XLOC_039642 (gene) - C. hemisphaerica

Overview
NameXLOC_039642
Unique NameXLOC_039642
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_385:328362..336320+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039642 ID=XLOC_039642|Name=XLOC_039642|organism=Clytia hemisphaerica|type=gene|length=7959bp|location=Sequence derived from alignment at scaffold_385:328362..336320+ (Clytia hemisphaerica)
TCAGAAGCTAACAAAATTGAAATGGATAACCGAACTAAGCTACCGCCAAT
GAGTTATTTCAAATTCCGCTACAGTTGTTATTTGTACGTGCTAGATTTCA
ACTCAACTGAATCTTTTCGAACACTTTACGAACTTGAAGATGAAACTTTC
GAAATAGTTGCTGGAATATTTTGTTTCGCATTTTCCGCATTCATCATTGC
TGCCAATTTTACATTCATGTTTGGGTTGTTCAAAACTAACAAAGGATTAA
GTCGCGTTCAGAAGTTATTCGTTTATGTCTCATGCGTTGATTTACTTACT
GGTTTTATTGGTATGCCAATGTTAGGATTTAGTGTCGTCCGTGGTTTGAC
ATGCCTTCAACAAGCTGTTATGATCTCCTTCATTGTGTTTCCAGTCATTG
CCGATGGATTTGGAATGTTAACTATATCCTTACTGAGAGTGCGGTCAATA
GTTAGGCCGTTAGGATCAACAAAAATGGCTCGTCGTAAAATGGTTGTAAT
TATGGTATTGCAAAATATTCTGAGTGTAATTTTTACTCTGGTTTTCTTCA
TAGTCTACACTGTAGGCAAGGAAGAtatattgaattttcagattgtCAGC
TATATGGCATCTGCGTTTGTGATCAGTTTGAACGCAGGAATATTGTCATG
CGTTTGGTTTACCTTACATCATATCCGAAAGAAAGAAAACCAAGGTGACG
AGCTAAGTATCGTGGATAAGAGACGACTAATCAACCAGCGGAAATCCAGT
AAAACCCTTCTAATCATTACGTTAGTAATGTTATTCTCGATGATTTTACA
GATGCCATCTCTCATTATATTAAACAAAAGCTTGAACGATTCAACGCTTT
TAGAAGGGAGTACCTTCATCTGGACAAAACGAAATgctgatttttcagct
tttgtTTCTTCTCTGAACACTGGTTTTAATTCAGTCATTTTGATGGCAAG
GAGTAATAAAATACGAAAGTTTATAAAGCGACGTGTAACTACAGCTTTAA
CTATGATTACAACTTATTCAACTGACTCTCAAGGCGTGTAACTACAGCTT
TAACTATGACTTTAACTTTTTCAATTGACTCTCTGATTATGAAGGCCGTA
TCGTGTCTAATTTCATCTTAATAGTTTTCAATGACACTTTGAACAATACG
CTTTTGAACTCAATAGTTAAATCGcaatagaaaatttttggagttaaaat
tttttttatcattgaatttcaaatgggtatGAAAATAAAGTCAATTGTCC
AATCGGGCtgaattgtagggtatttttcacaCCAGGGACGAAACTTTAGC
CGAATATCCAGAGTGTAGAGGGTTCAACCGGGTCTGTGCCAGAGGGGTGT
AGCTTAGGCAGCGATGTTACAGGGGGCGGAAGGTAGAATTGGTCTACTTC
GCACTTCAATTCTTTTGTAATTAGTctcattattattttattaaataTAA
TCAAGTAATTTATTctatttaaatattcttttaattCCTTTTTAAACAAA
TCATCCAAATATGACTTCAGCCCCGAAATTTTGGTTACCAAAAGATCCTG
AAGTCTGTTCTTTTAGGTTATTCTACTTGAAAAGATATTTACAACGGTGA
atcactttttaaaaacataccataaaatgggtgctgagaaattgttaaaa
aagtactgacatacttttgagacagactttaaatcaaatttaaaagatAT
CTTATAGCAAACCCAACTCATGAAGATTTCAACCCTTGTTTTCATCGATT
CGGCTGGTAGAGCCGTCTTCTCTCCTAGGCTAGACTGGTACACCAGTCGG
GGTGCGATGATATCACGCGAGAAAAGTGAGCGtgggagttaggtaagcgt
aggaagaaattttgtcagtGGCAAGGGCTGAAAACTTTGCTTTGTTAATC
AGCaacctctcaccaacttttgctcgttctcctacgcagttTCTATTTTA
GCAAACGACCACCCTCTTTATGTTCCCGCTCtatgacatgattaattaac
agactagtttgctagtctacttctctttatttttctttggaaaattgaaC
TGTCTAAGCAGATTTCTTGACATATGATAAAGTTCAGTTTTAACCTAGGT
ATCAATaatcttttgataatttttcttttaattttaagGGTTTATCCATT
taggatttatttttaaaactaaatCATATATAAAAGATGGAAAATAATCG
ATCGATCGCCCTGGTCAccgagatttgatatttcacagaaaagtgctacc
