TCONS_00060582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060582
Unique NameTCONS_00060582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060582 ID=TCONS_00060582|Name=TCONS_00060582|organism=Clytia hemisphaerica|type=transcript|length=1535bp
CAACGTTTTAACAAGATATGTCTGGAGTATGGTGTTGTGCATTCAATGAC
TGCAATCCCAACTTATTATGTAGTGCAAGTGAAGATACGTCATTGAGATT
GTGGGACTTGCGTAACGATAACCAGTGGCATTCAGATGTTATTTTATCAG
GCCTGCATACGGATGGTATTAGATGTTGTTCGTGGTCACCTTGTGGGAAT
TATATCGCTGCTGGATCACGTGACTCAAAGGTATCAATATGGGATATCCG
TTCTAACAAAGCTATCAACTGTCTGTATGGACATTCAAATATTGTGATGG
GTACTTCCTATCTCTCTTCATCTCTTTTGTTCACTGTCGGTGATACAAGA
TGCTGCTTATGGAATACTTTTGATCCGCAAGGGAAACCTATTTGTTCCTT
ACAACAACATACGTGGAGCTATGAGGTGGAATGTTTGGCACTTTCACCTG
ATAGAACGCTCTTAGCAACTGGTAGTGTGGATAAACAAATCACTCTTTCT
ACAGTAGAAGTCTCTGATGAGTTTAGTCATGGTTTACACGATGACTCTAA
TGAACTCCCATACGCTAAATTACCTGCTAAAACTGCTACGTCCATGCAAG
AAGTCAAAAATGACAAATCATCGGCCGATTATCTGGACGATGCCGTATAT
TTAAACGTCGCGCGTGAAAAGGAGGATGGGCTTCGCGTCGCTAAACAGAC
AATTCGAATTAAGGCTCCTGTTACATCAGAGATTTTACAGAACAAGTTAA
GCAATTTGAAAGTAGTTGATAACAACGGTACTGAACACCAAAGAACGAAT
GCAGCCAAtctttttcgacgtttatcaaTGCGAGCTGAGGGTGACTCGAA
AGAAAATCCGAAATCTAAAGAACTTGttgaagaaagaaagaaaaatggac
cGCGTGTAAAACCATCAACGGCTAGTGTGAAGCGTCGCAAGCCGGCCAAT
AGTAAAACGCTAGACAATGGCTTTTTATCGGAATTAGAAGGCAAGTTTAC
AGTCAGTCCACCATCAAGCAGCCATCTTGGGTACGATGATAATTTGAGTT
GCCACAGCAACTCTGACGTcagtagtttctatagcaacgATGACGAATAT
TGTGATATTGAGGTTGTGACGTCAGAAATGATTCGGTTGGCTACTGAAGA
AGAAGCAcacaaaatgtaaaaattatgGAAAAATTCATAAGAAGATTTTC
GATATAAGATAGATGGTGTGCCTTTTAAGGTCATTTTATAAGGTTTCTAT
CAATTTATAAGGATATAATTCAGGGGTTCCTCCCGATAGTTGCTCCTTTC
TTTGGATTCCGAGATAAATTACTTTAGAACCTTTATGGAACCCCTGAAAT
AACATATACCATGGAAAAGCTCTACAACTGATACAACAATTCGGGGTTTT
GTTTCCCACATGGCATAGGGGAAATACCAAAAATCGATATCCAGAATAAC
TTAACACTGCAACTttgaaatgccttcacaatacactcttctcgaaaTGC
ATTAAATAATTGCGAACCTCGTCCTCAAAGACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_345:184000..190704+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060582 ID=TCONS_00060582|Name=TCONS_00060582|organism=Clytia hemisphaerica|type=transcript|length=6705bp|location=Sequence derived from alignment at scaffold_345:184000..190704+ (Clytia hemisphaerica)
CAACGTTTTAACAAGATATGTCTGGTATTGTGCTTTATGTGTTGTGTAAG
AGAAATTCTTTCATCTACCACTTACAATGGATGACCTTTATCACTCCTAG
TAATGAGATCTTTTTTTCTCAGAGCGCtcgaattttgaatatttcggTGT
TCTTGTCGTAAAAGGTTTTCAGCTTTACCCTTTTTTCGAATGTCGTGTTG
ACTTTCCTATTCTTTCTATAATATAAACCTATTTTCAGTCACAGTGACAT
AATTTATGCAGTATAATTCGAATCtccataatttcaaaaaatgttgcgtT
CGAGATATAAGAAGATTCAGTTGCACTCACAGAGTGTAAAAGTTTATCCC
CTTttgcaatagaccttatcggagtttttgatttttctaaaaaagcgatg
cattgtgggattgtttcaagtgtattacaatagaattcccttgaGGAATT
