TCONS_00062498 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062498
Unique Name	TCONS_00062498
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1772

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_366:9795..15289+

transcript sequence

>TCONS_00062498 ID=TCONS_00062498|Name=TCONS_00062498|organism=Clytia hemisphaerica|type=transcript|length=1772bp
CTTGGTGGTAGCTATGCAAAAAAATTGGACACTCCATCATCCAAAGCAAA
CAATAAGACTTCCACTGCCATCCCGAAATCAGTTACCATTTATGGAACAC
CAGAGTCTGGAACCTTACGCTCTGTTGCAACAAGCAATAGTCATGACAgg
gaatttttgtttatttcaggaAACAAAGTANGTCTCATTCAAAAAGATTA
AGATAAAGatcaaaaagtgtaaaaattcAGATTGTAATGCTACAGTTGTT
CTATTTCCATATAACAAAGgacTTTTCAATATCTCCAACAAAGTTTTGTT
AAGTCTAAGCATAATGGTGGAATGGCGTGAATTTTTGAAAGATGGTACAC
CAGTCACAAACTTCATCACAAGAAAGCTAAAAGGCCTTCAATTGAAATTA
CCTGTGGCATCACGCTTGAAAGCATCAGAATTTGACTATCTTATCAAAAC
CATTTATAATGGATACTATGCATTTGAGGCAATGACAGAGAGAAATTTGG
TTGATGCCGTTTGTGGGATATGTGGGATTGCAGGAAAATTGTACTTCGGA
GATGGCAATGAGAAGAATTGCACCTCAATAAAGGAGGTTAATCTAGATGA
TAACTTAGAATCAATACATAGTTTGACATCAACCGATTATCAGACAAATA
TGATGGATGTATTGACTTCTCACCTTTTGGAAAAGGGGGCATATTCAAAA
CATGTACCTAGTCTTTCTTTGAATCTCTCAGACATTCCTCCACTTATTTC
CCCATTAATGAGATCGCATGAGATAAACACGGAAACTGAAAAAAGAAGTA
CATACCTAGATGATACAGATGAGGTTGAAGGAGATGCAATGATGCTTTCA
AAGATTTTAAGAGACAAAAAAACCACAATTGATTCTATTGAAACAATGAG
TGCCAATGAGCTTAAAGATTTGGCCAAATCATGCAAtatcaaaacatcaa
agaatGGGTCAAAAAAATCACAGGCTATGTTGAAGCTTAACTTAAAACAA
CTCTATGCAACAATTCTAGTCGGAACATCTGCTTGTCATCAATTTGTCAA
GTCTCCTGGTCATACTGGTGGATTCTATCACCTTGTTTGTCCTCACGGAa
ctACTGTTGCttcaaaattcatgatattaaCAGAGTCTGTTCGAGATGCT
GCAGATCTGTATTTAAGTTTAAAGTTTCCACCGGTGATGTTTGTATGTGA
TACGCCTTGCACTCTGGTCCAGCACATCAATAACAGATCTCCTGAGCATG
CTGAACATTTTTGGGGAGAGAATGATGGTTGCTTTGAGAAaccaaacttg
gaaaatgatccAGAAAAGATGATGAATATTCCAATAGTTGTTCCACCTGA
ATTCCAAGATGAAGATGAGGAAACAAAAGAGATAGCTCTTGATAAACCTT
TTTGTCATCCATTGACTCAGAGCAGCAGGCGTTTCATATGCGGTGACcgt
tttcatacaaaaacaaatccACATAAGTCTCAACTTTGTGAATTCCACAA
CATCGATTTGTGTCTCCAAAGCACTTGCATAAAAACAAGCTACCCAGAAA
GTTTAAATAACaagaaaaacaataaaagaaatcGCTCAGCTTGCACCCAA
AACCTTGCACATCATATTTATTACAATTACCTTATGGACTATTATGATAA
TCTTGAAATTGTACAAGAACAGAAGGCAGCTTTATCTATTTATGAAAAAG
AAGTAACACGTGATGAATTGTTGCGATTTGTTTTTAATTGACAAATTCct
ggaaaaacaatttttgaactaA

