TCONS_00062872 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062872
Unique Name	TCONS_00062872
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3589

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_373:40967..45160+
coding sequence from alignment at scaffold_373:40967..45160+

transcript sequence

>TCONS_00062872 ID=TCONS_00062872|Name=TCONS_00062872|organism=Clytia hemisphaerica|type=transcript|length=3589bp
TTTAAATCCACACCGTCATCCAGCAGTGCGGAGTTTGATAAGGGAAAGCT
ACACATTGTGAAGTCTAATCAAATGTTTATGGTATACCAAGATTCATGAG
ACAAAAAATGTTGCCAAAgcttgaaaaattatttcacttgTATGAAGGGA
ATCTTTCGTCTGCTAAGGAAATGTTTCGCTCCTTCGTCAAATTTTAGTTG
ATCAAACTTTAATCTCAAGATGAATTTGTATGTCTTGAAGATACTTCTTA
GCTTCACTATCTTATTCAAGGCATCGTCGAAGGAGTACAGCAGAATTTGT
TTTTATACCAACTGGTCACAGTATCGTACAGGAGTCGGCAAGTTCACCGT
AGACAACATCGATCCATTCCTTTGCACACATGTTGTGTACGCGTTCGCAC
AGATTGGTGATGGTTTTGAGCTTCAACCGACCGATGAGAATGACGAACAT
CAATACAAAGAAATTATCGGACTGAAAATCCAAAATCCTTCACTGAAAGT
TTTGCTTGCAGTTGGTGGTTGGTTGCATGAGTTTGGTAGCACAAGTCCTT
TCTCTAAGGTGGTTGCCTCgaaagaaaatagacaacaattTATTCGAAAT
TCCATTACTTATCTCCAACAACACGACTTTGATGGNCAAGTCCTTTCTCT
AAGGTAGTTGCCTCgaaagaaaatagacaacaattTATTCGAAATTCCAT
TACTTATCTCCAACAACACGACTTTGATGGATTGCATTTCGATTGGAGAT
ATCCTACCAAACGTGGTAACTCCGATAAAGATGATCGTAAGCGATTCACT
CTTCTTTGCGAAGAATTCAGGAGAGAACTCATGGTACAAAACCTAGAAAC
CGATCACAAATTAACAATCTCCTCCTCAATTTACCCTGATANGCTCATGG
TACAAAACCTAGAAACTGATCACAAATTAACAATCTCCTCCTCAATTTAC
CCTGATATAAAAGAACTTGATGAAATGTATGAAGTTTTCAAGCTAGGAGA
ACATTTAGAATCTATGTATGTGATGCTACCTTATTTACAAGATCCAGAGG
ATGACGAATGGTACATAAAGACCAAACCTGTTTCAGGCTCTGTGGATGAT
TTGATGTGGATTGTTAGAGAGCTTCTAGCAAGAGAGGTTCCACCAGAAAA
GaTAGTGGTTGGCTTGGCATTGTACGGAACCTCTTTCACCCTGAGAAACA
ACAGCCAAGTCACAGAGTTGGGATCACTAGCCGATGGTGCAGGAGAAGCG
GGACCTTTCACAGATGAAAAAGGTTTTCTCTCACAATTCGAAATCTGCCA
ACGATTTGGAACATCATCCGAAGCAAACTCCAATGTTTCACCATTCCAGC
AAAGAGGATCACAATTGGTCACCTTCGAAAATGAATTTAGTCTACAACAT
AAAATAAAGACCGTGTTGAAAAGCAACGAGCTGCAAGGAGTGGCGTTTTG
GTCGATTGATAACGACgattttcttaatatttgcaAGAAAGGAAATTTCC
CATTATTAAACACTGTAAGAAACATACTAACTACAACCACGACCACTTCT
ACTACGACGATGACCAGTCCCACTACAACAACCACTCCTACTACGACAAC
GGCCACTCCcacaacaacaaccaccacCCCTACGACAACGATAACTCCTA
CAATgacaacgaccacccctactACTACGACAACAACCCCTACTACGACA
ACgacaacgacaacgaccactACGACAACAACTACAACTACTCCtactac
gacaacgaccactcctactACGACAACAATTACAACAACTCCtactacga
caacgaccactcctactacgacaacaactacaacaactcctactacgaca
acgaccactcctactacgacaacgaccaccccgactacaacaacgaccac
tcctactacgacaacgaccacccctactactacaacgaccacccctactA
CAACGACGACAAACCCtactacgacaacgaccacccctacgACAACAACC
ACTCCtactacgacaacgaccacccctactacaacaacaacaaccccTAC
GACAACGACTACTCCTACTactacaacgaccacccctactactacaacga
ccactcctactACAACAACGACAACCCCTACTACGACAACGATAACCCCT
ACTACGACAACGACAACGACCGctacgacaacgaccactcctcctacgac
aacgaccaccccgactacaacaacgaccacttctactacgacaacgacca
cccctactactacaacgaccacccccactacgacaacgaccacccctact
attacaacgaccacccctactACGACAATGACAACCCCTActactacaac
aacaacaaccccTACGACAACGACTACTCCTACTactacaacgaccaccc
ctactactacaacgaccacccctacaacaacaacgacaaccCCTACTACG
ACAACGATAACCCCTACTACgacaacgacaacgaccactACGACAACGAT
CACTCCtactacgacaacgaccaccccgactacaacaacgaccacttcta
ctacgacaacgaccacccctaatactacaacgaccacccctactacgaca
acgaccacccctactactacaacgaccacccctactACGACAACGACAAC
CCCTActactacaacaacaacaaccccTACGACAACCCCTACTactacaa
cgaccacccctactactacaacgaccacccctactactacaacgaccacc
cctacgACAACGACAACGACGATAAAAGTTACTCAAGCTGTATCACCACA
ACAATGCTCCACTTTCACTTCAGTTGTACGAACAAATAGTCCCAGAAgTA
TCGAAGGCTCGTTGACGTTCACCTTAAGCGATCAACTACAAATTGACGAT
ACAATCGATGTGAAGATTCGTTTTGACGATTTTTACAGCTACCTTCTTTT
TTACTCCAGTTGCTTTGGTCTTACACAGTTCCCTGATGGGTCACGTGGTG
TAAAGTTCACCATCCGTCTACAACAATGGATGATTGATAATGGATGTATC
GTTCCAGGGGAAAATCTAGTTCTGAAATTCACCAAAAACTGGAGATCAGA
GACAGAACCGAAGCTTGAATACCTAAATGTGAATGGAACGGATCTTTGTG
GGGCTACCTGCATCTCCATCAACTCCTGGCACAAGGACCAGAATATGAAA
CAATACTGCGCTACAAATTGTCCTTATGGCACCTGTCCATATCCGCAATG
TTCTTGTGATCCCACTTGGACACCGAACTATGATTGCAAATCTACAGGGA
ATTATGAAGGACGAGCGGATATAGACGAATACTGTAGTCTTCATTGTTAT
GAGAATTCGGTGTCGTGTCCAAGTGATATGTGCTTGTGCTCGTAAACTCG
TAAACCAATTTCTCCCTCGTGAACTTTGTGTGAAAAATAATGCAAGCcac
tcatttttatttatttggctTAGTATGTAGAAAATTACGCTGATTGAAAA
TAAGTTGTCTCCATCTAGTTCATACGTAATACCTTTACAAGTTTAAATGT
ACAGCGAGAAATATCTCGATGAAACTGGGAGACGATTGG

