TCONS_00060580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060580
Unique NameTCONS_00060580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060580 ID=TCONS_00060580|Name=TCONS_00060580|organism=Clytia hemisphaerica|type=transcript|length=2148bp
GCTTCATCGATCCTTCAAGGAAATAAGTCTCAATAAGGATAAAATGCATG
TGCTGCTCTACTGTACTGATTGAAGATAGTTGGGACTTAGATTCTATGAA
CATTTGTAAATATAATTTCAGAAATATGAAAATTACATAAAATGCACGAC
AAAGATCTGATTCTTCAAAAGTATGAGGATGCTCAACTTCAttgtttcaa
aacaaatgatttaGTAATTGAGGAGCAAATCAAACTACCTGGTCATTCAT
GGAACATATCAGCTGTTCAATTCAACTCAAGTGGACTTCATCTTGCATCA
GCTGGCTGGGATAAAACTATCTTAGTATGGGATTTAAAGACTTTGGAGGA
TCCAAAAGTGTTAGAGAATGGTCATCGAGAAACCATTACTTGTTTATCTT
GGTTTCCACAAGTAGATTCAATGATGGTGTCTGGATCATCTGATCACTCT
TTGGTTATTTGGAATGTTGATAACAATGAAGCTATGGCGAAGTTGGTTGA
ACATGAGTCGTGGGTGTTATCGATTTCATTTGACTCTGTTGGTAAACAAA
TGGCCTCGTCTTCATGGAaaggtgacgtcatcatttgggaTATGATGACT
ATCAACCCTTTTGTACAACTAAAAGGACATGCAGAAGGAGTATGGTGTTG
TGCATTCAATGACTGCAATCCCAACTTATTATGTAGTGCAAGTGAAGATA
CGTCATTGAGATTGTGGGACTTGCGTAACGATAACCAGTGGCATTCAGAT
GTTATTTTATCAGGCCTGCATACGGATGGTATTAGATGTTGTTCGTGGTC
ACCTTGTGGGAATTATATCGCTGCTGGATCACGTGACTCAAAGGTATCAA
TATGGGATATCCGTTCTAACAAAGCTATCAACTGTCTGTATGGACATTCA
AATATTGTGATGGGTACTTCCTATCTCTCTTCATCTCTTTTGTTCACTGT
CGGTGATACAAGATGCTGCTTATGGAATACTTTTGATCCGCAAGGGAAAC
CTATTTGTTCCTTACAACAACATACGTGGAGCTATGAGGTGGAATGTTTG
GCACTTTCACCTGATAGAACGCTCTTAGCAACTGGTAGTGTGGATAAACA
AATCACTCTTTCTACAGTAGAAGTCTCTGATGAGTTTAGTCATGGTTTAC
ACGATGACTCTAATGAACTCCCATACGCTAAATTACCTGCTAAAACTGCT
ACGTCCATGCAAGAAGTCAAAAATGACAAATCATCGGCCGATTATCTGGA
CGATGCCGTATATTTAAACGTCGCGCGTGAAAAGGAGGATGGGCTTCGCG
TCGCTAAACAGACAATTCGAATTAAGGCTCCTGTTACATCAGAGATTTTA
CAGAACAAGTTAAGCAATTTGAAAGTAGTTGATAACAACGGTACTGAACA
CCAAAGAACGAATGCAGCCAAtctttttcgacgtttatcaaTGCGAGCTG
AGGGTGACTCGAAAGAAAATCCGAAATCTAAAGAACTTGttgaagaaaga
aagaaaaatggaccGCGTGTAAAACCATCAACGGCTAGTGTGAAGCGTCG
CAAGCCGGCCAATAGTAAAACGCTAGACAATGGCTTTTTATCGGAATTAG
AAGGCAAGTTTACAGTCAGTCCACCATCAAGCAGCCATCTTGGGTACGAT
GATAATTTGAGTTGCCACAGCAACTCTGACGTcagtagtttctatagcaa
cgATGACGAATATTGTGATATTGAGGTTGTGACGTCAGAAATGATTCGGT
TGGCTACTGAAGAAGAAGCAcacaaaatgtaaaaattatgGAAAAATTCA
TAAGAAGATTTTCGATATAAGATAGATGGTGTGCCTTTTAAGGTCATTTT
ATAAGGTTTCTATCAATTTATAAGGATATAATTCAGGGGTTCCTCCCGAT
AGTTGCTCCTTTCTTTGGATTCCGAGATAAATTACTTTAGAACCTTTATG
GAACCCCTGAAATAACATATACCATGGAAAAGCTCTACAACTGATACAAC
AATTCGGGGTTTTGTTTCCCACATGGCATAGGGGAAATACCAAAAATCGA
TATCCAGAATAACTTAACACTGCAACTttgaaatgccttcacaatacact