Run BLAST on NCBI

transcript from alignment at scaffold_366:9795..15289+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062498 ID=TCONS_00062498|Name=TCONS_00062498|organism=Clytia hemisphaerica|type=transcript|length=5495bp|location=Sequence derived from alignment at scaffold_366:9795..15289+ (Clytia hemisphaerica)
CTTGGTGGTAGCTATGCAAAAAAATTGGACACTCCATCATCCAAAGCAAA
CAATAAGACTTCCACTGCCATCCCGAAATCAGTTACCATTTATGGAACAC
CAGAGTCTGGAACCTTACGCTCTGTTGCAACAAGCAATAGTCATGACAgg
gaatttttgtttatttcaggaAACAAAGTANGTCTCATTCAAAAAGATTA
AGATAAAGatcaaaaagtgtaaaaattcAGATTGTAATGCTACAGTTGTT
CTATTTCCATATAACAAAGGTAAGAAAGTGTTTTATATGTTGTTTCTATT
TCATATTTGTCTAAAACCTAAAAAAGCAAAtcatcttgaaaattaaaatt
tagaataatttgaaaacaaaaattatttgtaCTTAGATTTTATTTGTTCG
TTAGTTTAGACtatcgtattactttgaataagtgtctggggcgtttattt
aattttttcgattttaggaggagcgtttattaaattatttgagTCTAACG
TGTAATATTTAGAACAAATGTAGTCTTTATTTAAGTTATATATATCAGGA
TTTTTAGTGCTAATTTCTTTAGTTCATcgactaaaattgcatcgaaaact
gctctggttTATATTAAATGACTAAATTCCTTTTCGATCCCAATCAACAC
TTGTATttgcgtttatttgagggggcgtttattaaataaattttctttta
ggaggggcgtttaaaaaaaggGGGCTTTACtcaaagtaatacggtatacT
CTTTCGTAACATTCTTTAAAGATAatgcttttttttcaaaggacTTTTCA
ATATCTCCAACAAAGTTTTGTTAAGTCTAAGCATAATGGTGGAATGGCGT
GAATTTTTGAAAGATGGTACACCAGTCACAAACTTCATCACAAGAAAGCT
AAAAGGCCTTCAATTGAAATTACCTGTGGTAAAGAGATACTTtttttgaa
actagttttctTGTTAAAGCTACCTTCAAATCAGCTAACATGGATCATTT
GAGAGTAAGACTTTTTGCAAAGAAGATCCACAAAATTATGAGTAAATTTG
CCATTTAatcaatttttattgttttataaaTATATCCAAAGTGTCATTAA
ATTATTAGATGAAAAGATTCAGAGTTGAGAGGTGATATGTTTTACTCCAA
TGATTCATGTTTGCAGATTTGACTGTATGATATTACTTTGATAGTAGGAA
TTGGCTATACTTGCTTTCTTTCTAAAGTATTTATCTCATTTTTGGAGGTT
AAAATCGCAAGTGTAGATATGTAGGATTATATATAATGTTTAAAATAGat
caaataaagaattttcatCAAAGGTTTGAACTACTAATCAAATGAGACAT
TTTTGACAACTTTCTGCTCACCAAAatttgtttgcttgattttttcacaa
taaattgaaatttctatttATCTAGGCATCACGCTTGAAAGCATCAGAAT
TTGACTATCTTATCAAAACCATTTATAATGGATACTATGCATTTGAGGCA
ATGACAGAGAGAAATTTGGTTGATGCCGTTTGTGGGATATGTGGGATTGC
AGGAAAATTGTACTTCGGAGATGGCAATGAGAAGAATTGCACCTCAATAA
AGGAGGTAGCTATGTCACACTTTTTAAtgttaagtttgaaattaaatCAC
CTTCTAATTCTTGTGTTTTGAAGTTATTTAAATAGTTGATAAGGGTCGTA
ATGTTCAAATTGTGAATAGTCTACCAAACTTTGTACAGATTTCACCCACC
ATATAAGTAGATTCAATAAAGAAGGGGTGCCAAAAATTTTGTGGCCCTAG
TGACGTCATAGCAAcaatttttgcattttccaaGCTAAGTTTTCAACCCC
TCAGAAAAATGCGAAAGTCAAAGTCGCTAAAACCCAAAATCACTTTTACC
ATTCGAAAGCTTTCAAAGAACGATATAGAACACATTTAAACAGATATGGT
CGATTTCCTAACGTAACTCATGTAAAGCCATCACTTTCTGCTtggaattt
gacgtcaattgaCCTAAAGTAACATCTTTGAAGTCAAATTGCTCTACTAT
TTACAATTTGAACAATTCAACGCTTATCGACTCTACTAAAAAGGATAACA
CTGTTGAAAACACTTCTCTTTTTTTGTTTAAGGTTAATCTAGATGATAAC
TTAGAATCAATACATAGTTTGACATCAACCGATTATCAGACAAATATGAT
GGATGTATTGACTTCTCACCTTTTGGAAAAGGGGGCATATTCAAAACATG
TACCTAGTCTTTCTTTGAATCTCTCAGACATTCCTCCACTTATTTCCCCA
TTAATGAGATCGCATGAGATAAACACGGAAACTGAAAAAAGAAGTACATA
CCTAGATGATACAGATGAGGTTGAAGGTATTTTGTTTGAAGGAATTTGTA
TTCTAAGCATAATTAAAAGAGAATGAGGAGAGAGGACGATTTTGCTTGAC
GTTTTGAATGAAAACCTACAAACTATTTTTGAATGGCATATTGCAAGAAG
TTATATAGGAAAAATACCAAAAGATTTAATTTTGgggagaacttattttg
gcgagtgaacaaaatatttaattttggcgggaactagtTTTGGggaattt
tcgcaaattttgtctaaattcacCGAATTCCCAAAAATTTGTTCCTGCCA
AAAAGAGTTCCGTTAAGGTAAGTTTCTATTTTTAGGAGATGCAATGATGC
TTTCAAAGATTTTAAGAGACAAAAAAACCACAATTGATTCTATTGAAACA