Run BLAST on NCBI

protein sequence of TCONS_00062872-protein

>TCONS_00062872-protein ID=TCONS_00062872-protein|Name=TCONS_00062872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=854bp
MVQNLETDHKLTISSSIYPDXLMVQNLETDHKLTISSSIYPDIKELDEMY
EVFKLGEHLESMYVMLPYLQDPEDDEWYIKTKPVSGSVDDLMWIVRELLA
REVPPEKIVVGLALYGTSFTLRNNSQVTELGSLADGAGEAGPFTDEKGFL
SQFEICQRFGTSSEANSNVSPFQQRGSQLVTFENEFSLQHKIKTVLKSNE
LQGVAFWSIDNDDFLNICKKGNFPLLNTVRNILTTTTTTSTTTMTSPTTT
TTPTTTTATPTTTTTTPTTTITPTMTTTTPTTTTTTPTTTTTTTTTTTTT
TTTTPTTTTTTPTTTTITTTPTTTTTTPTTTTTTTTPTTTTTTPTTTTTT
PTTTTTTPTTTTTTPTTTTTTPTTTTTNPTTTTTTPTTTTTPTTTTTTPT
TTTTTPTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTITPTTTTTTTATT
TTTPPTTTTTPTTTTTTSTTTTTTPTTTTTTPTTTTTTPTITTTTPTTTM
TTPTTTTTTTPTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTITPTTTTT
TTTTTTITPTTTTTTPTTTTTTSTTTTTTPNTTTTTPTTTTTTPTTTTTT
PTTTTTTPTTTTTTTPTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTIKV
TQAVSPQQCSTFTSVVRTNSPRSIEGSLTFTLSDQLQIDDTIDVKIRFDD
FYSYLLFYSSCFGLTQFPDGSRGVKFTIRLQQWMIDNGCIVPGENLVLKF
TKNWRSETEPKLEYLNVNGTDLCGATCISINSWHKDQNMKQYCATNCPYG
TCPYPQCSCDPTWTPNYDCKSTGNYEGRADIDEYCSLHCYENSVSCPSDM
CLCS

