XLOC_038106 (gene) - C. hemisphaerica

Overview
NameXLOC_038106
Unique NameXLOC_038106
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_345:181920..190704+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038106 ID=XLOC_038106|Name=XLOC_038106|organism=Clytia hemisphaerica|type=gene|length=8785bp|location=Sequence derived from alignment at scaffold_345:181920..190704+ (Clytia hemisphaerica)
GCTTCATCGATCCTTCAAGGAAATAAGTCTCAATAAGGATAAAATGCATG
TGCTGCTCTACTGTACTGATTGAAGATAGTTGGGACTTAGATTCTATGAA
CATTTGTAAATATAATTTCAGAAATATGAAAATTACATAAAATGCACGAC
AAAGATCTGATTCTTCAAAAGTATGAGGATGCTCAACTTCAttgtttcaa
aacaaatgatttaGTAATTGAGGAGCAAATCAAACTACCTGGTCATTCAT
GGAACATATCAGCTGTTCAATTCAACTCAAGTGGACTTCATCTTGCATCA
GCTGGCTGGGATAAAACTATCTTAGTATGGGATTTAAAGACTTTGGAGGA
TCCAAAAGTGTTAGAGAATGGTCATCGAGAAACCATTACTTGTTTATCTT
GGTTTCCACAAGTAGATTCAATGATGGTGTCTGGATCATCTGATCACTCT
TTGGTTATTTGGAATGTTGATAACAATGAAGCTATGGCGAAGTAAGTTAT
CAACAGCTGTATTTTCACCCTGTTTAGTTTGAATTTAAGGTTATCTTGCA
TTGTTTATGTGAAACTTATCTAAAGATTAACCAAGAATCGTAAAATAACT
ATTATATTGAGAGCTCATCTATTGATGGATCTTAGGATACTAGggttttt
tacgatttttttacTTAGAATTGTattttattgattattttttagTTTGT
CTTAGCCATGTGGGGTCTACCAATGTTATGACAAAGTCTCGCTTTATTAT
AATGGTCTTGGACTTAGACTTTTCAGATTTGatgtatattaaaaaaaaaa
acaataagatTTCTAAATATTTTAGGTTGGTTGAACATGAGTCGTGGGTG
TTATCGATTTCATTTGACTCTGTTGGTAAACAAATGGCCTCGTCTTCATG
GAaaggtgacgtcatcatttgggaTATGATGACTATCAACCCTTTTGTAC
AACTAAAAGGACATGCAGAAGGTAGGGCATTGTATCCAGGCTACTTGTTG
AGTTAAGCTTTGTTTACTTCCACTCATTTTTGACCCAAAtagaatcaaaa
aaataatctgcAAACTAATCAGGGAattacacactattgtaccattttat
ttggtttatcctactctcctccaagtattatcccaacaaaaaaataatgc
ttagctaaaagccgtggcctctaatttaggctatttttctccatAAAATT
GTATCCAGACAATCAAATCAACAGCGCATCATGGCTTCGCtaattggcaa
gtttagaaaaaaataaatttataagaacttggaaataatgacttctaaat
gtttatctcctttagctccaatttgaactttttagtcgaggatgagtggg
cgggggggtggggttggttctttaggcaagaaagtgcatgtttAATCACT
TAGAaaagctaaacttccagctggtttatttatttgttaagattatttct
catactcgctctgcaatagaattattactttgctttctgatctgttctga
ttagtagtttgtgggcaacgttctaacacaactaactcaacaaactcatc
tttcacatcttttaatctcttttaagccggagcttccagcgcagctggtt
tattcactttcgtttactgttgaaaacataacaaagttttagctataCTT
TTAAACCGCGTATAACTGTcggttaagccaatcagctttcgggctgacat
cagcatgtatttcagagtataccatgaAAGTGCCACCAAatccgacccct
actataagtatagcgctatagcctttaagtgatgagattttagctccccc
caattacataggtccccccaaaaaagtggtgtactcccagccccctcctt
tttgggaaaaatttagggTGTACCCCAACTAGaaggggggctgacgctat
gtttAGGGTAGTCTGGCTTTCAAGTGTAATTTGAGTATATAAATAAGTAA
GACTAAGAGGGTGtcctttttattgttaaaactttattaaaaaTGATTAA
TGAAGACTTGACAGATATTATTTCTTTACTTTTGACAgaatgacatgaca
tgacaatGAAACTATTACACTGTGACATTTCAACGTTTTAACAAGATATG
TCTGGTATTGTGCTTTATGTGTTGTGTAAGAGAAATTCTTTCATCTACCA
CTTACAATGGATGACCTTTATCACTCCTAGTAATGAGATCTTTTTTTCTC
AGAGCGCtcgaattttgaatatttcggTGTTCTTGTCGTAAAAGGTTTTC
AGCTTTACCCTTTTTTCGAATGTCGTGTTGACTTTCCTATTCTTTCTATA
