACATTTTTACGCCATAGAATTAT
TATCAGATAGAATGAAttcatgcttttttcctcaaaatgaagcgtgtctg
taaggggtcccttagttgcaatgggaattcaattgcacgtgtgcaatgat
aatgtcatttctttgttcttatcgtattttaattgcatattttctcatgc
ttggattcttttgaattctcaaaaaattatgcacataatttgattatttt
caactggaAATTTCGGGCACTTCTGTCCCCTCAATGCAAATAAGaattac
atatttgaaatctgctcattttatagattcaccagtgttgaaaactattt
gaaaacgcactcttaagaaaagaaatttgggtatcaagttttcacctaaa
ttagtTACTCTTTCCGTATagactaaaattgattttttaattttaggagt
taaaatcgatggaatcactaaatttcagctcctaaaattccagattttaa
gctaaaatagatttgtaaatatcaatcgttttccaaaactaaaaatttcg
ttactgagaaaaaataccgtgcaaacccttataaaaagatttctatccac
gcatcagattttgagaaactgtttttacgaccaataGTCACTTTAACAAA
GGGAATCTGAATAGATGATGAAGTAGCCAAAGTGAGATAttattctatct
gataacaAACAGTTCACTGTTTACACTGTAACATTTTTGGAGAAACACGA
TGGCAGGTTATGGTTGAAATGAAAGCCTTGTTTCCGTTTTCGAAATAAAT
TTTATCAATCAATTATCGTCGACAGTTTCATATGAAAAATTAGCTTAAAA
TATCGCCCCCCTCCCCTTATAAATAACTCTATTGCTAAGATTAGCTTTCT
GAAAGATGGCTGTTTATTTTATTGAGAAGGAAAAATTGTGATAAATCATA
GATTTGTATTAATTTTACAGTTGTTAAAGCCGACGGACGATTTCAAGATT
GCTCTGATGAGTGCAACATCCTTTGAAGCTATGTTTCGAGATGGTTCAGA
AGATTATAAACGTTTTTGGGCCTTCTCCAAGAAATATGCTGTCTCCTCGA
ACAGTGAAGGAGTAGAAAAAGTGTACACTGGGTGAGATACCGTCATATtt
ccaatatattatgacctctTCAAAGTTTAAATAGTTTCATTTGACAGGCT
TTACACCAAGGTGGAATATCTAGCATTAAGAGCTATGAGCTTGGGGACTT
CTACAATTATTTATCTCTTTAGAGAATTGGATGCGTTTATCATTGAAGCT
ATCGCAAGCAGAACGATCACCTCGCATAGCAAATATTGTGAAAATCTGGA
AGTTTTTGTAGAAAACAAAACTCAAATGGAAGTCAGCTTTCCTTATCGAA
AAGATTTCCCTCTTGGTGAAGAAATATCTCGTCAAATTCTTAAAGTAAGA
GAAGACTATAAGATCAAAGACATAATTGAAAGATGGGTTTATATTCCCCA
ATGCACGTCATCGATGAAGAATTTCACAAAGTTTGATGTCAATTATTTCG
GTGGAATTATTTTCATCTGTGCAATCCTCCTTTTGGTTTCGATCTTTCTC
ATCTTGGCGGAAAATTTTCATACACATGTCAAGATGCGCAGAAGAACTCG
TTGTCGACAAAGAAGCTCTACAAGTATCACTAACATTTCATTTTAAAGGG
AAAGGAATTCCATTTCTTTTAAGTATCCTGGTTAAAGATCATTTGGATGG
AAAATCTAGATGAAAGGCTTTTGAGTGAGAACCTTTAAGACTTGAGAAAA
CAAACTACTGAAACACTTTCCTTCCCAGGATCAGATCATATTATCTGACA
TACTAAGTTTTAAGGAGTAAGATAAGTATATTTATAATTCATAACAAGAT
CAAGCAGGCCCTGTATCAATGGAGGTGATGCTTTTTCTTGGtgcttttta
ttgaaaaatgatGGTCTGATCTAAAGCGAAGTGGGTTCAAATCGGGCAAT
GTGAAGTTAGCTAGATGAGAAATTCATTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041369XLOC_041369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066071-exon-scaffold_45-1491911889:245774..246039TCONS_00066071-exon-scaffold_45-1491911889:245774..246039Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1510915933:245774..246039TCONS_00066071-exon-scaffold_45-1510915933:245774..246039Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1575043694:245774..246039TCONS_00066071-exon-scaffold_45-1575043694:245774..246039Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1491911889:246124..246572TCONS_00066071-exon-scaffold_45-1491911889:246124..246572Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1510915933:246124..246572TCONS_00066071-exon-scaffold_45-1510915933:246124..246572Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1575043694:246124..246572TCONS_00066071-exon-scaffold_45-1575043694:246124..246572Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1491911889:247