TCONS_00066070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066070
Unique NameTCONS_00066070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1030

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066070 ID=TCONS_00066070|Name=TCONS_00066070|organism=Clytia hemisphaerica|type=transcript|length=1030bp
GTGTaatgaaataataaaacaaataatacaTTGAATTTCAATACAAATGG
TATGCTTGGCGTATTATCGAAGATACCACAAAGATTACTGAGTGTGGAGA
CATCTTTTCATATTTCAAGCCTTATTCGTGAAGTTACAAAAGAAAAATTT
GAAGTAAAGTTTGTGAGAAGCTCTGGTGCTGGTGGTCAAAATGTCAACAA
AGTCAACACAAAGACAGAACTACGTCTTGATTTGTCAACTGCAAACTGGA
TTCCAACAGAGGTGCTAATCAAACTAAAAGAACAGgAAAATAATTCAGTG
AATAAAGAAGGAGAATTGATCGTGGTATCAGAAAAGACTCGCTCTCAGCA
TCAGAATCTACAAGATGCATTGAACAAAGTGAAAGAAATGCTTCGGAATG
CCTCTCACCAACCTAAAGAAACATCCGAAGAGACGAAAGGAAAAGTCGAA
CAGTTCAAACGACGAGAGAAAGAGAAGCGCTTGGAACTGAAGAAAAGGAA
ATCCCTCAAAAAGTTTGATCGCAAAAACATTGACTAACTTCAATATAACT
GGAACAAAAGGTTGGAGATGGGGATTTCTCAAGACTGAACTTGTATTTAC
CATACGATACTTTATCATTGATTGATGAAATAAGAAGAGAGAGAGCTTCG
CGTTTGTGTATCATCACTTACCATCCATGTCAATTTATTTCATTACAACA
ATTGATGAGAACCTTAAAAGAAATGGGCGTGGAGGCGGTGTGTAGAGTAT
ACGACCCTTTCAACATACATGGAATGTCTTTGACAATGCTACTTAAACAT
GCTGATGGATGGGATTACACCCGGTTTCTTCTCCTACTCTCACCCTTTGA
TCGAGATTTATTCAAAGATTTCCTCAACAACACTGGCTCTCGTGAGCCTT
ACAGAATATTTACACCGGATGTCGCCGCCCTTAATCGAAATTCATTTTAC
TTGGAAAATAATATGATCCAAGATATTGGAAATGCGCCCAACGACAGTGA
AGCAAACTTGTCTTTCCTTTCGGCTGAATG
Run BLAST on NCBI

transcript from alignment at scaffold_45:241650..247163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066070 ID=TCONS_00066070|Name=TCONS_00066070|organism=Clytia hemisphaerica|type=transcript|length=5514bp|location=Sequence derived from alignment at scaffold_45:241650..247163+ (Clytia hemisphaerica)
GTGTaatgaaataataaaacaaataatacaTTGAATTTCAATACAAATGG
TATGCTTGGCGTATTATCGAAGGTATACATTTCTTATCGTTTTCGTCacc
ttttggaagaaaaaacttctcaaagtgattttgttttttgagaGAAATGA
AAGTTTAAACCCTTAATTTTCAGATACCACAAAGATTACTGAGTGTGGAG
ACATCTTTTCATATTTCAAGCCTTATTCGTGAAGTTACAAAAGGTAGGAT
AATGAAGAATCTGTATATTTTAACAGTTGCTGCACGGAGTTCCTGCCAGC
ATGTCCTGCATAAAACAAGTTGGGATTTTCGACTGTATTTTTGATTGTAT
AAATCTTTTAGGTgactttccaaaaatgaattTGCGTTTGTCTTTACATT
TTTAGCAGAAAATTACTGATTCTTGCACATACAAATCCTTACTTCTTGTT
TACTTGCCGTTaacttttctaatttttgaaGGATaaaacttaagggctct
gaccatagtgaatttttcataatttctgtgtttaaaatgtgttttctgac
tgatgtaaccaacaaaactatggcatgttatacattttctgttagacaaa
ctattcctgaatcNNNctcgaatgtgacggagcccgattttcgaaaaaaa
aaattttccggccggtagaaccggaaatgtcccgaaaaaagcggtttttt
gagattttctccagattttatcattagttttttgcgattttctgcaccta
gatgcacattagtactgccgaaaaggtgtcgaaaaccgtttgccgataaa
aatttttttccggtctgtagaaccggaaatgtgccggaaatcgtcgtttt
ttcacatttccgtcacattttttcaacttatttaatNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNttttgcacaatgatgtaaaatggcaatgcccaaaatgtgacagagcc
caattttcgaaaaagaaatttttccggccgctagaaccggaaatgtcccg
