XLOC_039161 (gene) - C. hemisphaerica

Overview
NameXLOC_039161
Unique NameXLOC_039161
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_366:9007..15289+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039161 ID=XLOC_039161|Name=XLOC_039161|organism=Clytia hemisphaerica|type=gene|length=6283bp|location=Sequence derived from alignment at scaffold_366:9007..15289+ (Clytia hemisphaerica)
NATGGATGAACCGAAACTGGCCCAAGCTTTCGGGTCGTGCTAGGGCCGCG
CATGGGCCAATTTaggaaaacaaaaacttttaaaacagcTTGTctccatt
tttcaaattattgtgTCTTTCTACCTATCAGGGTAAACTTTTAATACAGC
TTGTctccatttttcaaattattatgTCTTTCTACCTAACAGGGTCAACG
AAAGAAGTTCTGTGTTCACTTACATTTAGTTGCACTTGCCAGGAAGTTGA
AAGAAGGAATAATTGATCAATTAAGCTATGCTAAAGTTAATCCCACTAAG
GACTCAAATCTAACTGAAAAAACACCTAAATCAGAATTGGCTGAGATCTC
AACAGCTGTAACCAATACCATATTGATtcagaaatcaagaaaaattcCAT
TGGATATTCCACCAACGGTCCTAGCAGAAAGCCTTAAACTGGATGAAACA
ATTGAAGTTTATGTCCCTGAAGAAACTGATTGTTCACTCTGTGGAAGCGC
CTTAACAGATCCAATGAATCAAAAGGGTATGGAACATGGATACCTGATAA
CAGAGGTTGTCTCATTCAAAAAGATTAAGATAAAGatcaaaaagtgtaaa
aattcAGATTGTAATGCTACAGTTGTTCTATTTCCATATAACAAAGGTAA
GAAAGTGTTTTATATGTTGTTTCTATTTCATATTTGTCTAAAACCTAAAA
AAGCAAAtcatcttgaaaattaaaatttagaataatttgaaaacaaaaat
tatttgtaCTTAGATTTTATTTGTTCGTTNGCTTTGAGCTTGGTGGTAGC
TATGCAAAAAAATTGGACACTCCATCATCCAAAGCAAACAATAAGACTTC
CACTGCCATCCCGAAATCAGTTACCATTTATGGAACACCAGAGTCTGGAA
CCTTACGCTCTGTTGCAACAAGCAATAGTCATGACAgggaatttttgttt
atttcaggaAACAAAGTANGTCTCATTCAAAAAGATTAAGATAAAGatca
aaaagtgtaaaaattcAGATTGTAATGCTACAGTTGTTCTATTTCCATAT
AACAAAGGTAAGAAAGTGTTTTATATGTTGTTTCTATTTCATATTTGTCT
AAAACCTAAAAAAGCAAAtcatcttgaaaattaaaatttagaataatttg
aaaacaaaaattatttgtaCTTAGATTTTATTTGTTCGTTAGTTTAGACt
atcgtattactttgaataagtgtctggggcgtttatttaattttttcgat
tttaggaggagcgtttattaaattatttgagTCTAACGTGTAATATTTAG
AACAAATGTAGTCTTTATTTAAGTTATATATATCAGGATTTTTAGTGCTA
ATTTCTTTAGTTCATcgactaaaattgcatcgaaaactgctctggttTAT
ATTAAATGACTAAATTCCTTTTCGATCCCAATCAACACTTGTATttgcgt
ttatttgagggggcgtttattaaataaattttcttttaggaggggcgttt
aaaaaaaggGGGCTTTACtcaaagtaatacggtatacTCTTTCGTAACAT
TCTTTAAAGATAatgcttttttttcaaaggacTTTTCAATATCTCCAACA
AAGTTTTGTTAAGTCTAAGCATAATGGTGGAATGGCGTGAATTTTTGAAA
GATGGTACACCAGTCACAAACTTCATCACAAGAAAGCTAAAAGGCCTTCA
ATTGAAATTACCTGTGGTAAAGAGATACTTtttttgaaactagttttctT
GTTAAAGCTACCTTCAAATCAGCTAACATGGATCATTTGAGAGTAAGACT
TTTTGCAAAGAAGATCCACAAAATTATGAGTAAATTTGCCATTTAatcaa
tttttattgttttataaaTATATCCAAAGTGTCATTAAATTATTAGATGA
AAAGATTCAGAGTTGAGAGGTGATATGTTTTACTCCAATGATTCATGTTT
GCAGATTTGACTGTATGATATTACTTTGATAGTAGGAATTGGCTATACTT