Run BLAST on NCBI

transcript from alignment at scaffold_373:40967..45160+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062872 ID=TCONS_00062872|Name=TCONS_00062872|organism=Clytia hemisphaerica|type=transcript|length=4194bp|location=Sequence derived from alignment at scaffold_373:40967..45160+ (Clytia hemisphaerica)
TTTAAATCCACACCGTCATCCAGCAGTGCGGAGTTTGATAAGGGAAAGCT
ACACATTGTGAAGTCTAATCAAATGTTTATGGTATACCAAGATTCATGAG
ACAAAAAATGTTGCCAAAgcttgaaaaattatttcacttgTATGAAGGGA
ATCTTTCGTCTGCTAAGGAAATGTTTCGCTCCTTCGTCAAATTTTAGTTG
ATCAAACTTTAATCTCAAGATGAATTTGTATGTCTTGAAGATACTTCTTA
GCTTCACTATCTTATTCAAGGCATCGTCGAAGGAGTACAGCAGAATTTGT
TTTTATACCAACTGGTCACAGTATCGTACAGGAGTCGGCAAGTTCACCGT
AGACAACATCGATCCATTCCTTTGCACACATGTTGTGTACGCGTTCGCAC
AGATTGGTGATGGTTTTGAGCTTCAACCGACCGATGAGAATGACGAACAT
CAATACAAAGAAATTATCGGACTGAAAATCCAAAATCCTTCACTGAAAGT
TTTGCTTGCAGTTGGTGGTTGGTTGCATGAGTTTGGTAGCACAAGTCCTT
TCTCTAAGGTGGTTGCCTCgaaagaaaatagacaacaattTATTCGAAAT
TCCATTACTTATCTCCAACAACACGACTTTGATGGNCAAGTCCTTTCTCT
AAGGTAGTTGCCTCgaaagaaaatagacaacaattTATTCGAAATTCCAT
TACTTATCTCCAACAACACGACTTTGATGGATTGCATTTCGATTGGAGAT
ATCCTACCAAACGTGGTAACTCCGATAAAGATGATCGTAAGCGATTCACT
CTTCTTTGCGAAGAATTCAGGAGAGAACTCATGGTACAAAACCTAGAAAC
CGATCACAAATTAACAATCTCCTCCTCAATTTACCCTGATANGCTCATGG
TACAAAACCTAGAAACTGATCACAAATTAACAATCTCCTCCTCAATTTAC
CCTGATATAAAAGAACTTGATGAAATGTATGAAGTTTTCAAGCTAGGAGA
ACATTTAGAATCTATGTATGTGATGCTACCTTATTTACAAGATCCAGAGG
ATGACGAATGGTACATAAAGACCAAACCTGTTTCAGGCTCTGTGGATGAT
TTGATGTGGATTGTTAGAGAGCTTCTAGCAAGAGAGGTTCCACCAGAAAA
GGTGATCTTAGTATTTAATAGATACTTTCAGAACTCAATCTATCagcctt
ttatttttttcagtacattaGATAGGGCAAAGATGCGAGTCTAAAACTAA
AGGAATATACATCATATATCAGTGCCAAGGTGGAAccttttcctcagtgg
ggatgaaaatttttatcgaaGTCTCAATGTGGATTTAAACTCATTTCAGC
TCAAAAACGGCAATGGAGATGGTttttgagtgcaatttttttcattcaat
tgtcagtggggataaaataatAGGGCaacttttccagtggggatggggac
TCCACCGGGTCTCTGTGATACGAGGTGTAAATATGAACAGGTTTTGATac
caagatttttttctttcaattttagaTAGTGGTTGGCTTGGCATTGTACG
GAACCTCTTTCACCCTGAGAAACAACAGCCAAGTCACAGAGTTGGGATCA
CTAGCCGATGGTGCAGGAGAAGCGGGACCTTTCACAGATGAAAAAGGTTT
TCTCTCACAATTCGAAATCTGCCAACGATTTGGAACATCATCCGAAGCAA
ACTCCAATGTTTCACCATTCCAGCAAAGAGGATCACAATTGGTCACCTTC
GAAAATGAATTTAGTCTACAACATAAAATAAAGACCGTGTTGAAAAGCAA
CGAGCTGCAAGGAGTGGCGTTTTGGTCGATTGATAACGACgattttctta
atatttgcaAGAAAGGAAATTTCCCATTATTAAACACTGTAAGAAACATA
CTAACTACAACCACGACCACTTCTACTACGACGATGACCAGTCCCACTAC