aaggggtatttcgggtcccatatcttccgaaggacttttctgtttgcctt
gaaatttaacaaacttcttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaatgaacgttatagc
ataagtagaaaaaaagctcattttttgcaatcgcaaatttaaccgctaaa
aatcgcgaatttttcaaccaaaaatacattgaaatataGGGCTCttaatt
ctctaaaacaagcaaaaaattaccataattatatttgactgtcaaaagtt
acaggcattcttgtttccactgctaattatatctggacagactttaatta
acGTTTCCCTCATATATTTgcttaccgtgaaaagcacaggtcgaaatcat
atatcgacgctgtgccgacgaatcgagattctattcagcgcgcaatcaac
gaagacaaaagtaaccatgacgaccatccaagatcttggatgaggttcaa
agttgatacttttattcccgtcgttgaaaacacaactcacaaatatcatc
aatgctttttaaaaagagtcagtgatagagaatcacaacaaaaagtctgt
ctattatttcgattcaattaaaatagcatttccataattaatagtttagt
aactactgttatacatttgggaatcatgtaaaagatNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtagtaaactgcatactgatacagtc
tgctagacattaatatggtaatatttactcttcatctttgattctttcta
cagtgattagattgacacatgcccgatgaaatttttattattggtcttca
gaggttaatatattctttgaaaacttaacctctgatactcagggtaatat
ttgcttcattaaaaaactttcagcaaagttttgattttaacgTCCAACTT
GCTCAAATGAAAACGTTTCATTCATTGATTCATCTCATGGATAGATTGAC
TTTTCATATATTTGAAACAGAATTTATGAAACTGTActtgtaaaattttt
gattttaggacAGTTTGAGaacgtgaaaaattgaaaagtggtATGGGTAT
GGGTCacttttccaccaaaatttAACCTCTCTTTAGGGTCAGGTTTCAAT
GAACATTTTTGATAATCTACGTATATTAATAAGGGATTATGTAGAACAGG
TAGTAGAAAGTTTTTGTCATTGCTATAAATGGGATCCTCCAGAAAAGTTT
TGTACATGGAGGGTGGGGTGGAGGATAATTTTATATTGGATATTTCTTCC
GGgagtagtgaaaaatctgcaaaatttgccttgttttaggGGAAAACTTG
CGCTAATTaagggtgattttgaatgttcGGGGGGTAagctgatgcttgtc
cgggggtgagATCCGTTGTCCGGGGGATCAGAATTCACAATATCCGGGGG
TACCATCCCcccatatttaaattttttctggaagagcccaatcctTTAAG
GGACCTTGGGTAGCTTAAAAACAACCCTTAAATCTTTCGATGTCTAAGGC
AAATCgtatttttgacttttctgtTAGCTATATAAAGCAAATtatgtcat
ttaaaaaaagatagtatcggtttcaaaaaatagtatcgCTATCGGCTTAA
CAAAGAAagtatctttttgaaaaaaaagttaaagtcgttttaacaaagat
agtgtagttttaaaagatagtatttatttccacTTTGGCGCTCCATAGTT
TTTCAAACTTCATTACATACAAACACTTGAGACACTGTTTACCGATCTTT
TAATAACGAAAACTAAAAGGttctatttttacataagtttcATGTCAGAC
ACATATTACATATCGGGACTGTGTCTGTCTATTGTTTGTATTATGCTTAA
TAagcaaaaacagtttttcttttcctctttctagccaatcttgctccaca
tctgtgtcaattcaatgtgaaaaagtcattaaaatttacGAGTAAAGGTT
TGGGGAcacgagaattttttttttcgcgctggtgcaatgcaacatgctcc
atcccaccaacacaagaaaaaagtgtgtgtctcatggtttctttttttat
tccatgggacaaaaagtgacggaaataccccaaaaaaatcaatttcgctc
cattgtcccagggacaaaagtgagagaagcacaaatgttattaaataaaa
aatgggttggagacacgagaaagcgtttcaggttggtagGATGTTGTATT
GCACCAACACGAAAAAAACTTCtggtgtccccaagccttaagcaaacgat
atcacttttatttaaaaacataacCTTTGATGTCACGACATCGCTGCAAT
TTTTGTAAGCAAAACGAAAACGCTGGCTGTTCTTATGAGTAATGTGATAT
TGctaaagataaaaatataataagGACAATTTACAGTTAATTCTACTTAA
TGTTTGGATGAGTTTAATCACCCTTGTTCCTGTTCATGTTTTTGTACCGT
AAATATATATTCTTATTCCAAATCTTCCAAAAGTTTCCTTTTTTCTCACT
GCCTCATTTCGAAATCCCAAACTTATGCCTCCCAGTTTATCAAACACCCA
AAGgtaatactctcgggtacctaatagccgtcccccctgtcccgctaatt
