XLOC_040916 (gene) - C. hemisphaerica

Overview
NameXLOC_040916
Unique NameXLOC_040916
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_435:123574..129024+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040916 ID=XLOC_040916|Name=XLOC_040916|organism=Clytia hemisphaerica|type=gene|length=5451bp|location=Sequence derived from alignment at scaffold_435:123574..129024+ (Clytia hemisphaerica)
AAGGAAAAGCTTCCAAAACAACTTCAAAGGTAATGTACGtttttttggat gatttttttATACTTATCTCCTGGTCAGCTTGGTTCAGATAACAGAATTT GCTTTTGATAAAACTCAATTGTTCAAATAACGGTGAACCTTTTTATGTTT ATTATGACTAGATGGTTGCAACGAAGACCTTACCTCTGGTGCTGGGGTCC CTCTTGGGAATCATGCTGGCCATTCTGGTGGTCGTTTTGTTCTTGTTCTA CAAAAAGCGAAAGGAGAGCATCGAATTCAGCATACCGTTGGAGAAGATGA CCAGAGGGCTGAAAAGCTCTTTGAAAAGGAGATCAACTTCGTCGAAGAAC AGCAAAAGTAGTAACGACAGTATACACATCAAACCACAAGGAGTGAGTAg tgatttgtttttaaataccGTTTTATGATGGTATAGTCTCTTGgaagttc ttttcttttaaatcctgaagtTATTTTATGTATCAATGTTATGACGTTCT GTAAAGTTTTTATCAAACTTTTGATTTTGAGCAACAAAACCTGAATCTAG GCTTCTTCCACATCGACAATTTGCTGTGTTTCAAATTATTACAAACATTT CGAGTAAACCCTTTCAATTGCCGAGCCGAACAGTGTTAGATGGGTAATAT TAATGGTCTCGATTCTCTTAGAGATTTTGGATGAAAGTTTATAAAATAAT ACTCAACACAATTTGTTACAGACGCCAATTTTGAGGGACACTCAATTCTG GGTACCGGAGGTATACAACTCCATCATCCAGCCCTCGTCCGCTGCTCCCA TTCGCAAAACGAGTCGATTGCAATCGACACTGGATCGAGAAATTTATTCG AAAGCGCACGACACCTCTTACCTTCAAGCAGCTCAGCCTGAGGTTTGTAA CATGATTTTTTCACTGGATAGTTCTATTGAAAAATTAgcataaaattctg aaaaacttgaggaagcttttaaaattttaaataaagcaGTAATTTACTAG TCACAcacagcaaattttttttttaaatcaccatGATACTTTTGGTGAAT TTACCAGATTTCATTTTCACTCCTGTTTACTTAGGTTAAATTTCTGATAC CTTTGCAGGGGAGAATTTGCATGGTCAGGTTTTTCACTTTCACTTGGATT GGTAAGATAATCTGGAtctaaaaaaaaagtatatcGAAAAAAGAGATAGT GTCCTGCAATAACCTTTCCCCTTTTACAAGGTTTTTGACGGTAAAAACGA GAAACGACCTTCGACAATCTCCATGATGCGACGTAACACGTCATCGCTGA AACGTGGTGATATCGCGCGACGGTTAGCCAGTGAACAAGGCAGTCGTGGC ATGCTTAACTTCTCAATACAATATAAACAAGCAACGTACGTATTTTGACT TACCCATTTCTGTGCTATGTGACTTTTtgggcataccggataagtgggat gggggaacctaagtgggaacctaaatgaacaccggaaaagtgggatatCC ATTTCTGTGCTATGtgacttgttttgtttttgtaccATGCTAAATACAGT ctctttttacattttttatatcttatgtccctttaagccaCCCAACTCGC CTTTCTTTCAAATCAATTGATCAATTTTGAGTGACTCGGATTTTGAACTC GTTGATTTTGACGGTTCGTCAAACTTTCAAGAATCTTTCTTGATGAATTA