cttctcgaaaTGCATTAAATAATTGCGAACCTCGTCCTCAAAGACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_345:181920..190704+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060580 ID=TCONS_00060580|Name=TCONS_00060580|organism=Clytia hemisphaerica|type=transcript|length=8785bp|location=Sequence derived from alignment at scaffold_345:181920..190704+ (Clytia hemisphaerica)
GCTTCATCGATCCTTCAAGGAAATAAGTCTCAATAAGGATAAAATGCATG
TGCTGCTCTACTGTACTGATTGAAGATAGTTGGGACTTAGATTCTATGAA
CATTTGTAAATATAATTTCAGAAATATGAAAATTACATAAAATGCACGAC
AAAGATCTGATTCTTCAAAAGTATGAGGATGCTCAACTTCAttgtttcaa
aacaaatgatttaGTAATTGAGGAGCAAATCAAACTACCTGGTCATTCAT
GGAACATATCAGCTGTTCAATTCAACTCAAGTGGACTTCATCTTGCATCA
GCTGGCTGGGATAAAACTATCTTAGTATGGGATTTAAAGACTTTGGAGGA
TCCAAAAGTGTTAGAGAATGGTCATCGAGAAACCATTACTTGTTTATCTT
GGTTTCCACAAGTAGATTCAATGATGGTGTCTGGATCATCTGATCACTCT
TTGGTTATTTGGAATGTTGATAACAATGAAGCTATGGCGAAGTAAGTTAT
CAACAGCTGTATTTTCACCCTGTTTAGTTTGAATTTAAGGTTATCTTGCA
TTGTTTATGTGAAACTTATCTAAAGATTAACCAAGAATCGTAAAATAACT
ATTATATTGAGAGCTCATCTATTGATGGATCTTAGGATACTAGggttttt
tacgatttttttacTTAGAATTGTattttattgattattttttagTTTGT
CTTAGCCATGTGGGGTCTACCAATGTTATGACAAAGTCTCGCTTTATTAT
AATGGTCTTGGACTTAGACTTTTCAGATTTGatgtatattaaaaaaaaaa
acaataagatTTCTAAATATTTTAGGTTGGTTGAACATGAGTCGTGGGTG
TTATCGATTTCATTTGACTCTGTTGGTAAACAAATGGCCTCGTCTTCATG
GAaaggtgacgtcatcatttgggaTATGATGACTATCAACCCTTTTGTAC
AACTAAAAGGACATGCAGAAGGTAGGGCATTGTATCCAGGCTACTTGTTG
AGTTAAGCTTTGTTTACTTCCACTCATTTTTGACCCAAAtagaatcaaaa
aaataatctgcAAACTAATCAGGGAattacacactattgtaccattttat
ttggtttatcctactctcctccaagtattatcccaacaaaaaaataatgc
ttagctaaaagccgtggcctctaatttaggctatttttctccatAAAATT
GTATCCAGACAATCAAATCAACAGCGCATCATGGCTTCGCtaattggcaa
gtttagaaaaaaataaatttataagaacttggaaataatgacttctaaat
gtttatctcctttagctccaatttgaactttttagtcgaggatgagtggg
cgggggggtggggttggttctttaggcaagaaagtgcatgtttAATCACT
TAGAaaagctaaacttccagctggtttatttatttgttaagattatttct
catactcgctctgcaatagaattattactttgctttctgatctgttctga
ttagtagtttgtgggcaacgttctaacacaactaactcaacaaactcatc
tttcacatcttttaatctcttttaagccggagcttccagcgcagctggtt
tattcactttcgtttactgttgaaaacataacaaagttttagctataCTT
TTAAACCGCGTATAACTGTcggttaagccaatcagctttcgggctgacat
cagcatgtatttcagagtataccatgaAAGTGCCACCAAatccgacccct
actataagtatagcgctatagcctttaagtgatgagattttagctccccc
caattacataggtccccccaaaaaagtggtgtactcccagccccctcctt
tttgggaaaaatttagggTGTACCCCAACTAGaaggggggctgacgctat
gtttAGGGTAGTCTGGCTTTCAAGTGTAATTTGAGTATATAAATAAGTAA
GACTAAGAGGGTGtcctttttattgttaaaactttattaaaaaTGATTAA
TGAAGACTTGACAGATATTATTTCTTTACTTTTGACAgaatgacatgaca
tgacaatGAAACTATTACACTGTGACATTTCAACGTTTTAACAAGATATG
