XLOC_040579 (gene) - C. hemisphaerica

Overview
NameXLOC_040579
Unique NameXLOC_040579
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_421:45811..51245+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040579 ID=XLOC_040579|Name=XLOC_040579|organism=Clytia hemisphaerica|type=gene|length=5435bp|location=Sequence derived from alignment at scaffold_421:45811..51245+ (Clytia hemisphaerica)
AAATCTTTATGTTGATGCTTTACAGGAGAGTTTTAACAATGTCTGGAGAT
TAAGAGCGGATCAAGGATACTTGAATGGATACAGGAAACTCTTTacaaaa
cgaaaaataaatgATCCACAGAGCTATTGCGGTGATGCAGAAAGAATACA
AGTTTAAGATGCAGAAACACGTTATTTATGTTTTAACAACTGCGGTTGAG
AGCTTTATCTTCCATATAAGGCTAAAAAGCCTCCGGACACCCTCCTTCTT
CGGTAAGCATAATTAAGTTATTATTAGATTCATTAGTTGATTTACTTGAT
TatcagctgacacacaacgttgtttcaacgtcaatCTAATgtccacaacg
tccatataacgttagaatacaacgttgtgtgccagctatgTATAGTTATA
AAAACGGAGTGTTTATCAAAGTCGAAATCACCTCTTACTCAACTGTTCAA
GGAGGAGGTTGTTTTGCTGCACAGAATGGCAAAAATGCAGATCATTTTTT
TGTTACTAGCTCTCATTCATGCTACTACTGCCAAAGGTaacttattcaat
ttttgtttgTGATTGGGCTTAAGCGATTTTATCGCCGGCGTTGAtataat
accgagtttatgtataagtgtttttctgcgacggagacggtgaggttcta
atttgactagatcctgaccagctgaggacgaagGTAAATCatcactttta
ccgtcctcgattttgcgagtcaaaactgcgggttattccaaatcgcttca
gtcactccgccgtcctcaaaattgcaaatacataaactcgcgaATTTTCA
CACCCCGGTcttacagccccggtggaattttttcccACAGTAGTagggat
aaatttttttatcgaaatcccaatgggagtagaaattatattgttcccga
gcttaaaatatccagtagggatggttttggaCAGCAATTTCttgcattga
atttcgaatggggatggtATAtgccaaagtcaatttcccattggggctga
aattgtagtgTTCTGTCCatcggggacaaaattttggcccAGCGGGTATG
TGACACAGGGGTTTATTTTCGAATTAAAAGAGGGATCGTTCGCTAATATT
GTATACGATTTTCTTAAATATGAAAGTGTATAGTATTTATTAGAATGTTT
AGGTGTCTTGGTAACTAAAGGATCTTAACGGACGATTCTAAAATATATAT
GTGTTTACGGAAAAGCTAGCGGCGGAAGAGTCAGGAACAACCACTTTAGA
ATTTAAACTCCCTCTTCACAGACTGGGACCtctttcccactggaaaaatt
gtccaagaTATCGTCCCCAGTTGAAAATTATACTCACCCTTTGCGGgtgt
tgatttttgattttggaaccCTTATAGGAACTCaatttgttttaaatggt
ttttgtaccccttggaaggactttcgagggtgtgaaagagggacccttat
ggctcgcacatacctggcacccattttgcctaaaaactcCTCCCCCCCGG
GGGCCCCAGTGATacttgtgagaagggggtgtttgcTAATTACTTCAGAT
CTCTTCTAGGATTTAGATATAAACTTGACTGAGAATGTTTCATTTATTGA
TTTCAGCATATGGCGGTTACTCACCGTTCGAGTCTGACTACCAAAAGAAT
GATTTCCAAAACAAGGGTGAgattttgattacaaaaataattCCTTGAAA