AACAACCACTCCTACTACGACAACGGCCACTCCcacaacaacaaccacca
cCCCTACGACAACGATAACTCCTACAATgacaacgaccacccctactACT
ACGACAACAACCCCTACTACGACAACgacaacgacaacgaccactACGAC
AACAACTACAACTACTCCtactacgacaacgaccactcctactACGACAA
CAATTACAACAACTCCtactacgacaacgaccactcctactacgacaaca
actacaacaactcctactacgacaacgaccactcctactacgacaacgac
caccccgactacaacaacgaccactcctactacgacaacgaccaccccta
ctactacaacgaccacccctactACAACGACGACAAACCCtactacgaca
acgaccacccctacgACAACAACCACTCCtactacgacaacgaccacccc
tactacaacaacaacaaccccTACGACAACGACTACTCCTACTactacaa
cgaccacccctactactacaacgaccactcctactACAACAACGACAACC
CCTACTACGACAACGATAACCCCTACTACGACAACGACAACGACCGctac
gacaacgaccactcctcctacgacaacgaccaccccgactacaacaacga
ccacttctactacgacaacgaccacccctactactacaacgaccaccccc
actacgacaacgaccacccctactattacaacgaccacccctactACGAC
AATGACAACCCCTActactacaacaacaacaaccccTACGACAACGACTA
CTCCTACTactacaacgaccacccctactactacaacgaccacccctaca
acaacaacgacaaccCCTACTACGACAACGATAACCCCTACTACgacaac
gacaacgaccactACGACAACGATCACTCCtactacgacaacgaccaccc
cgactacaacaacgaccacttctactacgacaacgaccacccctaatact
acaacgaccacccctactacgacaacgaccacccctactactacaacgac
cacccctactACGACAACGACAACCCCTActactacaacaacaacaaccc
cTACGACAACCCCTACTactacaacgaccacccctactactacaacgacc
acccctactactacaacgaccacccctacgACAACGACAACGACGATAAA
AGTTACTCAAGCTGTATCACCACAACAATGCTCCACTTTCACTTCAGTTG
TACGAACAAATAGTCCCAGAAGTAAGTTTGGTTTGAATGACTTTCATCTA
TCATAGAGTTTGGTTGAGAATGTGAAAACGTaaacaaactaaaatgaaag
tGATTGTAGAAGGTTTAAACTAGCTAATATTCTGTTTATGAAGTGCTTTT
TTGGTTGTTTATTTTAGTCATAGTGTAGTTCATCTTGATCTTCGCAATAT
AAACTGCTAGATCCCTTCAGTATTTCATAcaactttattttcaaaacatt
aggTATCGAAGGCTCGTTGACGTTCACCTTAAGCGATCAACTACAAATTG
ACGATACAATCGATGTGAAGATTCGTTTTGACGATTTTTACAGCTACCTT
CTTTTTTACTCCAGTTGCTTTGGTCTTACACAGTTCCCTGATGGGTCACG
TGGTGTAAAGTTCACCATCCGTCTACAACAATGGATGATTGATAATGGAT
GTATCGTTCCAGGGGAAAATCTAGTTCTGAAATTCACCAAAAACTGGAGA
TCAGAGACAGAACCGAAGCTTGAATACCTAAATGTGAATGGAACGGATCT
TTGTGGGGCTACCTGCATCTCCATCAACTCCTGGCACAAGGACCAGAATA
TGAAACAATACTGCGCTACAAATTGTCCTTATGGCACCTGTCCATATCCG
CAATGTTCTTGTGATCCCACTTGGACACCGAACTATGATTGCAAATCTAC
AGGGAATTATGAAGGACGAGCGGATATAGACGAATACTGTAGTCTTCATT
GTTATGAGAATTCGGTGTCGTGTCCAAGTGATATGTGCTTGTGCTCGTAA
ACTCGTAAACCAATTTCTCCCTCGTGAACTTTGTGTGAAAAATAATGCAA
GCcactcatttttatttatttggctTAGTATGTAGAAAATTACGCTGATT
GAAAATAAGTTGTCTCCATCTAGTTCATACGTAATACCTTTACAAGTTTA
AATGTACAGCGAGAAATATCTCGATGAAACTGGGAGACGATTGG