GCTTTCTTTCTAAAGTATTTATCTCATTTTTGGAGGTTAAAATCGCAAGT
GTAGATATGTAGGATTATATATAATGTTTAAAATAGatcaaataaagaat
tttcatCAAAGGTTTGAACTACTAATCAAATGAGACATTTTTGACAACTT
TCTGCTCACCAAAatttgtttgcttgattttttcacaataaattgaaatt
tctatttATCTAGGCATCACGCTTGAAAGCATCAGAATTTGACTATCTTA
TCAAAACCATTTATAATGGATACTATGCATTTGAGGCAATGACAGAGAGA
AATTTGGTTGATGCCGTTTGTGGGATATGTGGGATTGCAGGAAAATTGTA
CTTCGGAGATGGCAATGAGAAGAATTGCACCTCAATAAAGGAGGTAGCTA
TGTCACACTTTTTAAtgttaagtttgaaattaaatCACCTTCTAATTCTT
GTGTTTTGAAGTTATTTAAATAGTTGATAAGGGTCGTAATGTTCAAATTG
TGAATAGTCTACCAAACTTTGTACAGATTTCACCCACCATATAAGTAGAT
TCAATAAAGAAGGGGTGCCAAAAATTTTGTGGCCCTAGTGACGTCATAGC
AAcaatttttgcattttccaaGCTAAGTTTTCAACCCCTCAGAAAAATGC
GAAAGTCAAAGTCGCTAAAACCCAAAATCACTTTTACCATTCGAAAGCTT
TCAAAGAACGATATAGAACACATTTAAACAGATATGGTCGATTTCCTAAC
GTAACTCATGTAAAGCCATCACTTTCTGCTtggaatttgacgtcaattga
CCTAAAGTAACATCTTTGAAGTCAAATTGCTCTACTATTTACAATTTGAA
CAATTCAACGCTTATCGACTCTACTAAAAAGGATAACACTGTTGAAAACA
CTTCTCTTTTTTTGTTTAAGGTTAATCTAGATGATAACTTAGAATCAATA
CATAGTTTGACATCAACCGATTATCAGACAAATATGATGGATGTATTGAC
TTCTCACCTTTTGGAAAAGGGGGCATATTCAAAACATGTACCTAGTCTTT
CTTTGAATCTCTCAGACATTCCTCCACTTATTTCCCCATTAATGAGATCG
CATGAGATAAACACGGAAACTGAAAAAAGAAGTACATACCTAGATGATAC
AGATGAGGTTGAAGGTATTTTGTTTGAAGGAATTTGTATTCTAAGCATAA
TTAAAAGAGAATGAGGAGAGAGGACGATTTTGCTTGACGTTTTGAATGAA
AACCTACAAACTATTTTTGAATGGCATATTGCAAGAAGTTATATAGGAAA
AATACCAAAAGATTTAATTTTGgggagaacttattttggcgagtgaacaa
aatatttaattttggcgggaactagtTTTGGggaattttcgcaaattttg
tctaaattcacCGAATTCCCAAAAATTTGTTCCTGCCAAAAAGAGTTCCG
TTAAGGTAAGTTTCTATTTTTAGGAGATGCAATGATGCTTTCAAAGATTT
TAAGAGACAAAAAAACCACAATTGATTCTATTGAAACAATGAGTGCCAAT
GAGCTTAAAGATTTGGCCAAATCATGCAAtatcaaaacatcaaagaatGG
GTCAAAAAAATCACAGGTTAACACTTTAATTCATTTCTGCAGATATGGTA
AACTGCCCTGGCTGATGATTTTTATCAAGATAAAAATAAGAGGTagggca
aaaataaaataagagtGAGGGTATTTTTTCGTCAGAAAACTCTTGCTTAC
CGTGCCCCTTTTTTGAATGCGTTCTTGTATTTTTACAGTACATATGAAAt
agttttagccaatcagattgctcatatttttcataataATAAATAACAAT
AATATCAATTAAAAGCCAAgaacaaaaagattttattaaagaaTGCACAA
AAGTTTTCGTAAGTTTCTCTCACACTATAAAGtgtaaaagaattttttat
cataaaaattACTGACAACAAAATGGAAATTCAAAAGTCTTGTGATCAAA
ATAATGTGATACCAAGTTCAATTTTAGCAAATTTTCTCTTCCCTTAAAAA
TGTAACAAACTAGCATAGCAAATTTTACAGGTTCATTTAATCCAATTTTC
TTTTGGATTcctgaagaaataaataaaacattgaCTATTGTATTTGTAAA
CTgtaaatttgatgaaaataacTTAACTTTTATTTAAAGGCTATGTTGAA
GCTTAACTTAAAACAACTCTATGCAACAATTCTAGTCGGAACATCTGCTT
GTCATCAATTTGTCAAGTCTCCTGGTCATACTGGTGGATTCTATCACCTT
GTTTGTCCTCACGGAGTATGTATATCTACATTAAACTTAAGAGCAGATTC
ACCTAAGAATCAGCATAACTTTCCAGCCGTTGGTGCTAGAGAGCTGAaat
