XLOC_039383 (gene) - C. hemisphaerica

Overview
NameXLOC_039383
Unique NameXLOC_039383
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_373:40967..45160+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039383 ID=XLOC_039383|Name=XLOC_039383|organism=Clytia hemisphaerica|type=gene|length=4194bp|location=Sequence derived from alignment at scaffold_373:40967..45160+ (Clytia hemisphaerica)
TTTAAATCCACACCGTCATCCAGCAGTGCGGAGTTTGATAAGGGAAAGCT
ACACATTGTGAAGTCTAATCAAATGTTTATGGTATACCAAGATTCATGAG
ACAAAAAATGTTGCCAAAgcttgaaaaattatttcacttgTATGAAGGGA
ATCTTTCGTCTGCTAAGGAAATGTTTCGCTCCTTCGTCAAATTTTAGTTG
ATCAAACTTTAATCTCAAGATGAATTTGTATGTCTTGAAGATACTTCTTA
GCTTCACTATCTTATTCAAGGCATCGTCGAAGGAGTACAGCAGAATTTGT
TTTTATACCAACTGGTCACAGTATCGTACAGGAGTCGGCAAGTTCACCGT
AGACAACATCGATCCATTCCTTTGCACACATGTTGTGTACGCGTTCGCAC
AGATTGGTGATGGTTTTGAGCTTCAACCGACCGATGAGAATGACGAACAT
CAATACAAAGAAATTATCGGACTGAAAATCCAAAATCCTTCACTGAAAGT
TTTGCTTGCAGTTGGTGGTTGGTTGCATGAGTTTGGTAGCACAAGTCCTT
TCTCTAAGGTGGTTGCCTCgaaagaaaatagacaacaattTATTCGAAAT
TCCATTACTTATCTCCAACAACACGACTTTGATGGNCAAGTCCTTTCTCT
AAGGTAGTTGCCTCgaaagaaaatagacaacaattTATTCGAAATTCCAT
TACTTATCTCCAACAACACGACTTTGATGGATTGCATTTCGATTGGAGAT
ATCCTACCAAACGTGGTAACTCCGATAAAGATGATCGTAAGCGATTCACT
CTTCTTTGCGAAGAATTCAGGAGAGAACTCATGGTACAAAACCTAGAAAC
CGATCACAAATTAACAATCTCCTCCTCAATTTACCCTGATANGCTCATGG
TACAAAACCTAGAAACTGATCACAAATTAACAATCTCCTCCTCAATTTAC
CCTGATATAAAAGAACTTGATGAAATGTATGAAGTTTTCAAGCTAGGAGA
ACATTTAGAATCTATGTATGTGATGCTACCTTATTTACAAGATCCAGAGG
ATGACGAATGGTACATAAAGACCAAACCTGTTTCAGGCTCTGTGGATGAT
TTGATGTGGATTGTTAGAGAGCTTCTAGCAAGAGAGGTTCCACCAGAAAA
GGTGATCTTAGTATTTAATAGATACTTTCAGAACTCAATCTATCagcctt
ttatttttttcagtacattaGATAGGGCAAAGATGCGAGTCTAAAACTAA
AGGAATATACATCATATATCAGTGCCAAGGTGGAAccttttcctcagtgg
ggatgaaaatttttatcgaaGTCTCAATGTGGATTTAAACTCATTTCAGC
TCAAAAACGGCAATGGAGATGGTttttgagtgcaatttttttcattcaat
tgtcagtggggataaaataatAGGGCaacttttccagtggggatggggac
TCCACCGGGTCTCTGTGATACGAGGTGTAAATATGAACAGGTTTTGATac
caagatttttttctttcaattttagaTAGTGGTTGGCTTGGCATTGTACG
GAACCTCTTTCACCCTGAGAAACAACAGCCAAGTCACAGAGTTGGGATCA
CTAGCCGATGGTGCAGGAGAAGCGGGACCTTTCACAGATGAAAAAGGTTT
TCTCTCACAATTCGAAATCTGCCAACGATTTGGAACATCATCCGAAGCAA
ACTCCAATGTTTCACCATTCCAGCAAAGAGGATCACAATTGGTCACCTTC
GAAAATGAATTTAGTCTACAACATAAAATAAAGACCGTGTTGAAAAGCAA
CGAGCTGCAAGGAGTGGCGTTTTGGTCGATTGATAACGACgattttctta
atatttgcaAGAAAGGAAATTTCCCATTATTAAACACTGTAAGAAACATA
CTAACTACAACCACGACCACTTCTACTACGACGATGACCAGTCCCACTAC
AACAACCACTCCTACTACGACAACGGCCACTCCcacaacaacaaccacca
cCCCTACGACAACGATAACTCCTACAATgacaacgaccacccctactACT
ACGACAACAACCCCTACTACGACAACgacaacgacaacgaccactACGAC
AACAACTACAACTACTCCtactacgacaacgaccactcctactACGACAA
CAATTACAACAACTCCtactacgacaacgaccactcctactacgacaaca
