XLOC_034711 (gene) - C. hemisphaerica

Overview
NameXLOC_034711
Unique NameXLOC_034711
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_250:223760..227599+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034711 ID=XLOC_034711|Name=XLOC_034711|organism=Clytia hemisphaerica|type=gene|length=3840bp|location=Sequence derived from alignment at scaffold_250:223760..227599+ (Clytia hemisphaerica)
GATAATGATGATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAA
TGAAAACAATGTGAATGAATCTTTTGAGAATGCCGAAATTGATGCTGGCT
ACATGAGCCCGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAAC
ATTCCAATATTCAAGATCACTTCGGACATTGAATATTCTCCTCAAACCCT
CATCGACTTACTTGTTTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGC
CTGTCAAAGTTCAGGATAATTTTacatttattattgataccaaGAAATTG
AAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAG
GGGAAATTACGGTACCATTGTTTCACTCGACGAAAATATGAAGATAGTGG
ATTCCTCTCGCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAA
CTCCTAATATACAAAGTCTACTACAGAAACAAAGCATACCGCGACTACAA
AAGAAACTCTTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAG
TGTTGGTTGAATACAggtatcaatttttttatttttggagcTTAGCTACC
TTGTCATAGCCTTATAAATATCATTTGAATCAGGcaatttctgaaaataa
agGAAGTTGTATCACTTCCTGgcccctgaccctacctaattCTTACNGAA
AATAAAGGAAGTGGTATCACTTCCTGgcccctgaccctacctaattCTTA
CAGCCTATGGCtcttaaattaacccttgtttGCACATTTTGTTCGTCAGA
TACCAGATATTATTCTGGGAATCAGTTTGTAGTTTTCCtgactttttgca
caatgattTGATCAACTTGTAGTTGTGAAACTAGCTTTACAGTGTTTGAT
TGATCACACTTCTAAAATATTTATATGTGTGTTTGGTGGTATGTGCTTGC
TATTGCTCAACTCAAAATGACCTCATAATATGCTCATTTGCTGTAATTTG
TAGAGTCATAGACTACTTTCTACTGTCAATGAGACAAATTATGAAATCTA
CTTCAATTTAATTCTCTTTAtattgaaagtattttttatcTCTGCTTACA
GATATATCAGCGAAGTACGTCCAATTATTCCAAAACCACATGGACTggct
aagaaaaataaaaaacctttCACTCCAACAGCAGAATCAACTAGAAAGAA
GATAAAGCAAGCAGTGACTGGCACTGTAAGGGGACCAACTCGCGTCTATG
ATGATGTATTTGAGAGTGTTGGTAGGATGAACCATTTTGAGTCTGTGAGC
GAATTACCAAGAGACGTTCAGCAAGTTAAACGCACACGAAACACAGTATG
TAACCTTTATTGATGGGAAATTGAAATGCTTGCTAGTATAACAATATTCC
CCAACCACTATTCCATTTTTTGGACAATTCTGACAGAATATTTTTATATG
AACTGCCTTACTGTCTGTTAATACTGAGAAAGTTTTTACCTTATCAAAAG
AAGAACATTGGGCAGATGGCCCTTAAAGGTTCTAAATCTTAAACTCAGAT
AGGAATGTCTCAAATTATCACATTTTTAATAATATGTACAAGTGTCTTTT
CCATGGCCTATGCCATCAGATACAATGATGAAAATCTCTGTTTTATTCAA
GTTTTACTGTCAAATTTTCATGTGTCAATGCCAACGATAGAAATTGGCAA
AAGCCTTCAAGAGCAgagtttttgagttttgtttttattgctgTTTAAGA
TTCGCTCACCAAAGGAAACAGACGAAACTATTGAATTGCTTACTTTGGCT
GCTTCGAACCCTGATGTTATTGGCAACCTTCAATTTAGCCCCCATGTGAA
GTTTGTTGTGTACACACAATGCGGTTTAGAGCACATCCAGGAAATGTGTA
CGGTTCCTGGGAACCTACTGAGTGTCTTCCAAATTGATAAGACATTCAAG