Coding sequence (CDS) from alignment at scaffold_373:40967..45160+

>TCONS_00062872 ID=TCONS_00062872|Name=TCONS_00062872|organism=Clytia hemisphaerica|type=CDS|length=7695bp|location=Sequence derived from alignment at scaffold_373:40967..45160+ (Clytia hemisphaerica)
ATGGTACAAAACCTAGAAACCGATCACAAATTAACAATCTCCTCCTCAAT
TTACCCTGATANGCTCATGGTACAAAACCTAGAAACTGATCACAAATTAA
CAATCTCCTCCTCAATTTACCCTGATATAAAAGAACTTGATGAAATGTAT
GAAGTTTTCAAGCTAGGAGAACATTTAGAATCTATGTATGTGATGCTACC
TTATTTACAAGATCCAGAGGATGACGAATGGTACATAAAGACCAAACCTG
TTTCAGGCTCTGTGGATGATTTGATGTGGATTGTTAGAGAGCTTCTAGCA
AGAGAGGTTCCACCAGAAAAGaTAGTGGTTGGCTTGGCATTGTACGGAAC
CTCTTTCACCCTGAGAAACAACAGCCAAGTCACAGAGTTGGGATCACTAG
CCGATGGTGCAGGAGAAGCGGGACCTTTCACAGATGAAAAAGGTTTTCTC
TCACAATTCGAAATCTGCCAACGATTTGGAACATCATCCGAAGCAAACTC
CAATGTTTCACCATTCCAGCAAAGAGGATCACAATTGGTCACCTTCGAAA
ATGAATTTAGTCTACAACATAAAATAAAGACCGTGTTGAAAAGCAACGAG
CTGCAAGGAGTGGCGTTTTGGTCGATTGATAACGACgattttcttaatat
ttgcaAGAAAGGAAATTTCCCATTATTAAACACTGTAAGAAACATACTAA
CTACAACCACGACCACTTCTACTACGACGATGACCAGTCCCACTACAACA
ACCACTCCTACTACGACAACGGCCACTCCcacaacaacaaccaccacCCC
TACGACAACGATAACTCCTACAATgacaacgaccacccctactACTACGA
CAACAACCCCTACTACGACAACgacaacgacaacgaccactACGACAACA
ACTACAACTACTCCtactacgacaacgaccactcctactACGACAACAAT
TACAACAACTCCtactacgacaacgaccactcctactacgacaacaacta
caacaactcctactacgacaacgaccactcctactacgacaacgaccacc
ccgactacaacaacgaccactcctactacgacaacgaccacccctactac
tacaacgaccacccctactACAACGACGACAAACCCtactacgacaacga
ccacccctacgACAACAACCACTCCtactacgacaacgaccacccctact
acaacaacaacaaccccTACGACAACGACTACTCCTACTactacaacgac
cacccctactactacaacgaccactcctactACAACAACGACAACCCCTA
CTACGACAACGATAACCCCTACTACGACAACGACAACGACCGctacgaca
acgaccactcctcctacgacaacgaccaccccgactacaacaacgaccac
ttctactacgacaacgaccacccctactactacaacgaccacccccacta
cgacaacgaccacccctactattacaacgaccacccctactACGACAATG
ACAACCCCTActactacaacaacaacaaccccTACGACAACGACTACTCC
TACTactacaacgaccacccctactactacaacgaccacccctacaacaa
caacgacaaccCCTACTACGACAACGATAACCCCTACTACgacaacgaca
acgaccactACGACAACGATCACTCCtactacgacaacgaccaccccgac
tacaacaacgaccacttctactacgacaacgaccacccctaatactacaa
cgaccacccctactacgacaacgaccacccctactactacaacgaccacc
cctactACGACAACGACAACCCCTActactacaacaacaacaaccccTAC
GACAACCCCTACTactacaacgaccacccctactactacaacgaccaccc
ctactactacaacgaccacccctacgACAACGACAACGACGATAAAAGTT
ACTCAAGCTGTATCACCACAACAATGCTCCACTTTCACTTCAGTTGTACG
AACAAATAGTCCCAGAAgTATCGAAGGCTCGTTGACGTTCACCTTAAGCG
ATCAACTACAAATTGACGATACAATCGATGTGAAGATTCGTTTTGACGAT
TTTTACAGCTACCTTCTTTTTTACTCCAGTTGCTTTGGTCTTACACAGTT
CCCTGATGGGTCACGTGGTGTAAAGTTCACCATCCGTCTACAACAATGGA
TGATTGATAATGGATGTATCGTTCCAGGGGAAAATCTAGTTCTGAAATTC
ACCAAAAACTGGAGATCAGAGACAGAACCGAAGCTTGAATACCTAAATGT
GAATGGAACGGATCTTTGTGGGGCTACCTGCATCTCCATCAACTCCTGGC
ACAAGGACCAGAATATGAAACAATACTGCGCTACAAATTGTCCTTATGGC
ACCTGTCCATATCCGCAATGTTCTTGTGATCCCACTTGGACACCGAACTA
TGATTGCAAATCTACAGGGAATTATGAAGGACGAGCGGATATAGACGAAT
ACTGTAGTCTTCATTGTTATGAGAATTCGGTGTCGTGTCCAAGTGATATG
TGCTTGTGCTCGTAAATGGTACAAAACCTAGAAACCGATCACAAATTAAC
AATCTCCTCCTCAATTTACCCTGATANGCTCATGGTACAAAACCTAGAAA
CTGATCACAAATTAACAATCTCCTCCTCAATTTACCCTGATATAAAAGAA
CTTGATGAAATGTATGAAGTTTTCAAGCTAGGAGAACATTTAGAATCTAT
GTATGTGATGCTACCTTATTTACAAGATCCAGAGGATGACGAATGGTACA
TAAAGACCAAACCTGTTTCAGGCTCTGTGGATGATTTGATGTGGATTGTT
AGAGAGCTTCTAGCAAGAGAGGTTCCACCAGAAAAGaTAGTGGTTGGCTT
GGCATTGTACGGAACCTCTTTCACCCTGAGAAACAACAGCCAAGTCACAG
AGTTGGGATCACTAGCCGATGGTGCAGGAGAAGCGGGACCTTTCACAGAT