TCTGGTATTGTGCTTTATGTGTTGTGTAAGAGAAATTCTTTCATCTACCA
CTTACAATGGATGACCTTTATCACTCCTAGTAATGAGATCTTTTTTTCTC
AGAGCGCtcgaattttgaatatttcggTGTTCTTGTCGTAAAAGGTTTTC
AGCTTTACCCTTTTTTCGAATGTCGTGTTGACTTTCCTATTCTTTCTATA
ATATAAACCTATTTTCAGTCACAGTGACATAATTTATGCAGTATAATTCG
AATCtccataatttcaaaaaatgttgcgtTCGAGATATAAGAAGATTCAG
TTGCACTCACAGAGTGTAAAAGTTTATCCCCTTttgcaatagaccttatc
ggagtttttgatttttctaaaaaagcgatgcattgtgggattgtttcaag
tgtattacaatagaattcccttgaGGAATTCATAAGAGATTTcgattgta
atacactcgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaa
actccgataaggtctaaaCAGTGATAATTACACTTTTCCTCTTCCATTAG
TTCTTGCTTATTTTCTACTGGTCTGAATTCGTCGCCTAGCACGCTAGACT
AGACATATTTATAATGTTTGTTAATTGTTCTCACAACATTACAGTCAAGT
TTTTCTCCTGTTTTCCCTTTTCTGCAGTAAACTTACAGAATCCAAAATAA
CCACAATTACGGCCTCCCCAACTGTGTGTCTATCTACCTTTTAAATTGGT
CAAACCTAGGTTTTTCGTCGGATTTTACACACCAAATTAGCACATATATC
CTGAAATTTTGGTGAGTTATGCCGAATTTAGAGAAGAAGAAGCCTCTTTA
TATACTTCGCTGAGACGGGAATCCCTTTGAGATGAAAGAACTTTTATCAC
TGCTTCTGTTATTATTTTCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTttgcaatagacctta
tcggagtttttgatttttctaaaaaagcgatgcattttgggattgtttca
agtgtattacaatagaattcccttgaGGAATTCATAAGAGATTTcgattg
taatacactcgaaacaatcccacaatgcatcgcttttttagaaaaatcaa
aaactccgataaggtctaaaCAGTGATAATTACACTTTTCCTCTTCCATT
AGTTCTTGCTTATTTTCTACTGGTCTGAATTCGTCGCCTAGCACGCTAGA
CTAGACATATTTATAATGTTTGTTAATTGTTCTCACAACATTACAGTCAA
GTTTTTCTCCTGTTTTCCCTTTTCTGCAGTAAACTTACAGAATCCAAAAT
AACCACAATTACGGCCTCCCCAACTGTGTGTCTATCTACCTTTTAAATTG
GTCAAACCTAGGTTTTTCGTCGGATTTTACACACCAAATTAGCACATATA
TCCTGAAATTTTGGTGAGTTATGCCGAATTTAGAGAAGAAGAAGCCTCTT
TATATACTTCGCTGAGACGGGAATCCCTTTGAGATGAAAGAACTTTAATC
ACTGCTTCTGTTATTATTTTCAGGAGTATGGTGTTGTGCATTCAATGACT
GCAATCCCAACTTATTATGTAGTGCAAGTGAAGATACGTCATTGAGATTG
TGGGACTTGCGTAACGATAACCAGTGGCATTCAGATGTTATTTTATCAGG
CCTGCATACGGATGGTATTAGATGTTGTTCGTGGTCACCTTGTGGGAATT
ATATCGCTGCTGGATCACGTGACTCAAAGGTACCAAACATTTatacactc
ctgtctcacagccccggtgaaacctttttcccacagcgggatgaaaaaat
ttctattgagaTCTCAATGGGGAGGAAAACTCAattgttttggagtgcaa
tttctaaacaatgaatttcgaatggggatgaaatcaaagtcattttctTA
GGGTatttctagggtatttttcccaccggggacgaaatttttgccaaatt
ttccagcgggtctgtgacaaagGGGTGTATTTATCCTGATATAAGgtata
gaaaatgaataaattACTTTTAATGTGTATTAAGCCATTTTTAACGCCCT
GGACATGTATGAAGTGTATATTAGTAAGCTAGTTTTCTCTTCACCTCCAT
TTGTCCAAGGTAGATAaactttttcctattttttgtaGTGAGTTCCTTTG
CTAATAATTGAGGGACAAGACTAATTTTTTTACGTAGAGTTTGGGAGTCT
TTCCTCCGTAAAAAATGGTATCATCATCAtatagttttatttttcttgca
aATCAACATATacatacatttttttataagcataacatttataagtatat