CTTAATTCTAGCCTTGTTTAGCCTTGTTAAACGAATAtgaagttgatttt gtttttcatttttctttttagcgcCAAACTAACAATCATCATATTGAAAG CCGAAGGATTGCCGGTTCGAAAAGACGGTGAGTTTTGTGATCCGTTTGTT GACATTCAAGTCAGTCCGTACTACAAGCGTCGAATGCATTCAGAAGTTca tcaaaaaactcaaaaccCTGTCTTCAACCAATCGTTTGATTCGGAGGTGC CGCCATACGAGGTCCGTGGTCAAACGATACATTTCACCGTGTTAGATTTT AGTCAGCAGTTAGCCCACGAACCGATTGGCTCAGTGGCTTTTAAGATGGA CAGTTTGGACAGGGATGCTTTCAACGCGGGCAAAGAATTCACACTGTGGA AGAAAATTGATAAGGTAATGTAACTCAATTATaagtcaaaaacttttact GGAAGAATGTCAGGGTTTTTAAGTTACCCGGCCTGCTAAAAAGCTCTTTT TCGGATGACGAAATATCGGGGTATTTTTTTTGACATGACCTCTCTCAAAA TTTGATCACTTTCTCGAAATGGTAGACATTTGATTTCAATATATCAGCAT CCAATATAATGTTGAAATGAGTAAAAACATTACAGTGAGAGATATTACTG AAGTCTTAAAATTGATCAGGAAGTTGGATAAGACTCAACAGCCTATATTA TCTATGCCAATATTTATGGCGAATAATAATGAACTCCAAAAGTTTATTTT AAATTCACATTAAACACAATGGAATACTTTTCTCCTTAATAATAGGATGC TTTGGAATCAGGTGATCGACTAGACGGTAAACGCGAATACCCAATGGAAA TGGAGCTAGACAGGACAGCCATGTTGTTACTGCTCAGTGTCAATTATTTG AAAATCGCCGAACGATTGACGGTGACGGTGAATAAAGCACGCAATCTACT ACTGGTCGACCGCAAAGGCAAATTAGGTATGGAATTTCAACTTTCTATCG GGAGAGTGCATTCGGACTCGTGAAAAGATCCTGACTTTTGGTTTAAAGGA GCGGTGCTTAAGAAATGGTAGACATCGTTTACAAAGGTCAAAAACTAGAA GAAGGGAGGGAGTTATGCATGTATGGCATGAAAACTAACAATCGTTTTAA TCGTTCACTtcctttcttttcattttctcttccgGGGGCGGGTCAATGTA CAATATAACAGGGTGCTCCATGTAATttcgttttgtttttctttttgttt tttaattctgttttagtttttgagtaaCGTCTTAAAAGTcaaatcaagta tcaaataattAAAAGCTTCTCTTTGGAAAGCATCTAGTCGTCGTCAAAAT GAAACGATTGTTGCAAACATACCTTTGTATTGTACACTCCGCCGTCCCGC GTAAATAGTCTTAAAAATCAACTTGTTATTTCTAACCCGCTTTCACTTGT CCATGCATGCATTTTCACTCATATCGGCTTCTCTTTACTTTCcttataat ttcattttctagCACGCCGATACACTATAATCTAACGTTATCATTATTGC ATTACATTTTCATTCGTTCATATTAATGACAATACCATTATCTCGATTCA TCGAATGGTTTGCGGTGAACAACTCACGTGTGCGTTTGGGGCTGATTTGA ATCCGGGTTTAgcgtttgaaaaatgatttataAGTGTAATTGGCAAGGGC ATTTAGACATTTTAGATACAGTCCTTTCTGAAATTATAATAATCATTTGC CAGATATAACGTTAACCCCAATTAGGATGTTTCAATTTCTTTCCCGTAAA TCTTCAACTGTTTTGACTGTTAACGCGATTCGTTCAAAATCAACCACCAA TGCGCACATCGAGTTCACCATCAACCAAACCAGCCAACTTACTAACCTTA GGGGAATAATCAGATGGTTGTTTAACATTTCTTGACTCGTAGAATCTTTG TATGATCCTGAACAAAACATCCAAATCGTTTGCCGAACTATTTTTCTAAG TCGGAAAATagatacagtggagtctccataactcgaacgctcaatttaat ttaattttcggaaatttaaaaataaagattggtctataaggcattgttaa ctgaagggatcatgaaacttgttcgagttaagaaggcattcgagttatag