GAAAAAGGTTTTCTCTCACAATTCGAAATCTGCCAACGATTTGGAACATC
ATCCGAAGCAAACTCCAATGTTTCACCATTCCAGCAAAGAGGATCACAAT
TGGTCACCTTCGAAAATGAATTTAGTCTACAACATAAAATAAAGACCGTG
TTGAAAAGCAACGAGCTGCAAGGAGTGGCGTTTTGGTCGATTGATAACGA
CgattttcttaatatttgcaAGAAAGGAAATTTCCCATTATTAAACACTG
TAAGAAACATACTAACTACAACCACGACCACTTCTACTACGACGATGACC
AGTCCCACTACAACAACCACTCCTACTACGACAACGGCCACTCCcacaac
aacaaccaccacCCCTACGACAACGATAACTCCTACAATgacaacgacca
cccctactACTACGACAACAACCCCTACTACGACAACgacaacgacaacg
accactACGACAACAACTACAACTACTCCtactacgacaacgaccactcc
tactACGACAACAATTACAACAACTCCtactacgacaacgaccactccta
ctacgacaacaactacaacaactcctactacgacaacgaccactcctact
acgacaacgaccaccccgactacaacaacgaccactcctactacgacaac
gaccacccctactactacaacgaccacccctactACAACGACGACAAACC
CtactacgacaacgaccacccctacgACAACAACCACTCCtactacgaca
acgaccacccctactacaacaacaacaaccccTACGACAACGACTACTCC
TACTactacaacgaccacccctactactacaacgaccactcctactACAA
CAACGACAACCCCTACTACGACAACGATAACCCCTACTACGACAACGACA
ACGACCGctacgacaacgaccactcctcctacgacaacgaccaccccgac
tacaacaacgaccacttctactacgacaacgaccacccctactactacaa
cgaccacccccactacgacaacgaccacccctactattacaacgaccacc
cctactACGACAATGACAACCCCTActactacaacaacaacaaccccTAC
GACAACGACTACTCCTACTactacaacgaccacccctactactacaacga
ccacccctacaacaacaacgacaaccCCTACTACGACAACGATAACCCCT
ACTACgacaacgacaacgaccactACGACAACGATCACTCCtactacgac
aacgaccaccccgactacaacaacgaccacttctactacgacaacgacca
cccctaatactacaacgaccacccctactacgacaacgaccacccctact
actacaacgaccacccctactACGACAACGACAACCCCTActactacaac
aacaacaaccccTACGACAACCCCTACTactacaacgaccacccctacta
ctacaacgaccacccctactactacaacgaccacccctacgACAACGACA
ACGACGATAAAAGTTACTCAAGCTGTATCACCACAACAATGCTCCACTTT
CACTTCAGTTGTACGAACAAATAGTCCCAGAAgTATCGAAGGCTCGTTGA
CGTTCACCTTAAGCGATCAACTACAAATTGACGATACAATCGATGTGAAG
ATTCGTTTTGACGATTTTTACAGCTACCTTCTTTTTTACTCCAGTTGCTT
TGGTCTTACACAGTTCCCTGATGGGTCACGTGGTGTAAAGTTCACCATCC
GTCTACAACAATGGATGATTGATAATGGATGTATCGTTCCAGGGGAAAAT
CTAGTTCTGAAATTCACCAAAAACTGGAGATCAGAGACAGAACCGAAGCT
TGAATACCTAAATGTGAATGGAACGGATCTTTGTGGGGCTACCTGCATCT
CCATCAACTCCTGGCACAAGGACCAGAATATGAAACAATACTGCGCTACA
AATTGTCCTTATGGCACCTGTCCATATCCGCAATGTTCTTGTGATCCCAC
TTGGACACCGAACTATGATTGCAAATCTACAGGGAATTATGAAGGACGAG
CGGATATAGACGAATACTGTAGTCTTCATTGTTATGAGAATTCGGTGTCG
TGTCCAAGTGATATGTGCTTGTGCTCGTAAATGGTACAAAACCTAGAAAC
CGATCACAAATTAACAATCTCCTCCTCAATTTACCCTGATANGCTCATGG
TACAAAACCTAGAAACTGATCACAAATTAACAATCTCCTCCTCAATTTAC
CCTGATATAAAAGAACTTGATGAAATGTATGAAGTTTTCAAGCTAGGAGA
ACATTTAGAATCTATGTATGTGATGCTACCTTATTTACAAGATCCAGAGG
ATGACGAATGGTACATAAAGACCAAACCTGTTTCAGGCTCTGTGGATGAT
TTGATGTGGATTGTTAGAGAGCTTCTAGCAAGAGAGGTTCCACCAGAAAA
GaTAGTGGTTGGCTTGGCATTGTACGGAACCTCTTTCACCCTGAGAAACA
ACAGCCAAGTCACAGAGTTGGGATCACTAGCCGATGGTGCAGGAGAAGCG
GGACCTTTCACAGATGAAAAAGGTTTTCTCTCACAATTCGAAATCTGCCA
ACGATTTGGAACATCATCCGAAGCAAACTCCAATGTTTCACCATTCCAGC
AAAGAGGATCACAATTGGTCACCTTCGAAAATGAATTTAGTCTACAACAT
AAAATAAAGACCGTGTTGAAAAGCAACGAGCTGCAAGGAGTGGCGTTTTG
GTCGATTGATAACGACgattttcttaatatttgcaAGAAAGGAAATTTCC
CATTATTAAACACTGTAAGAAACATACTAACTACAACCACGACCACTTCT
ACTACGACGATGACCAGTCCCACTACAACAACCACTCCTACTACGACAAC
GGCCACTCCcacaacaacaaccaccacCCCTACGACAACGATAACTCCTA
CAATgacaacgaccacccctactACTACGACAACAACCCCTACTACGACA
ACgacaacgacaacgaccactACGACAACAACTACAACTACTCCtactac
gacaacgaccactcctactACGACAACAATTACAACAACTCCtactacga
caacgaccactcctactacgacaacaactacaacaactcctactacgaca
acgaccactcctactacgacaacgaccaccccgactacaacaacgaccac
tcctactacgacaacgaccacccctactactacaacgaccacccctactA
