TCONS_00065255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065255
Unique NameTCONS_00065255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065255 ID=TCONS_00065255|Name=TCONS_00065255|organism=Clytia hemisphaerica|type=transcript|length=1437bp
AAGGAAAAGCTTCCAAAACAACTTCAAAGATGGTTGCAACGAAGACCTTA
CCTCTGGTGCTGGGGTCCCTCTTGGGAATCATGCTGGCCATTCTGGTGGT
CGTTTTGTTCTTGTTCTACAAAAAGCGAAAGGAGAGCATCGAATTCAGCA
TACCGTTGGAGAAGATGACCAGAGGGCTGAAAAGCTCTTTGAAAAGGAGA
TCAACTTCGTCGAAGAACAGCAAAAGTAGTAACGACAGTATACACATCAA
ACCACAAGGAACGCCAATTTTGAGGGACACTCAATTCTGGGTACCGGAGG
TATACAACTCCATCATCCAGCCCTCGTCCGCTGCTCCCATTCGCAAAACG
AGTCGATTGCAATCGACACTGGATCGAGAAATTTATTCGAAAGCGCACGA
CACCTCTTACCTTCAAGCAGCTCAGCCTGAGGTTTTTGACGGTAAAAACG
AGAAACGACCTTCGACAATCTCCATGATGCGACGTAACACGTCATCGCTG
AAACGTGGTGATATCGCGCGACGGTTAGCCAGTGAACAAGGCAGTCGTGG
CATGCTTAACTTCTCAATACAATATAAACAAGCAACcgcCAAACTAACAA
TCATCATATTGAAAGCCGAAGGATTGCCGGTTCGAAAAGACGGTGAGTTT
TGTGATCCGTTTGTTGACATTCAAGTCAGTCCGTACTACAAGCGTCGAAT
GCATTCAGAAGTTcatcaaaaaactcaaaaccCTGTCTTCAACCAATCGT
TTGATTCGGAGGTGCCGCCATACGAGGTCCGTGGTCAAACGATACATTTC
ACCGTGTTAGATTTTAGTCAGCAGTTAGCCCACGAACCGATTGGCTCAGT
GGCTTTTAAGATGGACAGTTTGGACAGGGATGCTTTCAACGCGGGCAAAG
AATTCACACTGTGGAAGAAAATTGATAAGGATGCTTTGGAATCAGGTGAT
CGACTAGACGGTAAACGCGAATACCCAATGGAAATGGAGCTAGACAGGAC
AGCCATGTTGTTACTGCTCAGTGTCAATTATTTGAAAATCGCCGAACGAT
TGACGGTGACGGTGAATAAAGCACGCAATCTACTACTGGTCGACCGCAAA
GGCAAATTAGATCATCCGTACGTCCAAGTTACTCTAAAGCATTTCGGACG
CGTGCTCAAAAAATTACGGACAGGCGTGGTGAAACACGAAACGAATCCTG
TATTTAATAAGACTTTATTATTCGATGTTCCAAAGCACCTTGTAGACTCT
GTATCACTGACAGTAAAATTACGTCATCATAACGAACTTGGGCGTGACCG
GACTTTTGCTATTTTAACGGTGGGTAAAAATGCGGTGGGGTCCGGTTCGG
AGCAATGGACGGATATGTTGAATTCATCGGAGACCGTACAACGCTGGCAC
CGTTTGATACCTATTGAACCGGTTGATGATTAAAATA
Run BLAST on NCBI

transcript from alignment at scaffold_435:123574..129024+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065255 ID=TCONS_00065255|Name=TCONS_00065255|organism=Clytia hemisphaerica|type=transcript|length=5451bp|location=Sequence derived from alignment at scaffold_435:123574..129024+ (Clytia hemisphaerica)
AAGGAAAAGCTTCCAAAACAACTTCAAAGGTAATGTACGtttttttggat
gatttttttATACTTATCTCCTGGTCAGCTTGGTTCAGATAACAGAATTT
GCTTTTGATAAAACTCAATTGTTCAAATAACGGTGAACCTTTTTATGTTT
ATTATGACTAGATGGTTGCAACGAAGACCTTACCTCTGGTGCTGGGGTCC
CTCTTGGGAATCATGCTGGCCATTCTGGTGGTCGTTTTGTTCTTGTTCTA
CAAAAAGCGAAAGGAGAGCATCGAATTCAGCATACCGTTGGAGAAGATGA
CCAGAGGGCTGAAAAGCTCTTTGAAAAGGAGATCAACTTCGTCGAAGAAC
AGCAAAAGTAGTAACGACAGTATACACATCAAACCACAAGGAGTGAGTAg