gcaggctcagtttttggtacccaAACAATggctaaaaaaaacatttaatg
agAAATAATAGGGAACTAAATTGCAGGTATGAAGGCAACCTGAAGCCATG
CTTGAAGCTCTAAATCAACAATTGCCACCAATTTACTTTCGCTTATCTTG
TATCAGGTATCAATATGGGATATCCGTTCTAACAAAGCTATCAACTGTCT
GTATGGACATTCAAATATTGTGATGGGTACTTCCTATCTCTCTTCATCTC
TTTTGTTCACTGTCGGTGATACAAGATGCTGCTTATGGAATACTTTTGAT
CCGCAAGGGAAACCTATTTGTTCCTTACAACAACATACGTGGAGCTATGA
GGTAGGTTTATATATTGTTCATTTGTTTTAGATTAaaagattgggctttt
ccagaaaaatttgaacatgggggtggaggatataaggTGTTTTGTGAAAA
TACCTTATGATCCACCGGACAAAAGATCTTATCCCCCCCGGACAATCAAA
ATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgtaaa
aattcggaattccagaggggtatgatcctaaaattgcctggaattccaag
ggggtaggtcacaaaaggttggacctcctcaacagggggtgctcggcttt
tttctggaaaagcccattaatCATtcgcctaaatttatgcttttcATCAT
GAAGAGTTCTGTAGAATCAATATGAAGTTCCTTTTTACTATACTTACCTG
TATCAAACACTTTTCTCTGCTGAAAAAAACGATGCGTTCGGTCAGACACT
ACTCCGTGTCTAAGCTTTTTTTCACAAGTCTCTTGCTGCCTCTGTGGTGT
AGCGCATAGGCAACGAGACACAGAATTTCTCTAACCGATACCATCGAGAT
GTTGAAGCAGGCCGACACAAGACAATATCAAGTATGTAAGAATCGTCCAT
GGctagtttggtacaggctatgattatacatacttttgagatttttcagc
CTTTTATTCCTTATCATTCTTCTTCCATTTTAGGTGGAATGTTTGGCACT
TTCACCTGATAGAACGCTCTTAGCAACTGGTAGTGTGGATAAACAAATCA
CTCTTTCTACAGTAGAAGTCTCTGATGAGTTTAGTCATGGTTTACACGAT
GACTCTAATGAACTCCCATACGCTAAATTACCTGCTAAAACTGCTACGTC
CATGCAAGAAGTCAAAAGTAAgacatttaaaatttgaaacttgAAGGTAT
TTATCGTATTAATATCCTCATTTCAATTTGATCATTAGGCTTTTTGATTA
AACCGGTCgtctttaaaattcaaatccTAGAAAGCTCTCTTCGAGATCTT
CAGGTTGTCAGATTTTTAGATACGGTTTGCTGTGAAATCTGCAAAATCGA
CAAGTATTTTAGAATTTTGGCATATACTCAAGGTATGAAATTTGTTTCTA
GAATGAAAATGTACTAAATAAAACCTTATCAAACCCATCATTTCAGATGA
CAAATCATCGGCCGATTATCTGGACGATGCCGTATATTTAAACGTCGCGC
GTGAAAAGGAGGATGGGCTTCGCGTCGCTAAACAGACAATTCGAATTAAG
GCTCCTGTTACATCAGAGATTTTACAGAACAAGTTAAGCAATTTGAAAGT
AGTTGATAACAACGGTACTGAACACCAAAGAACGGTGagtttcgctttcg
ttttcaaactgTTGATTTTCCTTATTCGAAGAAACAGTGCTAACATTCAG
GATCACCGAGAGTTTAAaggaatctttaacctttctcaagcaagaaaaag
tgaaaccttaagATTTGCGCTACATAAGGACAATCCTTATATATAGGGAC
GTCCTTAAATATAGAGTATAATGCCGTAATGCCTAAGAAACTTTAGTTCC
AATCTGAATTTTGTCAATTAAAATTATCTACATAAATTTTTATCTAGAAT
GCAGCCAAtctttttcgacgtttatcaaTGCGAGCTGAGGGTGACTCGAA
AGAAAATCCGAAATCTAAAGAACTTGttgaagaaagaaagaaaaatggac
cGCGTGTAAAACCATCAACGGCTAGTGTGAAGCGTCGCAAGCCGGCCAAT
AGTAAAACGCTAGACAATGGCTTTTTATCGGAATTAGAAGGCAAGTTTAC
AGTCAGTCCACCATCAAGCAGCCATCTTGGGTACGATGATAATTTGAGTT
GCCACAGCAACTCTGACGTcagtagtttctatagcaacgATGACGAATAT
TGTGATATTGAGGTTGTGACGTCAGAAATGATTCGGTTGGCTACTGAAGA
AGAAGCAcacaaaatgtaaaaattatgGAAAAATTCATAAGAAGATTTTC
GATATAAGATAGATGGTGTGCCTTTTAAGGTCATTTTATAAGGTTTCTAT
