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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062873 ID=TCONS_00062873|Name=TCONS_00062873|organism=Clytia hemisphaerica|type=transcript|length=1023bp
ATGGTGCAGGAGAAGCGGGACCTTTCACAGATGAAAAAGGTTTTCTCTCA
CAATTCGAAATCTGCCAACGATTTGGAACATCATCCGAAGCAAACTCCAA
TGTTTCACCATTCCAGCAAAGAGGATCACAATTGGTCACCTTCGAAAATG
AATTTAGTCTACAACATAAAATAAAGACCGTGTTGAAAAGCAACGAGCTG
CAAGGAGTGGCGTTTTGGTCGATTGATAACGACgattttcttaatatttg
caAGAAAGGAAATTTCCCATTATTAAACACTgTATCGAAGGCTCGTTGAC
GTTCACCTTAAGCGATCAACTACAAATTGACGATACAATCGATGTGAAGA
TTCGTTTTGACGATTTTTACAGCTACCTTCTTTTTTACTCCAGTTGCTTT
GGTCTTACACAGTTCCCTGATGGGTCACGTGGTGTAAAGTTCACCATCCG
TCTACAACAATGGATGATTGATAATGGATGTATCGTTCCAGGGGAAAATC
TAGTTCTGAAATTCACCAAAAACTGGAGATCAGAGACAGAACCGAAGCTT
GAATACCTAAATGTGAATGGAACGGATCTTTGTGGGGCTACCTGCATCTC
CATCAACTCCTGGCACAAGGACCAGAATATGAAACAATACTGCGCTACAA
ATTGTCCTTATGGCACCTGTCCATATCCGCAATGTTCTTGTGATCCCACT
TGGACACCGAACTATGATTGCAAATCTACAGGGAATTATGAAGGACGAGC
GGATATAGACGAATACTGTAGTCTTCATTGTTATGAGAATTCGGTGTCGT
GTCCAAGTGATATGTGCTTGTGCTCGTAAACTCGTAAACCAATTTCTCCC
TCGTGAACTTTGTGTGAAAAATAATGCAAGCcactcatttttatttattt
ggctTAGTATGTAGAAAATTACGCTGATTGAAAATAAGTTGTCTCCATCT
AGTTCATACGTAATACCTTTACAAGTTTAAATGTACAGCGAGAAATATCT
CGATGAAACTGGGAGACGATTGG Run BLAST on NCBI transcript from alignment at scaffold_373:42574..45160+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062873 ID=TCONS_00062873|Name=TCONS_00062873|organism=Clytia hemisphaerica|type=transcript|length=2587bp|location=Sequence derived from alignment at scaffold_373:42574..45160+ (Clytia hemisphaerica)
ATGGTGCAGGAGAAGCGGGACCTTTCACAGATGAAAAAGGTTTTCTCTCA
CAATTCGAAATCTGCCAACGATTTGGAACATCATCCGAAGCAAACTCCAA
TGTTTCACCATTCCAGCAAAGAGGATCACAATTGGTCACCTTCGAAAATG
AATTTAGTCTACAACATAAAATAAAGACCGTGTTGAAAAGCAACGAGCTG
CAAGGAGTGGCGTTTTGGTCGATTGATAACGACgattttcttaatatttg
caAGAAAGGAAATTTCCCATTATTAAACACTGTAAGAAACATACTAACTA
CAACCACGACCACTTCTACTACGACGATGACCAGTCCCACTACAACAACC
ACTCCTACTACGACAACGGCCACTCCcacaacaacaaccaccacCCCTAC
GACAACGATAACTCCTACAATgacaacgaccacccctactACTACGACAA
CAACCCCTACTACGACAACgacaacgacaacgaccactACGACAACAACT
ACAACTACTCCtactacgacaacgaccactcctactACGACAACAATTAC
AACAACTCCtactacgacaacgaccactcctactacgacaacaactacaa
caactcctactacgacaacgaccactcctactacgacaacgaccaccccg
actacaacaacgaccactcctactacgacaacgaccacccctactactac
aacgaccacccctactACAACGACGACAAACCCtactacgacaacgacca
cccctacgACAACAACCACTCCtactacgacaacgaccacccctactaca
acaacaacaaccccTACGACAACGACTACTCCTACTactacaacgaccac
ccctactactacaacgaccactcctactACAACAACGACAACCCCTACTA
CGACAACGATAACCCCTACTACGACAACGACAACGACCGctacgacaacg
accactcctcctacgacaacgaccaccccgactacaacaacgaccacttc
tactacgacaacgaccacccctactactacaacgaccacccccactacga