tgatttgtttttaaataccGTTTTATGATGGTATAGTCTCTTGgaagttc
ttttcttttaaatcctgaagtTATTTTATGTATCAATGTTATGACGTTCT
GTAAAGTTTTTATCAAACTTTTGATTTTGAGCAACAAAACCTGAATCTAG
GCTTCTTCCACATCGACAATTTGCTGTGTTTCAAATTATTACAAACATTT
CGAGTAAACCCTTTCAATTGCCGAGCCGAACAGTGTTAGATGGGTAATAT
TAATGGTCTCGATTCTCTTAGAGATTTTGGATGAAAGTTTATAAAATAAT
ACTCAACACAATTTGTTACAGACGCCAATTTTGAGGGACACTCAATTCTG
GGTACCGGAGGTATACAACTCCATCATCCAGCCCTCGTCCGCTGCTCCCA
TTCGCAAAACGAGTCGATTGCAATCGACACTGGATCGAGAAATTTATTCG
AAAGCGCACGACACCTCTTACCTTCAAGCAGCTCAGCCTGAGGTTTGTAA
CATGATTTTTTCACTGGATAGTTCTATTGAAAAATTAgcataaaattctg
aaaaacttgaggaagcttttaaaattttaaataaagcaGTAATTTACTAG
TCACAcacagcaaattttttttttaaatcaccatGATACTTTTGGTGAAT
TTACCAGATTTCATTTTCACTCCTGTTTACTTAGGTTAAATTTCTGATAC
CTTTGCAGGGGAGAATTTGCATGGTCAGGTTTTTCACTTTCACTTGGATT
GGTAAGATAATCTGGAtctaaaaaaaaagtatatcGAAAAAAGAGATAGT
GTCCTGCAATAACCTTTCCCCTTTTACAAGGTTTTTGACGGTAAAAACGA
GAAACGACCTTCGACAATCTCCATGATGCGACGTAACACGTCATCGCTGA
AACGTGGTGATATCGCGCGACGGTTAGCCAGTGAACAAGGCAGTCGTGGC
ATGCTTAACTTCTCAATACAATATAAACAAGCAACGTACGTATTTTGACT
TACCCATTTCTGTGCTATGTGACTTTTtgggcataccggataagtgggat
gggggaacctaagtgggaacctaaatgaacaccggaaaagtgggatatCC
ATTTCTGTGCTATGtgacttgttttgtttttgtaccATGCTAAATACAGT
ctctttttacattttttatatcttatgtccctttaagccaCCCAACTCGC
CTTTCTTTCAAATCAATTGATCAATTTTGAGTGACTCGGATTTTGAACTC
GTTGATTTTGACGGTTCGTCAAACTTTCAAGAATCTTTCTTGATGAATTA
CTTAATTCTAGCCTTGTTTAGCCTTGTTAAACGAATAtgaagttgatttt
gtttttcatttttctttttagcgcCAAACTAACAATCATCATATTGAAAG
CCGAAGGATTGCCGGTTCGAAAAGACGGTGAGTTTTGTGATCCGTTTGTT
GACATTCAAGTCAGTCCGTACTACAAGCGTCGAATGCATTCAGAAGTTca
tcaaaaaactcaaaaccCTGTCTTCAACCAATCGTTTGATTCGGAGGTGC
CGCCATACGAGGTCCGTGGTCAAACGATACATTTCACCGTGTTAGATTTT
AGTCAGCAGTTAGCCCACGAACCGATTGGCTCAGTGGCTTTTAAGATGGA
CAGTTTGGACAGGGATGCTTTCAACGCGGGCAAAGAATTCACACTGTGGA
AGAAAATTGATAAGGTAATGTAACTCAATTATaagtcaaaaacttttact
GGAAGAATGTCAGGGTTTTTAAGTTACCCGGCCTGCTAAAAAGCTCTTTT
TCGGATGACGAAATATCGGGGTATTTTTTTTGACATGACCTCTCTCAAAA
TTTGATCACTTTCTCGAAATGGTAGACATTTGATTTCAATATATCAGCAT
CCAATATAATGTTGAAATGAGTAAAAACATTACAGTGAGAGATATTACTG
AAGTCTTAAAATTGATCAGGAAGTTGGATAAGACTCAACAGCCTATATTA
TCTATGCCAATATTTATGGCGAATAATAATGAACTCCAAAAGTTTATTTT
AAATTCACATTAAACACAATGGAATACTTTTCTCCTTAATAATAGGATGC
TTTGGAATCAGGTGATCGACTAGACGGTAAACGCGAATACCCAATGGAAA
TGGAGCTAGACAGGACAGCCATGTTGTTACTGCTCAGTGTCAATTATTTG
AAAATCGCCGAACGATTGACGGTGACGGTGAATAAAGCACGCAATCTACT
ACTGGTCGACCGCAAAGGCAAATTAGGTATGGAATTTCAACTTTCTATCG
GGAGAGTGCATTCGGACTCGTGAAAAGATCCTGACTTTTGGTTTAAAGGA
GCGGTGCTTAAGAAATGGTAGACATCGTTTACAAAGGTCAAAAACTAGAA