aaaaaattggttttttgagattttctcgagatgaatgattgattaaagtg
tctatattatttttctttcaccgttaaacatcgatgcgtttcttaattgc
tttctccgttccaatagatatataaatcgaaatttaaaattatacattac
ttccattaaattctaattattcgttttataaataggtaggtatTACTTGt
ttatctggattttgcttaaaaaaacagtcataacttttgacacatctttt
tagaaaaattttccgcaaaatttaaaatagttcaattctttgcggacaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaagg
tgatgcaacatattattaacgtctttttaaagttcataacgtcatttttg
caattaagttcttaattactcttaaggggtttgattaaaaagcaatctat
aaaggcaattctttgttaaaagtgttaaagaatctaaaacataactttta
tgttcagatactaaaatcaatttgctgactatggtcagagcccttaacaa
AGTATTCCAACCTTCGTCTAGTCTCTTCTTCTCTTCTTTTTCATCCTTAT
ATTCTCTTTTTGCCGCCATGCGAGATGCTATCTTCTTTTTTGGATCTACC
CCGGTgaaggtcctatgaattaaccgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgtggctcattcaatttttccgaTATTTAGCACAAA
GAATCAAAATGGTAAAGCCTCGAATGTGACNgctaattttgattgttcaa
ttgttttacaagtttgttttggacacgtgattttaattgttctctttaat
gacacgtgattcgcgcaatgtttactttttactgctttaatgtcccttta
atgtTCCcatttttcgatgtttttgcTCCAAATTTAACGTGCTTcgactt
ttgattttttttacacttGAAAATGATAATCAAATTGTGGAAATAAATTG
ACAAATTTTTATTCTTTGGATACTCATCTCattatattgaattttttccc
ttttcccTTGCAACACTGTCCAGATTATACGGAAAATGacaacatttttt
tctgtttctttaTACTCAGAAAAATTTGAAGTAAAGTTTGTGAGAAGCTC
TGGTGCTGGTGGTCAAAATGTCAACAAAGGTATTCTTGAAAGCTGTACAT
TACGAAAAAATTCCTTCACAGTGATCGAGCTTTATTGTAGCTGTTCttcc
tttctatttttccttttaacCTTCCTTTTCAAGAGCAAAGTGAAGATTcc
ttgtattttttaatttgtacATCTTTGCTGACAgacgaaaattttaattt
taatgatttcgtatattttgatatgaaatcagttataatatataaaaatt
gGTTATGCCGGATTATAAAGCTGTCAAGATTTCAATGTGCTTCGTTTGTA
CTTCCCTTCTTAACAGTCAACACAAAGACAGAACTACGTCTTGATTTGTC
AACTGCAAACTGGATTCCAACAGAGGTGCTAATCAAACTAAAAGAACAGG
TATCGCGTTTTGTAGAATCGTTTTGTCTTGATTTCCCTCTGCATAGACGT
GTTTTTTCTTGGCAGGTTATGTCTTAAAGTAAACAAGGatcatttataga
tatgatCATGTTTTCTAAAAGAAATAGCATGTcactatatttttgaaaaa
cagaaaaaaaaacgtcATTCGAATCGAATTATATCACTACAACTACTGcc
tttttgtctcagctgcagaTTGTTTTAAGGCAGACTTCACTTTTACTTTT
ACCTGTTTgccttcaaaaacaaagaatataTCAAAATGCAAGGACTATCC
CTAACAcacaacgtttatctaacgttcacaacgtccatataacgttagat
gaacgttgaaacaacgttgtgtggaCAGATTTTGGCTAAATAACCTGAAG
AATTTTTATAGATCAGCAGATAGAACAAATAGTAGTGTAAAATTAAACTA
CATAAAGTGTGACATTTCCGATCGTGTGTAGTTCAAAtctcattgatttt
ttttctgtagCAAAACTTTTCTCTCTAAGACATCAATTTCGCTCCAAATC
TCCATCATCTATTGAAGTTTAACTTTAGTTGAGATTATGATGTACTCACG
TTCTTGATAGATAGACGCTGAAgaaatgttttctttctttgtttcaggAA
AATAATTCAGTGAATAAAGAAGGAGAATTGATCGTGGTATCAGAAAAGAC
TCGCTCTCAGCATCAGAATCTACAAGATGCATTGAACAAAGTGAAAGAAA
TGCTTCGGAATGCCTCTCACCAACCTAAAGAAACATCCGAAGAGACGAAA
GGAAAAGTCGAACAGTTCAAACGACGAGAGAAAGAGAAGCGCTTGGAACT
GAAGAAAAGGAAATCCCTCAAAAAGTTTGATCGCAAAAACATTGACTAAC
TTCAATATAACTGGAACAAAAGGTTATGTGATTATCATAACTCATGTCTA
ATTTAATTTATGTTTATCTATTTTCCCttgatttttgttatcaaaaatat
gaaagcTGTTAGATATTCCAGCCATAATCTCTGATTGAAAATAACGTATA
TAATTCttttaagaattttctttgTTAAAACAAAGGATAAAAttaaacac
aaaacaaaaaccTTTTCGAGACTCAGACCTAAAAATTTATCTTTCTTGTT