caacgaccacccctactattacaacgaccacccctactACGACAATGACA
ACCCCTActactacaacaacaacaaccccTACGACAACGACTACTCCTAC
Tactacaacgaccacccctactactacaacgaccacccctacaacaacaa
cgacaaccCCTACTACGACAACGATAACCCCTACTACgacaacgacaacg
accactACGACAACGATCACTCCtactacgacaacgaccaccccgactac
aacaacgaccacttctactacgacaacgaccacccctaatactacaacga
ccacccctactacgacaacgaccacccctactactacaacgaccacccct
actACGACAACGACAACCCCTActactacaacaacaacaaccccTACGAC
AACCCCTACTactacaacgaccacccctactactacaacgaccaccccta
ctactacaacgaccacccctacgACAACGACAACGACGATAAAAGTTACT
CAAGCTGTATCACCACAACAATGCTCCACTTTCACTTCAGTTGTACGAAC
AAATAGTCCCAGAAGTAAGTTTGGTTTGAATGACTTTCATCTATCATAGA
GTTTGGTTGAGAATGTGAAAACGTaaacaaactaaaatgaaagtGATTGT
AGAAGGTTTAAACTAGCTAATATTCTGTTTATGAAGTGCTTTTTTGGTTG
TTTATTTTAGTCATAGTGTAGTTCATCTTGATCTTCGCAATATAAACTGC
TAGATCCCTTCAGTATTTCATAcaactttattttcaaaacattaggTATC
GAAGGCTCGTTGACGTTCACCTTAAGCGATCAACTACAAATTGACGATAC
AATCGATGTGAAGATTCGTTTTGACGATTTTTACAGCTACCTTCTTTTTT
ACTCCAGTTGCTTTGGTCTTACACAGTTCCCTGATGGGTCACGTGGTGTA
AAGTTCACCATCCGTCTACAACAATGGATGATTGATAATGGATGTATCGT
TCCAGGGGAAAATCTAGTTCTGAAATTCACCAAAAACTGGAGATCAGAGA
CAGAACCGAAGCTTGAATACCTAAATGTGAATGGAACGGATCTTTGTGGG
GCTACCTGCATCTCCATCAACTCCTGGCACAAGGACCAGAATATGAAACA
ATACTGCGCTACAAATTGTCCTTATGGCACCTGTCCATATCCGCAATGTT
CTTGTGATCCCACTTGGACACCGAACTATGATTGCAAATCTACAGGGAAT
TATGAAGGACGAGCGGATATAGACGAATACTGTAGTCTTCATTGTTATGA
GAATTCGGTGTCGTGTCCAAGTGATATGTGCTTGTGCTCGTAAACTCGTA
AACCAATTTCTCCCTCGTGAACTTTGTGTGAAAAATAATGCAAGCcactc
atttttatttatttggctTAGTATGTAGAAAATTACGCTGATTGAAAATA
AGTTGTCTCCATCTAGTTCATACGTAATACCTTTACAAGTTTAAATGTAC
AGCGAGAAATATCTCGATGAAACTGGGAGACGATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062873-exon-scaffold_373-1491911889:42574..42854 | TCONS_00062873-exon-scaffold_373-1491911889:42574..42854 | Clytia hemisphaerica | exon |
| TCONS_00062873-exon-scaffold_373-1510915933:42574..42854 | TCONS_00062873-exon-scaffold_373-1510915933:42574..42854 | Clytia hemisphaerica | exon |
| TCONS_00062873-exon-scaffold_373-1575043694:42574..42854 | TCONS_00062873-exon-scaffold_373-1575043694:42574..42854 | Clytia hemisphaerica | exon |
| TCONS_00062873-exon-scaffold_373-1491911889:44419..45160 | TCONS_00062873-exon-scaffold_373-1491911889:44419..45160 | Clytia hemisphaerica | exon |
| TCONS_00062873-exon-scaffold_373-1510915933:44419..45160 | TCONS_00062873-exon-scaffold_373-1510915933:44419..45160 | Clytia hemisphaerica | exon |
| TCONS_00062873-exon-scaffold_373-1575043694:44419..45160 | TCONS_00062873-exon-scaffold_373-1575043694:44419..45160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:42574..45160 + |
Blast
The following BLAST results are available for this feature:
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