CAATTTATAAGGATATAATTCAGGGGTTCCTCCCGATAGTTGCTCCTTTC
TTTGGATTCCGAGATAAATTACTTTAGAACCTTTATGGAACCCCTGAAAT
AACATATACCATGGAAAAGCTCTACAACTGATACAACAATTCGGGGTTTT
GTTTCCCACATGGCATAGGGGAAATACCAAAAATCGATATCCAGAATAAC
TTAACACTGCAACTttgaaatgccttcacaatacactcttctcgaaaTGC
ATTAAATAATTGCGAACCTCGTCCTCAAAGACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038106XLOC_038106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060580-exon-scaffold_345-1491911889:181920..182410TCONS_00060580-exon-scaffold_345-1491911889:181920..182410Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1510915933:181920..182410TCONS_00060580-exon-scaffold_345-1510915933:181920..182410Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1575043694:181920..182410TCONS_00060580-exon-scaffold_345-1575043694:181920..182410Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1491911889:182745..182890TCONS_00060580-exon-scaffold_345-1491911889:182745..182890Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1510915933:182745..182890TCONS_00060580-exon-scaffold_345-1510915933:182745..182890Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1575043694:182745..182890TCONS_00060580-exon-scaffold_345-1575043694:182745..182890Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1491911889:186893..187098TCONS_00060580-exon-scaffold_345-1491911889:186893..187098Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1510915933:186893..187098TCONS_00060580-exon-scaffold_345-1510915933:186893..187098Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1575043694:186893..187098TCONS_00060580-exon-scaffold_345-1575043694:186893..187098Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1491911889:187826..188020TCONS_00060580-exon-scaffold_345-1491911889:187826..188020Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1510915933:187826..188020TCONS_00060580-exon-scaffold_345-1510915933:187826..188020Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1575043694:187826..188020TCONS_00060580-exon-scaffold_345-1575043694:187826..188020Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1491911889:189053..189236TCONS_00060580-exon-scaffold_345-1491911889:189053..189236Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1510915933:189053..189236TCONS_00060580-exon-scaffold_345-1510915933:189053..189236Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1575043694:189053..189236TCONS_00060580-exon-scaffold_345-1575043694:189053..189236Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