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgNNNNNNNNNNNNNNNNNNNNagtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtg
agtGTGTGATCCACCCAAGATGTGTGACCTTATCTCAAAATTTCAGTAGG
ATTTGAAGACTTTATATTGAGCTCTTCTGATTCTTAGGTGCATCTgctct
taaaattttgatacatttatttgaaaatgttaaaaattttgcCACGCCCA
CTTATATTTCAGGCAATCTGTAGTTTATATTGGAGAACAACCATTCAAAA
TTCTACTCCGTAGGGGTTTTTCGTTGATTTTGGTTTGGTTTTTAAATGAA
CTTTTTTGGGTCAGGATCATAGGTGGCACCTATGTATTTTTATCTTTGTT
ATccacttttcaaaaacaaaggaatttttCAACCATTATAGAttgatcaa
aacaaatattttcatgaaatgCTATAAGATGTGGGCACTAGACAACCTAA
Ttgcattttttattcaaaaaatgttttacaaatgtttttatttaaaataa
aatagattttgaaTGTTTATAAGTTACATAGCAACTGGCAGTGACAGCAA
AATAAAGgaaatcaaatgaaaatcaAGGCCTGTCGGGTTTATGTCGATAA
CATCCTAAATTGCTCCTAACTTGTATTCATTGTTTACTTGTTGAAGAATA
AGAAtggaaactgaaaaaaagataataatGGTGGTTTCACGCAAGAAAAT
ATGACGGGAtcaattttctttactttttttatttctagactACTGTTGCt
tcaaaattcatgatattaaCAGAGTCTGTTCGAGATGCTGCAGATCTGTA
TTTAAGTTTAAAGTTTCCACCGGTGATGTTTGTATGTGATACGCCTTGCA
CTCTGGTCCAGCACATCAATAACAGATCTCCTGAGCATGCTGAACATTTT
TGGGGAGAGAATGATGGTTGCTTTGAGAAaccaaacttggaaaatgatcc
AGAAAAGGTTAACAAGGATGTCTAATCTTTATTATTCATGATAAGAAAAG
AGCCACAGAGTGCTCAAGAAAAATGGAGCAAAAATAATGTATTTGAAATA
ATAACTTAACTTGAAATTGATAGGCAGTATTTCATGCTATGTAATCGTCA
GGCAATATGGTTGCGGTTGTTTTATTTAGTCTGCCAAGTCTGCCATCATG
AATTTCAAATAGAACTTGAACTTTCCTTCAAACACTACAGGGAAACCATT
TACAGCTTAGAAATTTGGATAGCTTCAATAAGATGGATTATCAAATCAAC
AATCATcaacaaaagttaaaattaaaatttaataaaactaaattcataaa
ttttaatCAATTCTATCTTAATTTTCTAGATGATGAATATTCCAATAGTT
GTTCCACCTGAATTCCAAGATGAAGATGAGGAAACAAAAGAGATAGCTCT
TGATAAACCTTTTTGTCATCCATTGACTCAGAGCAGCAGGCGTTTCATAT
GCGGTGACcgttttcatacaaaaacaaatccACATAAGTCTCAACTTTGT
GAATTCCACAACATCGATTTGTGTCTCCAAAGCACTTGCATAAAAACAAG
CTACCCAGAAAGTTTAAATAACaagaaaaacaataaaagaaatcGCTCAG
CTTGCACCCAAAACCTTGCACATCATATTTATTACAATTACCTTATGGAC
TATTATGATAATCTTGAAATTGTACAAGAACAGAAGGCAGCTTTATCTAT
TTATGAAAAAGAAGTAACACGTGATGAATTGTTGCGATTTGTTTTTAATT
GACAAATTCctggaaaaacaatttttgaactaA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00062496TCONS_00062496Clytia hemisphaericatranscript
TCONS_00062497TCONS_00062497Clytia hemisphaericatranscript
TCONS_00062498TCONS_00062498Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00062497-proteinTCONS_00062497-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_366supercontigscaffold_366:9007..15289 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	14.45	11.91	8.12	8.6	4.02	6.71	6.27	3.19	4.14	3.76	0	0.01	0	0	0	0	0.02	0	0	0	4.71	7.77	0	0	0	0.03