TGACAATGAACCGTACTTACGGCTATTTTTCCAAAAGCGAACTCAACATT
TAAATCGTTTTTCTGAGCGCGTTGATTGGTCAATTATAtcagaatttcaa
aatgaatgtTGAGCCAGACTTTTGGAAAGATAGCCGCATACTTATGGAAT
ATATCGGAATTTGAAAGGGAAATCCCATcataaaagttaactttctaCAT
GGAATATAAGAGCTAGATTTTTTTGTGTAGTGATGGTGATTTCCCTAATG
ACTGTAAACTTAATTGATGAATATTTATGGTGcataccgagtttatcgtt
ctacatctgttGGCTTAAAAACCAGACAGgatgttagggaaatatggcga
tagactctctaccttcactcatatATCATTTTCTCTCAatccggctgata
atcgaagtatcgattgacTATCTATCTATTTCTACATCTGTAATTTGAGC
TTTATGAAGCTCATTAAATGTATTCTAAATTCAAAACGTCATGTTGATGC
TCCTATTTTACTTAGACTACCCTGAGGATCACAACGATAATGACAGATTC
TATGAAGAGTTCAAGCAGTCAAGTATGTCGAATGATATTTCAATACGATC
CACGGGTTTCGGATTAAATCTAGCTAGCTACCATCTGTTTTGTTGAGata
catgtttttatttacCAAGCAAGTGTCtttgccccttggtcaggctcctg
tatgcttaagttttcaaagcatccaggcatagctatacttatgattcacc
ccgagtcaagtttttagtaaaatttcagaaatgttgtaaaaatttgttca
gattttgggagcagtgggaTGTaactagccgtggaatgtcttttttttac
ttgaccattACCAGACCTTTTAAAAACAGatgaaaaaatgacaacttgaa
aaatatttcaggctggaatatatgcttaagaattctgcaaatctgagcct
ttatatgcttataaacgttatgcttataaaaatacatGTAATAATATTGC
CAGGAGACTTCTTTTTCAGAAGGATAGTCTTTATTTCAGTGTTGCCGtag
aaataagaacaggataagaacaatttggaggctcaaaatccaaaaataat
gaGAACAGCTGAGCCTAAAAAAAACTAATCTTATGAAAAAGGGGAATAGT
TTTTTAATAGATATTTtcatctctctctctctctcttgaAGATTCTGCCA
TTGAGAGTGATCAAATTCAAGAAGCATTCGACTTTGATGAGTACGAAAGA
GAATTGAGTAAGTCTTTTTCAGTGGTCagcaaatttttccattttgaatt
ataactgaaaaccttaagggttgatttttttgctcaaatttactcatatt
tggctaaattttctttgcactgtaagggtaatTGTGGGCCGCACGTAGGG
TCGTTTTTGAATAGAGTGCCCCCCCAGATCAAATGCTtcttaattcgaac
aagttttccccgtccctttagttaacaatgccttatttATTatccttaaa
tcgaacaaaCTTTGGGTCCCTTGGTTATGGAGGctttgttgtattttttt
tcttcacttttatCTTATTCTAAAGAATGCGCTGATAGATACTCCAACTG
TGCAAGTTACGCGTGGGTTTGCAAGAAAACAGGATCCAGTTACAGAAGTT
TCCAGCAAGGTTGTCGAAAGACATGTGGATTTTGCAAACCTGACGCGCCA
CCAGGTAgattattgggcttttccagaaagaatTTGACATGGACATGATG
ACTTTTGACTCCTGGACAGCAGGGAGTCTTAAATTCTTCATGTTTTTGAG
TAGATGCACTTCAATCCCTATTCGGGAAAAAAAGCAAGGTTGAGTATAAT
TTAAATTCCAAAAGCTTCTAAAGAAGTTTCCCTGcaagaaagtttgaaat
aacGGCTTAGATACTTACGCGACCTATTGGGCCattgaagaattttttaa
acGTTATTACGCTGTAGTTAGCAATATATAAACTTAGAGTTAAAATTTCC
ATTCTTAGACTTAAGTCACCCCCGAGGCCTTAAACAattctctttttcat
tttcagcttACGTAAGCGCTCGACCGGGAATATCACTTTCTAAAAAAAGA