ATTTGAATACTGTATGAAGGATGAAGAGTGTGTTGTTTAGAATAATTTTA
TCTAGTTTTCTCACTAAAGTTTTTGCTTTACTCGTTCTCCATGATGATAG
CATAAACATTCGGAATGGAAGTTACAAAACCTTTTCATTTGGAAAAGCTT
CCATAAATAAACTAGTAGATTTTGTTGATCAAAAGGAAGAAGACACTAGA
ACCATCTCTTTATTAGATCATTTCAGCAATTCCATGATAACCGAGCTTCT
TGGTATCAAATTGAAAACTTTAAACCCTAACCAAACCTTGGTAAGTTTAA
AAAGTTTATGAAAATGTTTgtaatgaattttcaaaatattgaatatcttt
tgaaaCATTTCCTTTCTTCTTTAGGTTGGAGATGGGGATTTCTCAAGACT
GAACTTGTATTTACCATACGATACTTTATCATTGATTGATGAAATAAGAA
GAGAGAGAGCTTCGCGTTTGTGTATCATCACTTACCATCCATGTCAATTT
ATTTCATTACAACAATTGATGAGAACCTTAAAAGAAATGGGCGTGGAGGC
GGTGTGTAGAGTATACGACCCTTTCAACATACATGGAATGTCTTTGACAA
TGCTACTTAAACATGCTGATGGATGGGATTACACCCGGTTTCTTCTCCTA
CTCTCACCCTTTGATCGAGATTTATTCAAAGATTTCCTCAACAACACTGG
CTCTCGTGAGCCTTACAGAATATTTACACCGGATGTCGCCGCCCTTAATC
GAAATTCATTTTACTTGGAAAATAATATGATCCAAGATATTGGAAATGCG
CCCAACGACAGTGAAGCAAACTTGTAAGTTATTCAATTAACATAGAAATC
AGATCATTAAACTATTTAGGGTGTCCTAAAAAGAAGTAATGTGTCAGACC
ACTTCTCCTACCATTATGTTAcatatcatttttttcaaacttaagaAAGA
ACAACTTTATCTAATTGATTTAAATAATGATtttatacttttcttttgac
taaAAGTTACAGTCATCTAAAAAGGTCCATAAATGGCGATAAATTGATAA
AGATGATGTACCATTTTAAAGagtttataacttttgatacagtAGAGATA
TGAAAAATCGGAATATATATTTGTAATTATCGAGGTTTAAAGTTTCAGAA
AAGTACACAATGACATAATTTTATCTTCACCTTTTCCCTCTTCATTTCTC
ATTTTCAAGCTTACATCATTCTGCTTAAAGTGTTCTTTCTAACGAGGTAT
TAATTTAAACGATACGGACTGACtgccaatttttttggaatGGGCTTTAT
ATTCGTTGTGATATTTCGCATGGTTTAAGAAATACTATCAAAGTAAAATA
CAATCTAAAACATAATCAAATTTGTTTTCTCTTTGTATTTTAGGTCTTTC
CTTTCGGCTGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041369XLOC_041369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066070-exon-scaffold_45-1491911889:241650..241721TCONS_00066070-exon-scaffold_45-1491911889:241650..241721Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1510915933:241650..241721TCONS_00066070-exon-scaffold_45-1510915933:241650..241721Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1575043694:241650..241721TCONS_00066070-exon-scaffold_45-1575043694:241650..241721Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1491911889:241823..241892TCONS_00066070-exon-scaffold_45-1491911889:241823..241892Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1510915933:241823..241892TCONS_00066070-exon-scaffold_45-1510915933:241823..241892Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1575043694:241823..241892TCONS_00066070-exon-scaffold_45-1575043694:241823..241892Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1491911889:244169..244228TCONS_00066070-exon-scaffold_45-1491911889:244169..244228Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1510915933:244169..244228TCONS_00066070-exon-scaffold_45-1510915933:244169..244228Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1575043694:244169..244228TCONS_00066070-exon-scaffold_45-1575043694:244169..244228Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