ATGAGTGCCAATGAGCTTAAAGATTTGGCCAAATCATGCAAtatcaaaac
atcaaagaatGGGTCAAAAAAATCACAGGTTAACACTTTAATTCATTTCT
GCAGATATGGTAAACTGCCCTGGCTGATGATTTTTATCAAGATAAAAATA
AGAGGTagggcaaaaataaaataagagtGAGGGTATTTTTTCGTCAGAAA
ACTCTTGCTTACCGTGCCCCTTTTTTGAATGCGTTCTTGTATTTTTACAG
TACATATGAAAtagttttagccaatcagattgctcatatttttcataata
ATAAATAACAATAATATCAATTAAAAGCCAAgaacaaaaagattttatta
aagaaTGCACAAAAGTTTTCGTAAGTTTCTCTCACACTATAAAGtgtaaa
agaattttttatcataaaaattACTGACAACAAAATGGAAATTCAAAAGT
CTTGTGATCAAAATAATGTGATACCAAGTTCAATTTTAGCAAATTTTCTC
TTCCCTTAAAAATGTAACAAACTAGCATAGCAAATTTTACAGGTTCATTT
AATCCAATTTTCTTTTGGATTcctgaagaaataaataaaacattgaCTAT
TGTATTTGTAAACTgtaaatttgatgaaaataacTTAACTTTTATTTAAA
GGCTATGTTGAAGCTTAACTTAAAACAACTCTATGCAACAATTCTAGTCG
GAACATCTGCTTGTCATCAATTTGTCAAGTCTCCTGGTCATACTGGTGGA
TTCTATCACCTTGTTTGTCCTCACGGAGTATGTATATCTACATTAAACTT
AAGAGCAGATTCACCTAAGAATCAGCATAACTTTCCAGCCGTTGGTGCTA
GAGAGCTGAaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgNNNNNNNNNNNNNNNNNNNNagtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtg
tgtgtgtgtgtgagtGTGTGATCCACCCAAGATGTGTGACCTTATCTCAA
AATTTCAGTAGGATTTGAAGACTTTATATTGAGCTCTTCTGATTCTTAGG
TGCATCTgctcttaaaattttgatacatttatttgaaaatgttaaaaatt
ttgcCACGCCCACTTATATTTCAGGCAATCTGTAGTTTATATTGGAGAAC
AACCATTCAAAATTCTACTCCGTAGGGGTTTTTCGTTGATTTTGGTTTGG
TTTTTAAATGAACTTTTTTGGGTCAGGATCATAGGTGGCACCTATGTATT
TTTATCTTTGTTATccacttttcaaaaacaaaggaatttttCAACCATTA
TAGAttgatcaaaacaaatattttcatgaaatgCTATAAGATGTGGGCAC
TAGACAACCTAATtgcattttttattcaaaaaatgttttacaaatgtttt
tatttaaaataaaatagattttgaaTGTTTATAAGTTACATAGCAACTGG
CAGTGACAGCAAAATAAAGgaaatcaaatgaaaatcaAGGCCTGTCGGGT
TTATGTCGATAACATCCTAAATTGCTCCTAACTTGTATTCATTGTTTACT
TGTTGAAGAATAAGAAtggaaactgaaaaaaagataataatGGTGGTTTC
ACGCAAGAAAATATGACGGGAtcaattttctttactttttttatttctag
actACTGTTGCttcaaaattcatgatattaaCAGAGTCTGTTCGAGATGC
TGCAGATCTGTATTTAAGTTTAAAGTTTCCACCGGTGATGTTTGTATGTG
ATACGCCTTGCACTCTGGTCCAGCACATCAATAACAGATCTCCTGAGCAT
GCTGAACATTTTTGGGGAGAGAATGATGGTTGCTTTGAGAAaccaaactt
ggaaaatgatccAGAAAAGGTTAACAAGGATGTCTAATCTTTATTATTCA
TGATAAGAAAAGAGCCACAGAGTGCTCAAGAAAAATGGAGCAAAAATAAT
GTATTTGAAATAATAACTTAACTTGAAATTGATAGGCAGTATTTCATGCT
ATGTAATCGTCAGGCAATATGGTTGCGGTTGTTTTATTTAGTCTGCCAAG
TCTGCCATCATGAATTTCAAATAGAACTTGAACTTTCCTTCAAACACTAC
AGGGAAACCATTTACAGCTTAGAAATTTGGATAGCTTCAATAAGATGGAT
TATCAAATCAACAATCATcaacaaaagttaaaattaaaatttaataaaac
taaattcataaattttaatCAATTCTATCTTAATTTTCTAGATGATGAAT
ATTCCAATAGTTGTTCCACCTGAATTCCAAGATGAAGATGAGGAAACAAA
AGAGATAGCTCTTGATAAACCTTTTTGTCATCCATTGACTCAGAGCAGCA
GGCGTTTCATATGCGGTGACcgttttcatacaaaaacaaatccACATAAG
TCTCAACTTTGTGAATTCCACAACATCGATTTGTGTCTCCAAAGCACTTG
CATAAAAACAAGCTACCCAGAAAGTTTAAATAACaagaaaaacaataaaa
gaaatcGCTCAGCTTGCACCCAAAACCTTGCACATCATATTTATTACAAT
TACCTTATGGACTATTATGATAATCTTGAAATTGTACAAGAACAGAAGGC
AGCTTTATCTATTTATGAAAAAGAAGTAACACGTGATGAATTGTTGCGAT
TTGTTTTTAATTGACAAATTCctggaaaaacaatttttgaactaA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039161	XLOC_039161	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_366	supercontig	scaffold_366:9795..15289 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.18705	1.84337	1.91974	1.6408	1.2839	1.60368	2.93246	1.45302	1.42854	0	0	0.0138318	0	0	0	0	0.0219462	0	0	0	0	0.560117	0	0	0	0.0256682