GAAGGGAGGGAGTTATGCATGTATGGCATGAAAACTAACAATCGTTTTAA
TCGTTCACTtcctttcttttcattttctcttccgGGGGCGGGTCAATGTA
CAATATAACAGGGTGCTCCATGTAATttcgttttgtttttctttttgttt
tttaattctgttttagtttttgagtaaCGTCTTAAAAGTcaaatcaagta
tcaaataattAAAAGCTTCTCTTTGGAAAGCATCTAGTCGTCGTCAAAAT
GAAACGATTGTTGCAAACATACCTTTGTATTGTACACTCCGCCGTCCCGC
GTAAATAGTCTTAAAAATCAACTTGTTATTTCTAACCCGCTTTCACTTGT
CCATGCATGCATTTTCACTCATATCGGCTTCTCTTTACTTTCcttataat
ttcattttctagCACGCCGATACACTATAATCTAACGTTATCATTATTGC
ATTACATTTTCATTCGTTCATATTAATGACAATACCATTATCTCGATTCA
TCGAATGGTTTGCGGTGAACAACTCACGTGTGCGTTTGGGGCTGATTTGA
ATCCGGGTTTAgcgtttgaaaaatgatttataAGTGTAATTGGCAAGGGC
ATTTAGACATTTTAGATACAGTCCTTTCTGAAATTATAATAATCATTTGC
CAGATATAACGTTAACCCCAATTAGGATGTTTCAATTTCTTTCCCGTAAA
TCTTCAACTGTTTTGACTGTTAACGCGATTCGTTCAAAATCAACCACCAA
TGCGCACATCGAGTTCACCATCAACCAAACCAGCCAACTTACTAACCTTA
GGGGAATAATCAGATGGTTGTTTAACATTTCTTGACTCGTAGAATCTTTG
TATGATCCTGAACAAAACATCCAAATCGTTTGCCGAACTATTTTTCTAAG
TCGGAAAATagatacagtggagtctccataactcgaacgctcaatttaat
ttaattttcggaaatttaaaaataaagattggtctataaggcattgttaa
ctgaagggatcatgaaacttgttcgagttaagaaggcattcgagttatag
aggttcgagttgaaGGGATTCCACTGTACTAGCAAAAAGATGAGCGATTT
TGAAGTTTTCTCAGAACCATAAAAGGTTTTAACTgttcaaaaatctcaaa
ccatctgattatcccttttaaacttcttttctcttcttttactAACCAGA
TGGCATGTCATGCATAATCCCTCCTATTAGGACTCCTATTTCGAAACGGA
AAAAATCCCGCAAAAacgggaaaatcggggaaattgaACACGAAGATCTT
GAAAATAATAATGAGAATGGGAAACGAAGTGTACTGGGTAAGTGAAGCTG
TAGTGGTAAGATTGGAAAGAAGTGTGTTTTCACTGATAATAAGAGTGATT
CGGTAAGAGACGAAATGATGAATCTTCTTGCACTCGTTCGTTCGAATCAA
CACTTCTCAAAATACCTCATCATTCGAGTTTTTCTGTAATTTGTACAAAC
AGTATTTCGTGTAAGAGCCCCTGTACGCACTGCTATGTTACAAAAGAATC
GCCGGTGCGGATTTGTACATGCTACTACTGTCTACTGTATTTGAGAAAGA
GAGAAATAAAGAGGGCCTAACATTTCAAGTGTTTCGGAACCCCGCATGAG
GGAACTGAATCAAGCAACAATGTTTTTGCCATTTGCTGCAATCTTACAGC
GTTTTTCAGCCTCAATTCGTTTAAAGTTCATAAATTGTCGAATGACCACT
CTAACTCTAAGTGAAAATGCATTTCTTTCTGAGTCTAAGAATTGTCCATT
ACCAGCTTTGTAAGGATCTTCTCTTTACAATGTAAAGGAAGACTAAAACA
CAAACTGTAGACGATTTTAAGGCTCTATCTGCACTAAGCATCGTGCACAA
TTTATCAATTAATATGGCTTCAAATTGGCTACACTTCACAGTTCATATAA
CTTTAAGGGGAGAAACTTGCGCTGAAAGAAACGTTCGCGTATTTTTGCAA
AAGTGTATCTTCCCTTATAGTATTTAACGTGATCAAACGCTGGTATTAGT
CTGCTTTCTCGATACGCGAATGTCAACAAtctttcttctcttgctttttc
ttttttcacgaTCCCAGATTTTTACAGGTATTTCTAAATATAAAAATGAC
GCAATCTTGACTTTCATATCGTGCATCATAAAtactttcccagctggcac
acaacatcgcttcaacgttcatctaacgttcttTGGACGTTTTGACCGTT
GTCTTGATGTTTTGTACCAGTGGGGATTAGAATCATGCAAATTCAgattt
aattttgattcttatCTATTTCAGATCATCCGTACGTCCAAGTTACTCTA
AAGCATTTCGGACGCGTGCTCAAAAAATTACGGACAGGCGTGGTGAAACA
CGAAACGAATCCTGTATTTAATAAGACTTTATTATTCGATGTTCCAAAGC