ATATAAACCTATTTTCAGTCACAGTGACATAATTTATGCAGTATAATTCG
AATCtccataatttcaaaaaatgttgcgtTCGAGATATAAGAAGATTCAG
TTGCACTCACAGAGTGTAAAAGTTTATCCCCTTttgcaatagaccttatc
ggagtttttgatttttctaaaaaagcgatgcattgtgggattgtttcaag
tgtattacaatagaattcccttgaGGAATTCATAAGAGATTTcgattgta
atacactcgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaa
actccgataaggtctaaaCAGTGATAATTACACTTTTCCTCTTCCATTAG
TTCTTGCTTATTTTCTACTGGTCTGAATTCGTCGCCTAGCACGCTAGACT
AGACATATTTATAATGTTTGTTAATTGTTCTCACAACATTACAGTCAAGT
TTTTCTCCTGTTTTCCCTTTTCTGCAGTAAACTTACAGAATCCAAAATAA
CCACAATTACGGCCTCCCCAACTGTGTGTCTATCTACCTTTTAAATTGGT
CAAACCTAGGTTTTTCGTCGGATTTTACACACCAAATTAGCACATATATC
CTGAAATTTTGGTGAGTTATGCCGAATTTAGAGAAGAAGAAGCCTCTTTA
TATACTTCGCTGAGACGGGAATCCCTTTGAGATGAAAGAACTTTTATCAC
TGCTTCTGTTATTATTTTCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTttgcaatagacctta
tcggagtttttgatttttctaaaaaagcgatgcattttgggattgtttca
agtgtattacaatagaattcccttgaGGAATTCATAAGAGATTTcgattg
taatacactcgaaacaatcccacaatgcatcgcttttttagaaaaatcaa
aaactccgataaggtctaaaCAGTGATAATTACACTTTTCCTCTTCCATT
AGTTCTTGCTTATTTTCTACTGGTCTGAATTCGTCGCCTAGCACGCTAGA
CTAGACATATTTATAATGTTTGTTAATTGTTCTCACAACATTACAGTCAA
GTTTTTCTCCTGTTTTCCCTTTTCTGCAGTAAACTTACAGAATCCAAAAT
AACCACAATTACGGCCTCCCCAACTGTGTGTCTATCTACCTTTTAAATTG
GTCAAACCTAGGTTTTTCGTCGGATTTTACACACCAAATTAGCACATATA
TCCTGAAATTTTGGTGAGTTATGCCGAATTTAGAGAAGAAGAAGCCTCTT
TATATACTTCGCTGAGACGGGAATCCCTTTGAGATGAAAGAACTTTAATC
ACTGCTTCTGTTATTATTTTCAGGAGTATGGTGTTGTGCATTCAATGACT
GCAATCCCAACTTATTATGTAGTGCAAGTGAAGATACGTCATTGAGATTG
TGGGACTTGCGTAACGATAACCAGTGGCATTCAGATGTTATTTTATCAGG
CCTGCATACGGATGGTATTAGATGTTGTTCGTGGTCACCTTGTGGGAATT
ATATCGCTGCTGGATCACGTGACTCAAAGGTACCAAACATTTatacactc
ctgtctcacagccccggtgaaacctttttcccacagcgggatgaaaaaat
ttctattgagaTCTCAATGGGGAGGAAAACTCAattgttttggagtgcaa
tttctaaacaatgaatttcgaatggggatgaaatcaaagtcattttctTA
GGGTatttctagggtatttttcccaccggggacgaaatttttgccaaatt
ttccagcgggtctgtgacaaagGGGTGTATTTATCCTGATATAAGgtata
gaaaatgaataaattACTTTTAATGTGTATTAAGCCATTTTTAACGCCCT
GGACATGTATGAAGTGTATATTAGTAAGCTAGTTTTCTCTTCACCTCCAT
TTGTCCAAGGTAGATAaactttttcctattttttgtaGTGAGTTCCTTTG
CTAATAATTGAGGGACAAGACTAATTTTTTTACGTAGAGTTTGGGAGTCT
TTCCTCCGTAAAAAATGGTATCATCATCAtatagttttatttttcttgca
aATCAACATATacatacatttttttataagcataacatttataagtatat
gcaggctcagtttttggtacccaAACAATggctaaaaaaaacatttaatg
agAAATAATAGGGAACTAAATTGCAGGTATGAAGGCAACCTGAAGCCATG
CTTGAAGCTCTAAATCAACAATTGCCACCAATTTACTTTCGCTTATCTTG
TATCAGGTATCAATATGGGATATCCGTTCTAACAAAGCTATCAACTGTCT
GTATGGACATTCAAATATTGTGATGGGTACTTCCTATCTCTCTTCATCTC
TTTTGTTCACTGTCGGTGATACAAGATGCTGCTTATGGAATACTTTTGAT
CCGCAAGGGAAACCTATTTGTTCCTTACAACAACATACGTGGAGCTATGA
GGTAGGTTTATATATTGTTCATTTGTTTTAGATTAaaagattgggctttt
ccagaaaaatttgaacatgggggtggaggatataaggTGTTTTGTGAAAA
TACCTTATGATCCACCGGACAAAAGATCTTATCCCCCCCGGACAATCAAA
ATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgtaaa
aattcggaattccagaggggtatgatcctaaaattgcctggaattccaag
ggggtaggtcacaaaaggttggacctcctcaacagggggtgctcggcttt
tttctggaaaagcccattaatCATtcgcctaaatttatgcttttcATCAT
GAAGAGTTCTGTAGAATCAATATGAAGTTCCTTTTTACTATACTTACCTG
TATCAAACACTTTTCTCTGCTGAAAAAAACGATGCGTTCGGTCAGACACT
ACTCCGTGTCTAAGCTTTTTTTCACAAGTCTCTTGCTGCCTCTGTGGTGT
AGCGCATAGGCAACGAGACACAGAATTTCTCTAACCGATACCATCGAGAT
GTTGAAGCAGGCCGACACAAGACAATATCAAGTATGTAAGAATCGTCCAT
GGctagtttggtacaggctatgattatacatacttttgagatttttcagc
CTTTTATTCCTTATCATTCTTCTTCCATTTTAGGTGGAATGTTTGGCACT
TTCACCTGATAGAACGCTCTTAGCAACTGGTAGTGTGGATAAACAAATCA
CTCTTTCTACAGTAGAAGTCTCTGATGAGTTTAGTCATGGTTTACACGAT
GACTCTAATGAACTCCCATACGCTAAATTACCTGCTAAAACTGCTACGTC
CATGCAAGAAGTCAAAAGTAAgacatttaaaatttgaaacttgAAGGTAT
TTATCGTATTAATATCCTCATTTCAATTTGATCATTAGGCTTTTTGATTA
AACCGGTCgtctttaaaattcaaatccTAGAAAGCTCTCTTCGAGATCTT
CAGGTTGTCAGATTTTTAGATACGGTTTGCTGTGAAATCTGCAAAATCGA
CAAGTATTTTAGAATTTTGGCATATACTCAAGGTATGAAATTTGTTTCTA
GAATGAAAATGTACTAAATAAAACCTTATCAAACCCATCATTTCAGATGA
CAAATCATCGGCCGATTATCTGGACGATGCCGTATATTTAAACGTCGCGC
GTGAAAAGGAGGATGGGCTTCGCGTCGCTAAACAGACAATTCGAATTAAG
GCTCCTGTTACATCAGAGATTTTACAGAACAAGTTAAGCAATTTGAAAGT
AGTTGATAACAACGGTACTGAACACCAAAGAACGGTGagtttcgctttcg
ttttcaaactgTTGATTTTCCTTATTCGAAGAAACAGTGCTAACATTCAG
GATCACCGAGAGTTTAAaggaatctttaacctttctcaagcaagaaaaag
tgaaaccttaagATTTGCGCTACATAAGGACAATCCTTATATATAGGGAC
GTCCTTAAATATAGAGTATAATGCCGTAATGCCTAAGAAACTTTAGTTCC
AATCTGAATTTTGTCAATTAAAATTATCTACATAAATTTTTATCTAGAAT
GCAGCCAAtctttttcgacgtttatcaaTGCGAGCTGAGGGTGACTCGAA
AGAAAATCCGAAATCTAAAGAACTTGttgaagaaagaaagaaaaatggac
cGCGTGTAAAACCATCAACGGCTAGTGTGAAGCGTCGCAAGCCGGCCAAT
AGTAAAACGCTAGACAATGGCTTTTTATCGGAATTAGAAGGCAAGTTTAC
AGTCAGTCCACCATCAAGCAGCCATCTTGGGTACGATGATAATTTGAGTT
GCCACAGCAACTCTGACGTcagtagtttctatagcaacgATGACGAATAT
TGTGATATTGAGGTTGTGACGTCAGAAATGATTCGGTTGGCTACTGAAGA
AGAAGCAcacaaaatgtaaaaattatgGAAAAATTCATAAGAAGATTTTC
GATATAAGATAGATGGTGTGCCTTTTAAGGTCATTTTATAAGGTTTCTAT
CAATTTATAAGGATATAATTCAGGGGTTCCTCCCGATAGTTGCTCCTTTC
TTTGGATTCCGAGATAAATTACTTTAGAACCTTTATGGAACCCCTGAAAT
AACATATACCATGGAAAAGCTCTACAACTGATACAACAATTCGGGGTTTT
GTTTCCCACATGGCATAGGGGAAATACCAAAAATCGATATCCAGAATAAC
TTAACACTGCAACTttgaaatgccttcacaatacactcttctcgaaaTGC
ATTAAATAATTGCGAACCTCGTCCTCAAAGACTAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00060580TCONS_00060580Clytia hemisphaericatranscript
TCONS_00060581TCONS_00060581Clytia hemisphaericatranscript
TCONS_00060582TCONS_00060582Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00060581-proteinTCONS_00060581-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_345supercontigscaffold_345:181920..190704 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.65	2.58	1.01	0.49	4.58	3.22	12.77	13.72	15.2	12.82	10.24	10.68	3.74	3.71	1.67	1.43	4.04	4.58	6.6	6.33	6.68	6.21	7.42	8.56	6.64	8.23	19.04	12.65	4.96	4.3