GATATTATGAGTAAGTATATATACTTTTTCCATAATACAATTTACCTTGG
ATGCTAGACCATTAGAGCcccctctcaccaacttttgctcgttctcctag
gCAGCTCCTATTTAAGCAAACGCTTACCACTTTTATGTATTATGTCTGTC
CTGTGACATGATTAATTagcagactagtttgctagtctacagAATGAAGA
AGGGGTTCCAGCCGCCATGAAGGAGGCGTTTAGCAAAGGGAGTTCGTACA
GAAACTGTTCTGATGAGAAACTTTGTTATAATTTCTATCAATAGAAGCCT
GTTTGGATGCACACAATGCTAAACGAAGACTTCACCAACATACACCAAGT
ATGATATACAGTCAGAAGCTGGCTGATCGAGCCCAAACATATGCTGAATA
TTTGAGGGATACAGATAAGTTCGATCACGATGACTTTAGAGGATATGGAT
TTGACAAAAGTATCGGAGAAAATCTCTATTGGTCATCATCCAGAATTAGA
ACACCTGAAGACGCTGTTGCTTCTTGGTATGTTAAGATAAAACGAAATAC
TTTTttcccgagggggggggggggactaggtttgcgaggtgatgggtcca
aaaatcgaaaattgacccttagagagatggAAAATTGGCGTTTTTGTGAC
CCTTAAAGAgatctttctcaaaattttcttttgaatggtttttgtacccc
tttgagaggctttcgagggtgtgaaaaagggacccttatggcgcTGGCAC
CCATTTTACCTAAGTACTCCCCCCCGGGACTTTTTTCGTGTAATGGTTTT
CTGTGCGTCTTAAAAACCTagtaaaacaacaatttttatcCTCACTTACC
TTTGAAGGACCAGCATAAAGTGGAATataatttagatattttattggtag
aaaattcttagaaaatCCGTTGGTAAataatttcatcacttttttttACC
GATGAACAGTTTTTGCCGATGAAAGACTGAGTTGTTTTAGCATTTTCTAC
CGTGATTCATCTGATATGTCACGGTCAAGTTTTTCCCCTAAAGTTTCTTG
ATTGTCTTTTAATAAAAACTTACTGAATTCTCTTTCTAAGATCGTTGGAT
AGTTTAATTGAGCTACCGATATGTCACGGTcaagtttttaaactttttcc
cAACATTTTCTTGATTTGAGAAGACAAGTTAATCAAATATGGGCGAAGTC
TCAGCTTTGAGATGTGattcaaaccaaaccaaaccaaaccTTTTAATAAA
AACTTATCGGATTCTCTTTCTaagatttttggatattttaaaTGAAGAAC
TACTTGCTaaggaaaaaaatcattacATTAATTTCTCCAAACTCTTTTAT
TCGACTGTTTTTCTCCTTCAGGTACAATGAAATCAAAAACTACAACTTCA
GAACTAGCGCATCCAACGGTGGCGTTATCGGTCATTTTACGCAATTGGTA
TGGCAAAGGTCTAATATTTTGGGATGTGGTGTGGCTACCTCTTCAAAAGG
AACCTGGATAGTTGCTCGATACGAACCAGCTGGTAACACTAGAGGTGCAT
ACAAAGCAAATGTTCATCCATTGAAAGTAACCAGTGGTGATGCTTTCTTT
GATAACAAAGATGAGATAATTTTGTAAGAAAGACT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064692TCONS_00064692Clytia hemisphaericatranscript
TCONS_00064693TCONS_00064693Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064692-proteinTCONS_00064692-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:45811..51245 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.89	11.16	10.18	7.08	4.85	2.88	9.12	6.5	4.07	3.89	6.38	3.62	18.6	9.65	4.13	6.61	3.59	2.42	36.46	63.77	0.87	1.27	8.04	7.5	4.38	4.09	1.23	0.29	6.99	9.15