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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066069 ID=TCONS_00066069|Name=TCONS_00066069|organism=Clytia hemisphaerica|type=transcript|length=2784bpRun BLAST on NCBI protein sequence of TCONS_00066069-protein >TCONS_00066069-protein ID=TCONS_00066069-protein|Name=TCONS_00066069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp MRTLKEMGVEAVCRVYDPFNIHGMSLTMLLKHADGWDYTRFLLLLSPFDRRun BLAST on NCBI transcript from alignment at scaffold_45:241649..250105+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066069 ID=TCONS_00066069|Name=TCONS_00066069|organism=Clytia hemisphaerica|type=transcript|length=8457bp|location=Sequence derived from alignment at scaffold_45:241649..250105+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_45:241649..250105+ >TCONS_00066069 ID=TCONS_00066069|Name=TCONS_00066069|organism=Clytia hemisphaerica|type=CDS|length=6972bp|location=Sequence derived from alignment at scaffold_45:241649..250105+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066069 vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.045e-28 Identity = 93/390 (23.85%), Postives = 169/390 (43.33%), Query Frame = 1
Query: 1240 CCGGIAVSLFDLITKQLNIKYDLYLVEDNKFGGKNVTGG-----WNGMIGELINNKADIAINGFNPTRERLKEVSFTSAYQHDYLS-FVKRKLSFEEIDFVNWEFVRTMESDLALWILFSTVFSATFIVFSENIGYLLRSK--------KYFSTREVMTYIFGLAFQRDMGGRNPLRWGGRVVALSYAASMTVIMTTYTAHLTAKNIQIVPKNTFLGLKDQRLLKPTDDFKIALMSATSFEAMFRDGSEDYKRFWAFSKKYAVSSNSEGVEKVYTGELDAFIIE-AIASRTITSHSKYCENLEVFVENKTQMEVSFPYRKDFPLGEEISRQILKVREDYKIKDIIERWVYIPQCTSSMKNFTKFDVNYFGGIIFICAILLLVSIFLILAE 2364
CC G + L + + +N Y+++LV D KFG + WNGM+GEL++ +AD+ + ER + + F+ +++ L+ VK+++ +D F++ +S L L + S A + + R K + M + +G+ +G P + R++ + +A +I+ +YTA+L A + P+ G+ D RL P+D F A + +S + FR E + +K+ S +E ++ V +L AFI + A+ + E+F + RKD P + +S ILK E+ ++D+ + WV +C S G+ + A ++ IFLI E
Sbjct: 454 CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLD----SFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVE-LSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSG----FGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIE 834 The following BLAST results are available for this feature:
BLAST of TCONS_00066069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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