CATAAGAGATTTcgattgtaatacactcgaaacaatcccacaatgcatcg
cttttttagaaaaatcaaaaactccgataaggtctaaaCAGTGATAATTA
CACTTTTCCTCTTCCATTAGTTCTTGCTTATTTTCTACTGGTCTGAATTC
GTCGCCTAGCACGCTAGACTAGACATATTTATAATGTTTGTTAATTGTTC
TCACAACATTACAGTCAAGTTTTTCTCCTGTTTTCCCTTTTCTGCAGTAA
ACTTACAGAATCCAAAATAACCACAATTACGGCCTCCCCAACTGTGTGTC
TATCTACCTTTTAAATTGGTCAAACCTAGGTTTTTCGTCGGATTTTACAC
ACCAAATTAGCACATATATCCTGAAATTTTGGTGAGTTATGCCGAATTTA
GAGAAGAAGAAGCCTCTTTATATACTTCGCTGAGACGGGAATCCCTTTGA
GATGAAAGAACTTTTATCACTGCTTCTGTTATTATTTTCAGGNNNNNNNN
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CCCTTttgcaatagaccttatcggagtttttgatttttctaaaaaagcga
tgcattttgggattgtttcaagtgtattacaatagaattcccttgaGGAA
TTCATAAGAGATTTcgattgtaatacactcgaaacaatcccacaatgcat
cgcttttttagaaaaatcaaaaactccgataaggtctaaaCAGTGATAAT
TACACTTTTCCTCTTCCATTAGTTCTTGCTTATTTTCTACTGGTCTGAAT
TCGTCGCCTAGCACGCTAGACTAGACATATTTATAATGTTTGTTAATTGT
TCTCACAACATTACAGTCAAGTTTTTCTCCTGTTTTCCCTTTTCTGCAGT
AAACTTACAGAATCCAAAATAACCACAATTACGGCCTCCCCAACTGTGTG
TCTATCTACCTTTTAAATTGGTCAAACCTAGGTTTTTCGTCGGATTTTAC
ACACCAAATTAGCACATATATCCTGAAATTTTGGTGAGTTATGCCGAATT
TAGAGAAGAAGAAGCCTCTTTATATACTTCGCTGAGACGGGAATCCCTTT
GAGATGAAAGAACTTTAATCACTGCTTCTGTTATTATTTTCAGGAGTATG
GTGTTGTGCATTCAATGACTGCAATCCCAACTTATTATGTAGTGCAAGTG
AAGATACGTCATTGAGATTGTGGGACTTGCGTAACGATAACCAGTGGCAT
TCAGATGTTATTTTATCAGGCCTGCATACGGATGGTATTAGATGTTGTTC
GTGGTCACCTTGTGGGAATTATATCGCTGCTGGATCACGTGACTCAAAGG
TACCAAACATTTatacactcctgtctcacagccccggtgaaacctttttc
ccacagcgggatgaaaaaatttctattgagaTCTCAATGGGGAGGAAAAC
TCAattgttttggagtgcaatttctaaacaatgaatttcgaatggggatg
aaatcaaagtcattttctTAGGGTatttctagggtatttttcccaccggg
gacgaaatttttgccaaattttccagcgggtctgtgacaaagGGGTGTAT
TTATCCTGATATAAGgtatagaaaatgaataaattACTTTTAATGTGTAT
TAAGCCATTTTTAACGCCCTGGACATGTATGAAGTGTATATTAGTAAGCT
AGTTTTCTCTTCACCTCCATTTGTCCAAGGTAGATAaactttttcctatt
ttttgtaGTGAGTTCCTTTGCTAATAATTGAGGGACAAGACTAATTTTTT
TACGTAGAGTTTGGGAGTCTTTCCTCCGTAAAAAATGGTATCATCATCAt
atagttttatttttcttgcaaATCAACATATacatacatttttttataag
cataacatttataagtatatgcaggctcagtttttggtacccaAACAATg
gctaaaaaaaacatttaatgagAAATAATAGGGAACTAAATTGCAGGTAT
GAAGGCAACCTGAAGCCATGCTTGAAGCTCTAAATCAACAATTGCCACCA
ATTTACTTTCGCTTATCTTGTATCAGGTATCAATATGGGATATCCGTTCT
AACAAAGCTATCAACTGTCTGTATGGACATTCAAATATTGTGATGGGTAC
TTCCTATCTCTCTTCATCTCTTTTGTTCACTGTCGGTGATACAAGATGCT
GCTTATGGAATACTTTTGATCCGCAAGGGAAACCTATTTGTTCCTTACAA
CAACATACGTGGAGCTATGAGGTAGGTTTATATATTGTTCATTTGTTTTA
GATTAaaagattgggcttttccagaaaaatttgaacatgggggtggagga
tataaggTGTTTTGTGAAAATACCTTATGATCCACCGGACAAAAGATCTT
ATCCCCCCCGGACAATCAAAATTACNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNtttgtaaaaattcggaattccagaggggtatgatccta