Blast

[Close]

BLAST of TCONS_00062498 vs. Swiss-Prot (Human)
Match: HMGX3 (HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.119e-41
Identity = 120/420 (28.57%), Postives = 190/420 (45.24%), Query Frame = 2

Query:  269 GLFNISNKVLLSLSIMVEWREFLKDGTPVTNFITRKLKGLQLKLPVASRLKASEFDYLIKTIYNGYYAFEAMTERNLVDAVCGICGIAGKLYFGDGNEKNCTSIKEVNLD-DNLESIHSLTSTDYQTNMMDVLTSHLLEKGAYSKHVPSLSLNLSDIPPLISPLMRSHEI-NTETEKRSTYLDDTDEVEGDAMMLSKILRDKKTTIDSIETMSANELKDLAKSCNIKTSKNGSKKSQAMLKLNLKQLYATILVGTSACHQFVKSPGH-TGGFYHLVCPHGTTVASKFMILTESVRDAADLYLSLKFPPVMFVCDTPCTLVQHINNRSPEHAEHFWGENDGCFEKPNLENDPEKMMNIPIVVP-PEFQDEDEETKEIALDKPFCHPLTQSSRRFICGDRFHTKTNPHKSQL-CEFHNIDLC 1513
            GLFN+ NK+L+SL ++   R  +K G      I   LK +Q +      L + E   L + + NGY+AFE +T R+  D +CGICG+A K+     +E+N  ++K V          + +   D+   M     + ++E+ A+   +P    + S I P   PLMR   + NTE +K      D   V G    L ++L++    +D I + S  +L+ L + C I     G++ S+  L  +L  LY ++  G  A    ++ P H TGG  + VCPH     SK+++  ES RD  DL  S +  P ++V D   ++    +   PE     WG N GCF  P            P+ V  PE  D+         +    HP+T+++ R I     H    P+        H++ LC
Sbjct: 1051 GLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSINVVLKSVQEQ--TEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEENVLALKSVEFTWPEFLGSNEVNVEDFWATM----ETEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNL----DVQPVPGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPF---GAEDSKDQLCFSLLALYESVQNGARA----IRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMATSVALCADLCYPELTNQMWGRNQGCFSSPT---------EPPVSVSCPELLDQHYTVDMTETEHSIQHPVTKTATRRI----VHAGLQPNPGDPSAGHHSLALC 1440

The following BLAST results are available for this feature:

BLAST of TCONS_00062498 vs. Swiss-Prot (Human)

BLAST of TCONS_00062498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMGX3	7.119e-41	28.57	HMG domain-containing protein 3 OS=Homo sapiens GN...	[more]

You are here

TCONS_00062498 (transcript) - C. hemisphaerica