ACCTTGTAGACTCTGTATCACTGACAGTAAAATTACGTCATCATAACGAA
CTTGGGCGTGACCGGACTTTTGCTATTTTAACGGTGGGTAAAAATGCGGT
GGGGTCCGGTTCGGAGCAATGGACGGATATGTTGAATTCATCGGAGACCG
TACAACGCTGGCACCGTTTGATACCTATTGAACCGGTTGATGATTAAAAT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040916XLOC_040916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065255-exon-scaffold_435-1491911889:123574..123602TCONS_00065255-exon-scaffold_435-1491911889:123574..123602Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1510915933:123574..123602TCONS_00065255-exon-scaffold_435-1510915933:123574..123602Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1575043694:123574..123602TCONS_00065255-exon-scaffold_435-1575043694:123574..123602Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1491911889:123735..123965TCONS_00065255-exon-scaffold_435-1491911889:123735..123965Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1510915933:123735..123965TCONS_00065255-exon-scaffold_435-1510915933:123735..123965Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1575043694:123735..123965TCONS_00065255-exon-scaffold_435-1575043694:123735..123965Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1491911889:124295..124465TCONS_00065255-exon-scaffold_435-1491911889:124295..124465Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1510915933:124295..124465TCONS_00065255-exon-scaffold_435-1510915933:124295..124465Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1575043694:124295..124465TCONS_00065255-exon-scaffold_435-1575043694:124295..124465Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1491911889:124804..124958TCONS_00065255-exon-scaffold_435-1491911889:124804..124958Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1510915933:124804..124958TCONS_00065255-exon-scaffold_435-1510915933:124804..124958Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1575043694:124804..124958TCONS_00065255-exon-scaffold_435-1575043694:124804..124958Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1491911889:125345..125687TCONS_00065255-exon-scaffold_435-1491911889:125345..125687Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1510915933:125345..125687TCONS_00065255-exon-scaffold_435-1510915933:125345..125687Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1575043694:125345..125687TCONS_00065255-exon-scaffold_435-1575043694:125345..125687Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1491911889:126069..126249TCONS_00065255-exon-scaffold_435-1491911889