aaattgcctggaattccaagggggtaggtcacaaaaggttggacctcctc
aacagggggtgctcggcttttttctggaaaagcccattaatCATtcgcct
aaatttatgcttttcATCATGAAGAGTTCTGTAGAATCAATATGAAGTTC
CTTTTTACTATACTTACCTGTATCAAACACTTTTCTCTGCTGAAAAAAAC
GATGCGTTCGGTCAGACACTACTCCGTGTCTAAGCTTTTTTTCACAAGTC
TCTTGCTGCCTCTGTGGTGTAGCGCATAGGCAACGAGACACAGAATTTCT
CTAACCGATACCATCGAGATGTTGAAGCAGGCCGACACAAGACAATATCA
AGTATGTAAGAATCGTCCATGGctagtttggtacaggctatgattataca
tacttttgagatttttcagcCTTTTATTCCTTATCATTCTTCTTCCATTT
TAGGTGGAATGTTTGGCACTTTCACCTGATAGAACGCTCTTAGCAACTGG
TAGTGTGGATAAACAAATCACTCTTTCTACAGTAGAAGTCTCTGATGAGT
TTAGTCATGGTTTACACGATGACTCTAATGAACTCCCATACGCTAAATTA
CCTGCTAAAACTGCTACGTCCATGCAAGAAGTCAAAAGTAAgacatttaa
aatttgaaacttgAAGGTATTTATCGTATTAATATCCTCATTTCAATTTG
ATCATTAGGCTTTTTGATTAAACCGGTCgtctttaaaattcaaatccTAG
AAAGCTCTCTTCGAGATCTTCAGGTTGTCAGATTTTTAGATACGGTTTGC
TGTGAAATCTGCAAAATCGACAAGTATTTTAGAATTTTGGCATATACTCA
AGGTATGAAATTTGTTTCTAGAATGAAAATGTACTAAATAAAACCTTATC
AAACCCATCATTTCAGATGACAAATCATCGGCCGATTATCTGGACGATGC
CGTATATTTAAACGTCGCGCGTGAAAAGGAGGATGGGCTTCGCGTCGCTA
AACAGACAATTCGAATTAAGGCTCCTGTTACATCAGAGATTTTACAGAAC
AAGTTAAGCAATTTGAAAGTAGTTGATAACAACGGTACTGAACACCAAAG
AACGGTGagtttcgctttcgttttcaaactgTTGATTTTCCTTATTCGAA
GAAACAGTGCTAACATTCAGGATCACCGAGAGTTTAAaggaatctttaac
ctttctcaagcaagaaaaagtgaaaccttaagATTTGCGCTACATAAGGA
CAATCCTTATATATAGGGACGTCCTTAAATATAGAGTATAATGCCGTAAT
GCCTAAGAAACTTTAGTTCCAATCTGAATTTTGTCAATTAAAATTATCTA
CATAAATTTTTATCTAGAATGCAGCCAAtctttttcgacgtttatcaaTG
CGAGCTGAGGGTGACTCGAAAGAAAATCCGAAATCTAAAGAACTTGttga
agaaagaaagaaaaatggaccGCGTGTAAAACCATCAACGGCTAGTGTGA
AGCGTCGCAAGCCGGCCAATAGTAAAACGCTAGACAATGGCTTTTTATCG
GAATTAGAAGGCAAGTTTACAGTCAGTCCACCATCAAGCAGCCATCTTGG
GTACGATGATAATTTGAGTTGCCACAGCAACTCTGACGTcagtagtttct
atagcaacgATGACGAATATTGTGATATTGAGGTTGTGACGTCAGAAATG
ATTCGGTTGGCTACTGAAGAAGAAGCAcacaaaatgtaaaaattatgGAA
AAATTCATAAGAAGATTTTCGATATAAGATAGATGGTGTGCCTTTTAAGG
TCATTTTATAAGGTTTCTATCAATTTATAAGGATATAATTCAGGGGTTCC
TCCCGATAGTTGCTCCTTTCTTTGGATTCCGAGATAAATTACTTTAGAAC
CTTTATGGAACCCCTGAAATAACATATACCATGGAAAAGCTCTACAACTG
ATACAACAATTCGGGGTTTTGTTTCCCACATGGCATAGGGGAAATACCAA
AAATCGATATCCAGAATAACTTAACACTGCAACTttgaaatgccttcaca
atacactcttctcgaaaTGCATTAAATAATTGCGAACCTCGTCCTCAAAG
ACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038106XLOC_038106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060582-exon-scaffold_345-1491911889:184000..184023TCONS_00060582-exon-scaffold_345-1491911889:184000..184023Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1510915933:184000..184023TCONS_00060582-exon-scaffold_345-1510915933:184000..184023Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1575043694:184000..184023TCONS