aggttcgagttgaaGGGATTCCACTGTACTAGCAAAAAGATGAGCGATTT TGAAGTTTTCTCAGAACCATAAAAGGTTTTAACTgttcaaaaatctcaaa ccatctgattatcccttttaaacttcttttctcttcttttactAACCAGA TGGCATGTCATGCATAATCCCTCCTATTAGGACTCCTATTTCGAAACGGA AAAAATCCCGCAAAAacgggaaaatcggggaaattgaACACGAAGATCTT GAAAATAATAATGAGAATGGGAAACGAAGTGTACTGGGTAAGTGAAGCTG TAGTGGTAAGATTGGAAAGAAGTGTGTTTTCACTGATAATAAGAGTGATT CGGTAAGAGACGAAATGATGAATCTTCTTGCACTCGTTCGTTCGAATCAA CACTTCTCAAAATACCTCATCATTCGAGTTTTTCTGTAATTTGTACAAAC AGTATTTCGTGTAAGAGCCCCTGTACGCACTGCTATGTTACAAAAGAATC GCCGGTGCGGATTTGTACATGCTACTACTGTCTACTGTATTTGAGAAAGA GAGAAATAAAGAGGGCCTAACATTTCAAGTGTTTCGGAACCCCGCATGAG GGAACTGAATCAAGCAACAATGTTTTTGCCATTTGCTGCAATCTTACAGC GTTTTTCAGCCTCAATTCGTTTAAAGTTCATAAATTGTCGAATGACCACT CTAACTCTAAGTGAAAATGCATTTCTTTCTGAGTCTAAGAATTGTCCATT ACCAGCTTTGTAAGGATCTTCTCTTTACAATGTAAAGGAAGACTAAAACA CAAACTGTAGACGATTTTAAGGCTCTATCTGCACTAAGCATCGTGCACAA TTTATCAATTAATATGGCTTCAAATTGGCTACACTTCACAGTTCATATAA CTTTAAGGGGAGAAACTTGCGCTGAAAGAAACGTTCGCGTATTTTTGCAA AAGTGTATCTTCCCTTATAGTATTTAACGTGATCAAACGCTGGTATTAGT CTGCTTTCTCGATACGCGAATGTCAACAAtctttcttctcttgctttttc ttttttcacgaTCCCAGATTTTTACAGGTATTTCTAAATATAAAAATGAC GCAATCTTGACTTTCATATCGTGCATCATAAAtactttcccagctggcac acaacatcgcttcaacgttcatctaacgttcttTGGACGTTTTGACCGTT GTCTTGATGTTTTGTACCAGTGGGGATTAGAATCATGCAAATTCAgattt aattttgattcttatCTATTTCAGATCATCCGTACGTCCAAGTTACTCTA AAGCATTTCGGACGCGTGCTCAAAAAATTACGGACAGGCGTGGTGAAACA CGAAACGAATCCTGTATTTAATAAGACTTTATTATTCGATGTTCCAAAGC ACCTTGTAGACTCTGTATCACTGACAGTAAAATTACGTCATCATAACGAA CTTGGGCGTGACCGGACTTTTGCTATTTTAACGGTGGGTAAAAATGCGGT GGGGTCCGGTTCGGAGCAATGGACGGATATGTTGAATTCATCGGAGACCG TACAACGCTGGCACCGTTTGATACCTATTGAACCGGTTGATGATTAAAAT A
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065255TCONS_00065255Clytia hemisphaericatranscript
TCONS_00065256TCONS_00065256Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065256-proteinTCONS_00065256-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:123574..129024 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.86 13.29 6.69 5.73 31.07 22.02 21.82 24.31 20.25 27.55 19.85 17.21 39.76 39.53 24.43 26.99 40.94 41.23 53.94 61.49 34.06 34.55 31.78 33.5 30.9 27.65 22.66 15.87 48.71 51.18