:126069..126249Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1510915933:126069..126249TCONS_00065255-exon-scaffold_435-1510915933:126069..126249Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1575043694:126069..126249TCONS_00065255-exon-scaffold_435-1575043694:126069..126249Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1491911889:128698..129024TCONS_00065255-exon-scaffold_435-1491911889:128698..129024Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1510915933:128698..129024TCONS_00065255-exon-scaffold_435-1510915933:128698..129024Clytia hemisphaericaexon
TCONS_00065255-exon-scaffold_435-1575043694:128698..129024TCONS_00065255-exon-scaffold_435-1575043694:128698..129024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:123574..129024 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.6531	12.964	5.97814	5.21829	18.0435	14.7236	15.3106	17.4999	17.8118	22.5921	18.8229	15.4112	30.2238	32.9791	21.2052	23.6668	24.6602	24.5405	40.4143	45.6199	17.2342	20.8533	23.9355	23.1799	18.5592	14.7599	12.7854	10.4045	47.6189	48.7416
Blast
[Close]
BLAST of TCONS_00065255 vs. Swiss-Prot (Human)
Match: SYT3 (Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.731e-41
Identity = 98/289 (33.91%), Postives = 156/289 (53.98%), Query Frame = 3 
Query:  549 GMLNFSIQYKQATAKLTIIILKAEGLPVRKDGEFCDPFVDIQVSPYYKRRMHSEVHQKTQNPVFNQSFDSEVPPYEVRGQTIHFTVLDFSQQLAHEPIGSVAFKMDSLDRDAFNAGKEFTLWKKIDKDALESGDRLDGKREYPMEMELDRTAMLLLLSVNYLKIAERLTVTVNKARNLLLVDRKGKLDHPYVQVTLKHFGRVLKKLRTGVVKHETNPVFNKTLLFDVPKHLVDSVSLTVKLRHHNELGRDRTFAILTVGKNAVGS-GSEQWTDML-NSSETVQRWHRLI 1409
            G ++F+++Y   + +L + IL+A  LP +    F DP+V I + P  K++  ++VH+KT NPVFN++F   VP  E+  + +HF+V DF +   H+ IG V   +D+L   A     +  LW+ I +   E  D  +                 L  S+ YL  A RLTVT+ KA NL  +D  G  D PYV+ +L   GR LKK +T + K+  NP +N+ L+FDV    V++V L++ +  ++ +G +    +  VG +A    G E W +ML N  + V+ WH+L+
Sbjct:  301 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPVFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV--LDNLLELAEQP-PDRPLWRDIVEGGSEKADLGE-----------------LNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSD-PYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPDAADPHGREHWAEMLANPRKPVEHWHQLV 568
The following BLAST results are available for this feature:
BLAST of TCONS_00065255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT31.731e-4133.91Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1[more]
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