1491911889:244516..244598TCONS_00066070-exon-scaffold_45-1491911889:244516..244598Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1510915933:244516..244598TCONS_00066070-exon-scaffold_45-1510915933:244516..244598Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1575043694:244516..244598TCONS_00066070-exon-scaffold_45-1575043694:244516..244598Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1491911889:245247..245521TCONS_00066070-exon-scaffold_45-1491911889:245247..245521Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1510915933:245247..245521TCONS_00066070-exon-scaffold_45-1510915933:245247..245521Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1575043694:245247..245521TCONS_00066070-exon-scaffold_45-1575043694:245247..245521Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1491911889:246124..246572TCONS_00066070-exon-scaffold_45-1491911889:246124..246572Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1510915933:246124..246572TCONS_00066070-exon-scaffold_45-1510915933:246124..246572Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1575043694:246124..246572TCONS_00066070-exon-scaffold_45-1575043694:246124..246572Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1491911889:247143..247163TCONS_00066070-exon-scaffold_45-1491911889:247143..247163Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1510915933:247143..247163TCONS_00066070-exon-scaffold_45-1510915933:247143..247163Clytia hemisphaericaexon
TCONS_00066070-exon-scaffold_45-1575043694:247143..247163TCONS_00066070-exon-scaffold_45-1575043694:247143..247163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:241650..247163 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.47026	5.31971	3.82338	3.97031	3.6839	3.29589	4.9864	6.82152	6.81685	6.229	5.66389	5.74102	3.73111	4.68317	2.78162	4.36575	6.72606	8.61183	3.12865	2.91248	4.23312	2.48007	5.83402	3.24411	5.7147	3.14905	3.46583	1.85276	3.34307	3.90078
Blast
[Close]
BLAST of TCONS_00066070 vs. Swiss-Prot (Human)
Match: ICT1 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Homo sapiens GN=MRPL58 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.803e-24
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:  130 EVTKEKFEVKFVRSSGAGGQNVNKVNTKTELRLDLSTANWIPTEVLIKLKEQENNSVNKEGELIVVSEKTRSQHQNLQDALNKVKEMLRNASHQPKETSEE 432
            ++  ++  + + RSSG GGQNVNKVN+K E+R  L+TA WI   V  K+     N +N+ GELI+ SE +R Q +NL D L K+++M+  AS  PKE ++E
Sbjct:   71 DIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKE 171
The following BLAST results are available for this feature:
BLAST of TCONS_00066070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ICT14.803e-2444.55Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Hom... [more]
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