aatttttcgaaaattttccacctaggacattcTAACCCCcggcttattaa
tttttgggaaaatgtttttgaaagtttcctcttttgtcctaattcggCTG
TATTAGctcccttttcaaaaattctccacccaggacatttttattccaac
cccccccctccACAGCttataaagttttgagattttttccaacttcCCTG
CTTATTTTAactcccccgcttattccaatccccccggctattaggtaccc
gagagtagttccTAGATTTTCAAATTACGTAAACTCTTTTATTTAGTAGC
TTGTTTTTTACCCTGCATTAGTAATAATTCTTCAGTTTTTTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgatacaaa
aattaaaaaactttttttacggTTTTCCGTAGGGGCTGTGTAaaatcaat
ttctgaaaaagaaatagTGTAACGAcagaattcgaaaaaaaattgacaaa
acttTTCTTCTTGTCATATAGCGTGAAAAACCTAAAACAATAACCTGAAC
AATTTTTCTTCTCAGGTGAATTTCTTGTAAGTTAGGTGTGAAATGCTTCC
TCCTCTCGGGCGATCTCCTCATAATTTTCTGGATGAATGCTCTTTTTTAA
TCCTTTAATTCATGTTATTAATTCACTtatcgatttcaaattttgagatt
agaacttcatttttgtAACTTGTAGAAGCcaacaaaattgaaatgaataa
cCGAAATAAGCTACCGCCAATGAGTTATTTCAAATTCCGCTACAGTTGTT
ATTTATACGTGCTAGATTTCAACTCAACTGAATCTTTTCGAACACTTTAC
GAACTTGAAGATGAATCTTTCGAAATAGTTGCTGGAATATTTTGTTTTNC
CGCTACAGTTGTTATTTATACGTGCTAGATTTCAACTCAACTGAATCTTT
TCGAACACTTTACGAACTTGaagatgaaaatttcgaaatagtTGCTGGAA
TATTTTGTTTCGTATTTTCCGCATTTATCATTGCTGCCAATTTTACATTC
ATGTTTGGGTTGTTCAAAACTAACAAAGGATTAAGTCGCGTTCAGAAGTT
ATTCGTTTATGTCTCATGCGTTGATTTACTTACTGGTTTTATTGGTATGC
CAATGTTAGGATTTAGTGTCGTCCGTGGTTTGACATGCCTTCAACAAGCT
GTTATGATCTCCTTCATTGTGTTTCCAGTCATTGCCGATGGATTTGGAAT
GTTAACTATATCCTTACTGAGAGTGCGGTCAATAGTTAGGCCGTTAGGAT
CAACAAAAATGGCTCGTCGTAAAATGGTTGCAGTTATGGCTTTGCAAAAC
ATTCTGGGTGTAATATTAACACTGGTTTTCTTCCTAGTTTACACTGTAGG
CAAGGAAGAtatattgaattttcagattgtCAGCTATTTGGCATCTGCGT
TTGTGATCAGTTTGAACGCAGTGATATTGTCATGCGTTTGGTTTACCTTA
CATCATATCCGAAAGAAAGAAAGCCAAGGTGACGAGCTAAGTATCGTGGA
TAAGAGGCGACTAATCAACCAGCGGAAATCCAGTAAAACCCTTCTAATCA
TTGCGTTAGTAATGTTATTCTCAATGATTTTACAGATGCCATCTCTCATT
ATATTAAACAAAAGCTTGAACGATTCAACGCTTTTAGAAGGGAGTACCTT
CATCTGGACAAAACGAAATgctgatttttcagcttttgtTTCTTCTCTGA
ACACTGGTTTCAATTCAGTCATTTTGATGGCAAGGAGTAATAAAATACGA
AAGTTTATAAAGCGACGTGTAACTACAGCTTTAACTATGACTACAACTTA
TTCAACTGACTCTCAAGGCGTGTAACTACAGCTTTAACTATGACTTTAAC
TTATTCAACTGACTCTCAAGGCGTCTGATTATGAAGGCCGTATCGTGTCT
AATTTCATCTTGATAGTTTTCAataacattttagaaaattttattagTCT
TTTTTGCAGCCCTAAAAACGCCCTGTCtaacagccccggtgaaactgaat
agggataaaaattctattgttctcgggtcaaaaaaaatcaagtgggGATG
CTTTTggag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063257TCONS_00063257Clytia hemisphaericatranscript
TCONS_00063258TCONS_00063258Clytia hemisphaericatranscript
TCONS_00063259TCONS_00063259Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063258-proteinTCONS_00063258-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:328362..336320 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86	1.71	1.28	0.6	0.09	0.16	0.83	0.46	1.08	0.73	1.48	1.04	0.95	0.79	0.69	0.73	0.35	1	0.37	0.83	0.34	0.21	1.53	1.67	0.13	0.6	0.2	0.22	0.7	0.68