208..248060TCONS_00066071-exon-scaffold_45-1491911889:247208..248060Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1510915933:247208..248060TCONS_00066071-exon-scaffold_45-1510915933:247208..248060Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1575043694:247208..248060TCONS_00066071-exon-scaffold_45-1575043694:247208..248060Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1491911889:249044..249204TCONS_00066071-exon-scaffold_45-1491911889:249044..249204Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1510915933:249044..249204TCONS_00066071-exon-scaffold_45-1510915933:249044..249204Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1575043694:249044..249204TCONS_00066071-exon-scaffold_45-1575043694:249044..249204Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1491911889:249346..250105TCONS_00066071-exon-scaffold_45-1491911889:249346..250105Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1510915933:249346..250105TCONS_00066071-exon-scaffold_45-1510915933:249346..250105Clytia hemisphaericaexon
TCONS_00066071-exon-scaffold_45-1575043694:249346..250105TCONS_00066071-exon-scaffold_45-1575043694:249346..250105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:245774..250105 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.158548	0.242306	0	0	0.325599	0.46281	0	0.0941357	0	0.0583979	0.268327	0.429001	0.120223	0	0.284997	0.211439	3.57248	2.66877	0.28734	0.365738	0.721004	0.186121	0.573211	0.552253	0.118165	0	0	0
Blast
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BLAST of TCONS_00066071 vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.316e-28
Identity = 93/390 (23.85%), Postives = 169/390 (43.33%), Query Frame = 3 
Query:  945 CCGGIAVSLFDLITKQLNIKYDLYLVEDNKFGGKNVTGG-----WNGMIGELINNKADIAINGFNPTRERLKEVSFTSAYQHDYLS-FVKRKLSFEEIDFVNWEFVRTMESDLALWILFSTVFSATFIVFSENIGYLLRSK--------KYFSTREVMTYIFGLAFQRDMGGRNPLRWGGRVVALSYAASMTVIMTTYTAHLTAKNIQIVPKNTFLGLKDQRLLKPTDDFKIALMSATSFEAMFRDGSEDYKRFWAFSKKYAVSSNSEGVEKVYTGELDAFIIE-AIASRTITSHSKYCENLEVFVENKTQMEVSFPYRKDFPLGEEISRQILKVREDYKIKDIIERWVYIPQCTSSMKNFTKFDVNYFGGIIFICAILLLVSIFLILAE 2069
            CC G  + L   + + +N  Y+++LV D KFG +          WNGM+GEL++ +AD+ +       ER + + F+  +++  L+  VK+++    +D     F++  +S L L +  S    A  +   +      R K           +    M + +G+     +G   P  +  R++ + +A    +I+ +YTA+L A  +   P+    G+ D RL  P+D F  A +  +S +  FR   E     +   +K+   S +E ++ V   +L AFI + A+     +         E+F  +          RKD P  + +S  ILK  E+  ++D+ + WV   +C S              G+  + A  ++  IFLI  E
Sbjct:  454 CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLD----SFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVE-LSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSG----FGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIE 834
The following BLAST results are available for this feature:
BLAST of TCONS_00066071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ12.316e-2823.85Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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