_00060582-exon-scaffold_345-1575043694:184000..184023Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1491911889:186893..187098TCONS_00060582-exon-scaffold_345-1491911889:186893..187098Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1510915933:186893..187098TCONS_00060582-exon-scaffold_345-1510915933:186893..187098Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1575043694:186893..187098TCONS_00060582-exon-scaffold_345-1575043694:186893..187098Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1491911889:187826..188020TCONS_00060582-exon-scaffold_345-1491911889:187826..188020Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1510915933:187826..188020TCONS_00060582-exon-scaffold_345-1510915933:187826..188020Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1575043694:187826..188020TCONS_00060582-exon-scaffold_345-1575043694:187826..188020Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1491911889:189053..189236TCONS_00060582-exon-scaffold_345-1491911889:189053..189236Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1510915933:189053..189236TCONS_00060582-exon-scaffold_345-1510915933:189053..189236Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1575043694:189053..189236TCONS_00060582-exon-scaffold_345-1575043694:189053..189236Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1491911889:189516..189703TCONS_00060582-exon-scaffold_345-1491911889:189516..189703Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1510915933:189516..189703TCONS_00060582-exon-scaffold_345-1510915933:189516..189703Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1575043694:189516..189703TCONS_00060582-exon-scaffold_345-1575043694:189516..189703Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1491911889:189967..190704TCONS_00060582-exon-scaffold_345-1491911889:189967..190704Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1510915933:189967..190704TCONS_00060582-exon-scaffold_345-1510915933:189967..190704Clytia hemisphaericaexon
TCONS_00060582-exon-scaffold_345-1575043694:189967..190704TCONS_00060582-exon-scaffold_345-1575043694:189967..190704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_345supercontigscaffold_345:184000..190704 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.131183	0	0	1.92881	1.46216	0.000148469	1.08039	1.44347	1.89449	0.00705539	0.133973	0.599136	0.456997	0.391213	0	1.78043	0.484755	2.66099	0.000602096	1.78815	0.512785	1.04452	1.42019e-07	0.210661	0.976518	16.0851	10.0636	1.54364	0.718137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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