TCONS_00062872-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062872-protein
Unique Name	TCONS_00062872-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	854

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062872-protein ID=TCONS_00062872-protein|Name=TCONS_00062872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=854bp
MVQNLETDHKLTISSSIYPDXLMVQNLETDHKLTISSSIYPDIKELDEMY
EVFKLGEHLESMYVMLPYLQDPEDDEWYIKTKPVSGSVDDLMWIVRELLA
REVPPEKIVVGLALYGTSFTLRNNSQVTELGSLADGAGEAGPFTDEKGFL
SQFEICQRFGTSSEANSNVSPFQQRGSQLVTFENEFSLQHKIKTVLKSNE
LQGVAFWSIDNDDFLNICKKGNFPLLNTVRNILTTTTTTSTTTMTSPTTT
TTPTTTTATPTTTTTTPTTTITPTMTTTTPTTTTTTPTTTTTTTTTTTTT
TTTTPTTTTTTPTTTTITTTPTTTTTTPTTTTTTTTPTTTTTTPTTTTTT
PTTTTTTPTTTTTTPTTTTTTPTTTTTNPTTTTTTPTTTTTPTTTTTTPT
TTTTTPTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTITPTTTTTTTATT
TTTPPTTTTTPTTTTTTSTTTTTTPTTTTTTPTTTTTTPTITTTTPTTTM
TTPTTTTTTTPTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTITPTTTTT
TTTTTTITPTTTTTTPTTTTTTSTTTTTTPNTTTTTPTTTTTTPTTTTTT
PTTTTTTPTTTTTTTPTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTIKV
TQAVSPQQCSTFTSVVRTNSPRSIEGSLTFTLSDQLQIDDTIDVKIRFDD
FYSYLLFYSSCFGLTQFPDGSRGVKFTIRLQQWMIDNGCIVPGENLVLKF
TKNWRSETEPKLEYLNVNGTDLCGATCISINSWHKDQNMKQYCATNCPYG
TCPYPQCSCDPTWTPNYDCKSTGNYEGRADIDEYCSLHCYENSVSCPSDM
CLCS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039383	XLOC_039383	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062872	TCONS_00062872	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001223	Glyco_hydro18_cat
IPR002000	Lysosome-assoc_membr_glycop
IPR017853	Glycoside_hydrolase_SF
IPR029070	Chitinase_insertion

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016020	membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.20.20.80		coord: 20..249 e-value: 1.7E-21 score: 76.5
IPR001223	Glycoside hydrolase family 18, catalytic domain	PFAM	PF00704	Glyco_hydro_18	coord: 30..212 e-value: 6.3E-15 score: 55.6
IPR002000	Lysosome-associated membrane glycoprotein	PROSITE	PS51407	LAMP_3	coord: 341..585 score: 15.043
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 30..123 coord: 191..258
IPR029070	Chitinase insertion domain	SUPERFAMILY	54556	Chitinase insertion domain	coord: 115..165

Blast

[Close]

BLAST of TCONS_00062872-protein vs. Swiss-Prot (Human)
Match: OVGP1 (Oviduct-specific glycoprotein OS=Homo sapiens GN=OVGP1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.668e-17
Identity = 94/365 (25.75%), Postives = 143/365 (39.18%), Query Frame = 0

Query:   96 RELLAREVPPEKIVVGLALYGTSFTLRNNSQVTELGSLADGAGEAGPFTDEKGFLSQFEICQR-FGTSSE-ANSNVSPFQQRGSQLVTFENEFSLQHKIKTVLKSNELQGVAFWSIDNDDFLN-ICKKGNFPLLNTVRNILTTTTTTSTTT----MTSPTTTTTPTTTTATPTTTTTTPTTTITPTM-------------TTTTPTTTTTTPTTTTTTTTTTTTTTTTTPTTTTTTPTTTTI---TTTPTTTTTTPTTTTTTTTPTTTTTTPTTTTTTPTTTTTTP---------TTTTTTPTTTTTTPTTTTTN-PTTTTTTPTTTTTPTTTTTTPT-TTTTTPTTTTTPTTTTTTPTTTTTTP 426
            R+L A   P EK+++G+  YG +F L   S+   L + A G    G +T ++GFL+ FEIC   +G      +    P+  +G + V ++N  S  +K    ++     G   W++D DD     C  G FPL+  + +IL     +ST+     ++S   +++        TT  TT +  + P                T TP  TT TPT  T +    T       T  T   T T++   + TP     TP    + TT   T T+    + TP   T TP         +  + +P  TT TP    T      T  P          T P+   + TP   T P       +   T P
Sbjct:  247 RKLGA---PSEKLIMGIPTYGRTFRLLKASK-NGLQARAIGPASPGKYTKQEGFLAYFEICSFVWGAKKHWIDYQYVPYANKGKEWVGYDNAISFSYK-AWFIRREHFGGAMVWTLDMDDVRGTFCGTGPFPLVYVLNDILVRAEFSSTSLPQFWLSSAVNSSSTDPERLAVTTAWTTDSKILPPGGEAGVTEIHGKCENMTITPRGTTVTPTKETVSLGKHTVALGEK-TEITGAMTMTSVGHQSMTPGEKALTPVGHQSVTTGQKTLTSVGYQSVTPGEKTLTPVGHQSVTPVSHQSVSPGGTTMTPVHFQTETLRQNTVAPRRKAVAREKVTVPSRNISVTPEGQTMPLRGENLTSEVGTHP 605

The following BLAST results are available for this feature:

BLAST of TCONS_00062872-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062872-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OVGP1	4.668e-17	25.75	Oviduct-specific glycoprotein OS=Homo sapiens GN=O...	[more]

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TCONS_00062872-protein (polypeptide) - C. hemisphaerica