ATTGGCGATTTCTTTGTCACCAGTACATGCTACCAGTTTGGAAAAGTACG
CAGACGTGATAATGGTAAAATACCTTGGATACCTGGACCTGCTGTATTCC
ATGTCAAAGAAGATCAATCAATTCACAGTCACTTGGCCTCCACGATGAAG
CAAAAGAATCCAGCCATGAAAaatatccttttcattggaatgGACAGAGA
AAAAGCCATTAGCAATGGTTTGTTGGCAGAAGTCCCCTTTGCCAATCTCT
TGTACTGCAAAAAGCATATGGAGGATGATATTTCCTTGAAGATGTCAAAG
CTGAAGCTGGACTCATTGGCGAAAAAGATTATTCTTCAAGATATTTTTAG
AAACTCATCATCTCAGGTAATGAATGCGTTTCCTTAGTAAGTATCTATTA
TTAATTTTTGTGTGGactaaatttaaaatcaaattagcCTGTTTTTCATC
CAatttcattttacaattttaaaaatttggcgTGGTGTGAACAGAGGCTG
AGTCTAAATTAATCCACATGAAAATTAAATCACAATACCAATAAAGATAC
CAAATGTTTGGGTCTattgtttatcattttcaataaaaccattccttatt
tgtttttttaactaTATTTTTGTAGAGGGGTTAAAACCCTAAAGTCAGAG
TTTGAATCCCCACAAAGCTATGTATCACTAAATAACGTTTTCAGGCTCAG
ATTTAAATATGTGTATCTGCTTTGCAATTAGGGGGAATAAGTTAATGCGA
ATTTGGCCCTTTAtagtaaaattaaatttcacaaaacttgaaattttcaa
ccATTTGCACTAATTAATTCCACGAACCTTGAAATTTTGGACCATTAATT
AACAACACATTCATTAATTCCACAAAACATAAATAAAGCTATTTGCATTA
ACTTATTCCGCATTAAATTTAATTATTCCCAACCAATCAGTTAGGTCTTC
AGGAGaaattgcagtggtgcatattatGAAGTGAACACAAAGTGATTAAA
TTCTTCTTTCATTCAGGTTTTGGGATAGGTTGATTGTGAGGATGCTGCTT
ATTTATTTCCACGGATGCCTGATACATATGCTAAATGTAACAAACTCACC
AAAAGTGAAGAGTTTTCCAATTACTTCGAAACGTACATCCTTCAAAATTT
TGCCCATGGATGTTTGGCTGGGGTTAGAAGAAGCGCAGGCCttggtgaaa
acttcttttATACCAATGCAATTGAATCTACCCACAAGAAATTCAAGACA
TACATTAAGCAAGATAAGATGGACAACCAGATTTCTGGAATGATTAATCC
AAAATCTTCTTGGACTGAAGCTGCTTTAAAATATGTTGAAATGATTGCTG
TTCATCATAGGAATTTGgatagcctgggtatccagactcaaaattttaga
aaaaaacactcttacctcaacatacaaagtttctaaaattatagagtctg
gtgcaactaaaaaagtctgaNNNNNNNNNNNNNNGAATTTGGAGCGTGCT
TTGATGGACCAAGGTAACTGGATTTGCATAAATATAAGCACTTGAAAGGG
AGGGTGCCAGATTTTCAAAAGTATAAATTTTTAGGTCTAATTTTAGCCAA
AAAACTgctatcaaactttaaaagccAGTTAAAATATTCGGAAATAGAGC
AGGTTAGAGTTGGCTCCCTAGGGTTCTGCACTTGAAGTGATAATCAGGTT
AGTAGAAAGAAAATCTTATCCTGTATAAATACTCTTTTCAGGGATATATG
AACTTGCTCCAGATTTCCAGCATCTTTTAATCGACAAGGATAAAATGGCT
AACATGACAGATGAGCAGATCAACACGAAAAAGGCACAATTCTGTGGAAA
GTTTCCAGTCATGTACAAGAAGTCTTCTGGAAAGGAAACT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00055100TCONS_00055100Clytia hemisphaericatranscript
TCONS_00055101TCONS_00055101Clytia hemisphaericatranscript
TCONS_00055102TCONS_00055102Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00055101-proteinTCONS_00055101-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:223760..227599 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.23	0.35	0.14	0	2.51	1.92	1.79	2.37	0.89	1.45	0.73	1.71	1.32	0.96	0.85	1.57	1.33	1.41	3.23	2.07	2.35	2.02	0.42	1.97	1.45	1.18	0.17	0.38	0.64	0.16