CAACGACGACAAACCCtactacgacaacgaccacccctacgACAACAACC
ACTCCtactacgacaacgaccacccctactacaacaacaacaaccccTAC
GACAACGACTACTCCTACTactacaacgaccacccctactactacaacga
ccactcctactACAACAACGACAACCCCTACTACGACAACGATAACCCCT
ACTACGACAACGACAACGACCGctacgacaacgaccactcctcctacgac
aacgaccaccccgactacaacaacgaccacttctactacgacaacgacca
cccctactactacaacgaccacccccactacgacaacgaccacccctact
attacaacgaccacccctactACGACAATGACAACCCCTActactacaac
aacaacaaccccTACGACAACGACTACTCCTACTactacaacgaccaccc
ctactactacaacgaccacccctacaacaacaacgacaaccCCTACTACG
ACAACGATAACCCCTACTACgacaacgacaacgaccactACGACAACGAT
CACTCCtactacgacaacgaccaccccgactacaacaacgaccacttcta
ctacgacaacgaccacccctaatactacaacgaccacccctactacgaca
acgaccacccctactactacaacgaccacccctactACGACAACGACAAC
CCCTActactacaacaacaacaaccccTACGACAACCCCTACTactacaa
cgaccacccctactactacaacgaccacccctactactacaacgaccacc
cctacgACAACGACAACGACGATAAAAGTTACTCAAGCTGTATCACCACA
ACAATGCTCCACTTTCACTTCAGTTGTACGAACAAATAGTCCCAGAAgTA
TCGAAGGCTCGTTGACGTTCACCTTAAGCGATCAACTACAAATTGACGAT
ACAATCGATGTGAAGATTCGTTTTGACGATTTTTACAGCTACCTTCTTTT
TTACTCCAGTTGCTTTGGTCTTACACAGTTCCCTGATGGGTCACGTGGTG
TAAAGTTCACCATCCGTCTACAACAATGGATGATTGATAATGGATGTATC
GTTCCAGGGGAAAATCTAGTTCTGAAATTCACCAAAAACTGGAGATCAGA
GACAGAACCGAAGCTTGAATACCTAAATGTGAATGGAACGGATCTTTGTG
GGGCTACCTGCATCTCCATCAACTCCTGGCACAAGGACCAGAATATGAAA
CAATACTGCGCTACAAATTGTCCTTATGGCACCTGTCCATATCCGCAATG
TTCTTGTGATCCCACTTGGACACCGAACTATGATTGCAAATCTACAGGGA
ATTATGAAGGACGAGCGGATATAGACGAATACTGTAGTCTTCATTGTTAT
GAGAATTCGGTGTCGTGTCCAAGTGATATGTGCTTGTGCTCGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039383	XLOC_039383	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00062872-protein	TCONS_00062872-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00062872-exon-scaffold_373-1491911889:40967..42117	TCONS_00062872-exon-scaffold_373-1491911889:40967..42117	Clytia hemisphaerica	exon
TCONS_00062872-exon-scaffold_373-1510915933:40967..42117	TCONS_00062872-exon-scaffold_373-1510915933:40967..42117	Clytia hemisphaerica	exon
TCONS_00062872-exon-scaffold_373-1575043694:40967..42117	TCONS_00062872-exon-scaffold_373-1575043694:40967..42117	Clytia hemisphaerica	exon
TCONS_00062872-exon-scaffold_373-1491911889:42492..44187	TCONS_00062872-exon-scaffold_373-1491911889:42492..44187	Clytia hemisphaerica	exon
TCONS_00062872-exon-scaffold_373-1510915933:42492..44187	TCONS_00062872-exon-scaffold_373-1510915933:42492..44187	Clytia hemisphaerica	exon
TCONS_00062872-exon-scaffold_373-1575043694:42492..44187	TCONS_00062872-exon-scaffold_373-1575043694:42492..44187	Clytia hemisphaerica	exon
TCONS_00062872-exon-scaffold_373-1491911889:44419..45160	TCONS_00062872-exon-scaffold_373-1491911889:44419..45160	Clytia hemisphaerica	exon
TCONS_00062872-exon-scaffold_373-1510915933:44419..45160	TCONS_00062872-exon-scaffold_373-1510915933:44419..45160	Clytia hemisphaerica	exon
TCONS_00062872-exon-scaffold_373-1575043694:44419..45160	TCONS_00062872-exon-scaffold_373-1575043694:44419..45160	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_373	supercontig	scaffold_373:40967..45160 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.479727	0.49015	0.273344	0.182049	0.0990846	0.116639	0.472893	0.693669	0.353804	0.44583	0.0438975	0.0821502	0.230676	0.133915	0.0558382	0.0784875	3.82577	4.04042	0.286184	0.262127	11.6192	11.7879	4.59297	6.98365	4.03734	6.00149	0.0143926	0.0153602	0.104851	0.126311