actacaacaactcctactacgacaacgaccactcctactacgacaacgac
caccccgactacaacaacgaccactcctactacgacaacgaccaccccta
ctactacaacgaccacccctactACAACGACGACAAACCCtactacgaca
acgaccacccctacgACAACAACCACTCCtactacgacaacgaccacccc
tactacaacaacaacaaccccTACGACAACGACTACTCCTACTactacaa
cgaccacccctactactacaacgaccactcctactACAACAACGACAACC
CCTACTACGACAACGATAACCCCTACTACGACAACGACAACGACCGctac
gacaacgaccactcctcctacgacaacgaccaccccgactacaacaacga
ccacttctactacgacaacgaccacccctactactacaacgaccaccccc
actacgacaacgaccacccctactattacaacgaccacccctactACGAC
AATGACAACCCCTActactacaacaacaacaaccccTACGACAACGACTA
CTCCTACTactacaacgaccacccctactactacaacgaccacccctaca
acaacaacgacaaccCCTACTACGACAACGATAACCCCTACTACgacaac
gacaacgaccactACGACAACGATCACTCCtactacgacaacgaccaccc
cgactacaacaacgaccacttctactacgacaacgaccacccctaatact
acaacgaccacccctactacgacaacgaccacccctactactacaacgac
cacccctactACGACAACGACAACCCCTActactacaacaacaacaaccc
cTACGACAACCCCTACTactacaacgaccacccctactactacaacgacc
acccctactactacaacgaccacccctacgACAACGACAACGACGATAAA
AGTTACTCAAGCTGTATCACCACAACAATGCTCCACTTTCACTTCAGTTG
TACGAACAAATAGTCCCAGAAGTAAGTTTGGTTTGAATGACTTTCATCTA
TCATAGAGTTTGGTTGAGAATGTGAAAACGTaaacaaactaaaatgaaag
tGATTGTAGAAGGTTTAAACTAGCTAATATTCTGTTTATGAAGTGCTTTT
TTGGTTGTTTATTTTAGTCATAGTGTAGTTCATCTTGATCTTCGCAATAT
AAACTGCTAGATCCCTTCAGTATTTCATAcaactttattttcaaaacatt
aggTATCGAAGGCTCGTTGACGTTCACCTTAAGCGATCAACTACAAATTG
ACGATACAATCGATGTGAAGATTCGTTTTGACGATTTTTACAGCTACCTT
CTTTTTTACTCCAGTTGCTTTGGTCTTACACAGTTCCCTGATGGGTCACG
TGGTGTAAAGTTCACCATCCGTCTACAACAATGGATGATTGATAATGGAT
GTATCGTTCCAGGGGAAAATCTAGTTCTGAAATTCACCAAAAACTGGAGA
TCAGAGACAGAACCGAAGCTTGAATACCTAAATGTGAATGGAACGGATCT
TTGTGGGGCTACCTGCATCTCCATCAACTCCTGGCACAAGGACCAGAATA
TGAAACAATACTGCGCTACAAATTGTCCTTATGGCACCTGTCCATATCCG
CAATGTTCTTGTGATCCCACTTGGACACCGAACTATGATTGCAAATCTAC
AGGGAATTATGAAGGACGAGCGGATATAGACGAATACTGTAGTCTTCATT
GTTATGAGAATTCGGTGTCGTGTCCAAGTGATATGTGCTTGTGCTCGTAA
ACTCGTAAACCAATTTCTCCCTCGTGAACTTTGTGTGAAAAATAATGCAA
GCcactcatttttatttatttggctTAGTATGTAGAAAATTACGCTGATT
GAAAATAAGTTGTCTCCATCTAGTTCATACGTAATACCTTTACAAGTTTA
AATGTACAGCGAGAAATATCTCGATGAAACTGGGAGACGATTGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00062872TCONS_00062872Clytia hemisphaericatranscript
TCONS_00062873TCONS_00062873Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00062872-proteinTCONS_00062872-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:40967..45160 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
MED15mediator of RNA polymerase II transcription subunit 15 isoform a Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48	0.49	0.27	0.39	0.1	0.12	0.47	0.8	0.35	0.73	0.04	0.23	0.23	0.18	0.06	0.08	3.83	4.56	0.29	0.26	11.62	11.79	5.3	6.98	4.16	6.68	0.01	0.02	0.1	0.13