1491911889:189516..189703TCONS_00060580-exon-scaffold_345-1491911889:189516..189703Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1510915933:189516..189703TCONS_00060580-exon-scaffold_345-1510915933:189516..189703Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1575043694:189516..189703TCONS_00060580-exon-scaffold_345-1575043694:189516..189703Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1491911889:189967..190704TCONS_00060580-exon-scaffold_345-1491911889:189967..190704Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1510915933:189967..190704TCONS_00060580-exon-scaffold_345-1510915933:189967..190704Clytia hemisphaericaexon
TCONS_00060580-exon-scaffold_345-1575043694:189967..190704TCONS_00060580-exon-scaffold_345-1575043694:189967..190704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_345supercontigscaffold_345:181920..190704 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.757892	0.788198	0	0	1.06153	1.08985	10.0114	10.6067	9.58587	9.71089	7.46243	9.01335	1.94537	2.85852	0.643329	0.459229	1.42082	1.91369	3.93747	4.90039	4.39275	4.76909	3.48524	3.84755	5.91795	6.36083	2.50761	1.72261	0.56387	1.34105
Blast
[Close]
BLAST of TCONS_00060580 vs. Swiss-Prot (Human)
Match: POC1B (POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.484e-25
Identity = 77/303 (25.41%), Postives = 129/303 (42.57%), Query Frame = 1 
Query:  202 TNDLVIEEQIKLPGHSWNISAVQFNSSGLHLASAGWDKTILVWDLKTLEDPKVLENGHRETITCLSWFPQVDSMMVSGSSDHSLVIWNVDNNEAMAKLVEHESWVLSISFDSVGKQMASSSWKGDVIIWDMMTINPFVQLKGHAEGVWCCAFNDCNPNLLCSASEDTSLRLWDLRND---NQWHSDVILSGL-----------------------------------HTDGIRCCSWSPCGNYIAAGSRDSKVSIWDIRSNKAINCLYGHSNIVMGTSYLSSSLLFTVG--DTRCCLWNT-FD 987
            T D V+E   K  GH   I+++  + +G  LA+A WD  +++W+ K          GH++ +T + + P   +++ S S D ++ +W  D     ++   H + V S+ F + G+ +A++S    + +W M        L  H   V C  F+  +  L+ S SED ++++WD  N    N +   V  +                                     H+ G+ C S+ P GNY+   S D  + I D+   + I  L GH+  V   S+     LF  G  DT+  LW T FD
Sbjct:    5 TEDPVLERYFK--GHKAAITSLDLSPNGKQLATASWDTFLMLWNFKP-HARAYRYVGHKDVVTSVQFSPH-GNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQVLLWRTNFD 302
The following BLAST results are available for this feature:
BLAST of TCONS_00060580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POC1B5.484e-2525.41POC1 centriolar protein homolog B OS=Homo sapiens ... [more]
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