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001223	Glyco_hydro18_cat
IPR002000	Lysosome-assoc_membr_glycop
IPR017853	Glycoside_hydrolase_SF
IPR029070	Chitinase_insertion

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016020	membrane

Blast

[Close]

BLAST of TCONS_00062872 vs. Swiss-Prot (Human)
Match: CHIA (Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.186e-34
Identity = 93/308 (30.19%), Postives = 152/308 (49.35%), Query Frame = 3

Query:  639 SPFSKVVASKENRQQFIRNSITYLQQHDFDGLHFDWRYPTKRGNSDKDDRKRFTLLCEEFRRELMVQNLETDHKLTISSSIYPDXLMVQNLETDHKLTISSSIYPDIKELDEMYEVFKLGEHLESMYVMLPYLQDP------EDDEWY-IKTKPVSGSVDDLMWIVRELLAREVPPEKIVVGLALYGTSFTLRNNSQVTELGSLADGAGEAGPFTDEKGFLSQFEICQRFGTSSEANSNVS---PFQQRGSQLVTFENEFSLQHKIKTVLKSNELQGVAFWSIDNDDFLN-ICKKGNFPLLNTVRNIL 1529
            +PF+ +V++ ENRQ FI + I +L+Q++FDGL FDW YP  RG S   D+  FT+L +E  RE   Q  +  +K                     +L +++++   I  +   YE+ +L ++L+ ++VM   L         E+   Y   T   S +  ++ +++        P EK++VG   YG +F L N S  T +G+   GAG AGP+  E G  + +EIC      +    +     P+  +G+  V ++N  S   K +  LK N+  G   W+ID DDF    C +G FPL++T++  L
Sbjct:  104 APFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRG-SPPQDKHLFTVLVQEM-REAFEQEAKQINK--------------------PRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSN-TGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQ-WLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKAL 387

HSP 2 Score: 117.857 bits (294), Expect = 1.665e-27
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = 1

Query:  286 YSRICFYTNWSQYRTGVGKFTVDNIDPFLCTHVVYAFAQIGDGFELQPTDENDEHQYKEIIGLKIQNPSLKVLLAVGGWLHEFGSTSPFSKVVASKENRQQFIRNSITYLQQHDFDG 636
            Y   C++TNW+QYR G+G+F  DNIDP LCTH++YAFA   +  E+   + ND   Y+   GLK +N  LK LLA+GGW   FG T+PF+ +V++ ENRQ FI + I +L+Q++FDG
Sbjct:   22 YQLTCYFTNWAQYRPGLGRFMPDNIDPCLCTHLIYAFAGRQNN-EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGGW--NFG-TAPFTAMVSTPENRQTFITSVIKFLRQYEFDG 134

The following BLAST results are available for this feature:

BLAST of TCONS_00062872 vs. Swiss-Prot (Human)

BLAST of TCONS_00062872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHIA	1.186e-34	30.19	Acidic mammalian chitinase OS=Homo sapiens GN=CHIA...	[more]

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TCONS_00062872 (transcript) - C. hemisphaerica