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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055102 ID=TCONS_00055102|Name=TCONS_00055102|organism=Clytia hemisphaerica|type=transcript|length=576bp
CCAATTATTCCAAAACCACATGGACTggctaagaaaaataaaaaaccttt
CACTCCAACAGCAGAATCAACTAGAAAGAAGATAAAGCAAGCAGTGACTG
GCACTGTAAGGGGACCAACTCGCGTCTATGATGATGTATTTGAGAGTGTT
GGTAGGATGAACCATTTTGAGTCTGTGAGCGAATTACCAAGAGACGTTCA
GCAAGTTAAACGCACACGAAACACAGTTTTGGGATAGGTTGATTGTGAGG
ATGCTGCTTATTTATTTCCACGGATGCCTGATACATATGCTAAATGTAAC
AAACTCACCAAAAGTGAAGAGTTTTCCAATTACTTCGAAACGTACATCCT
TCAAAATTTTGCCCATGGATGTTTGGCTGGGGTTAGAAGAAGCGCAGGCC
ttggtgaaaacttcttttATACCAATGCAATTGAATCTACCCACAAGAAA
TTCAAGACATACATTAAGCAAGATAAGATGGACAACCAGATTTCTGGAAT
GATTAATCCAAAATCTTCTTGGACTGAAGCTGCTTTAAAATATGTTGAAA
TGATTGCTGTTCATCATAGGAATTTG Run BLAST on NCBI transcript from alignment at scaffold_250:224880..227076+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055102 ID=TCONS_00055102|Name=TCONS_00055102|organism=Clytia hemisphaerica|type=transcript|length=2197bp|location=Sequence derived from alignment at scaffold_250:224880..227076+ (Clytia hemisphaerica)
CCAATTATTCCAAAACCACATGGACTggctaagaaaaataaaaaaccttt
CACTCCAACAGCAGAATCAACTAGAAAGAAGATAAAGCAAGCAGTGACTG
GCACTGTAAGGGGACCAACTCGCGTCTATGATGATGTATTTGAGAGTGTT
GGTAGGATGAACCATTTTGAGTCTGTGAGCGAATTACCAAGAGACGTTCA
GCAAGTTAAACGCACACGAAACACAGTATGTAACCTTTATTGATGGGAAA
TTGAAATGCTTGCTAGTATAACAATATTCCCCAACCACTATTCCATTTTT
TGGACAATTCTGACAGAATATTTTTATATGAACTGCCTTACTGTCTGTTA
ATACTGAGAAAGTTTTTACCTTATCAAAAGAAGAACATTGGGCAGATGGC
CCTTAAAGGTTCTAAATCTTAAACTCAGATAGGAATGTCTCAAATTATCA
CATTTTTAATAATATGTACAAGTGTCTTTTCCATGGCCTATGCCATCAGA
TACAATGATGAAAATCTCTGTTTTATTCAAGTTTTACTGTCAAATTTTCA
TGTGTCAATGCCAACGATAGAAATTGGCAAAAGCCTTCAAGAGCAgagtt
tttgagttttgtttttattgctgTTTAAGATTCGCTCACCAAAGGAAACA
GACGAAACTATTGAATTGCTTACTTTGGCTGCTTCGAACCCTGATGTTAT
TGGCAACCTTCAATTTAGCCCCCATGTGAAGTTTGTTGTGTACACACAAT
GCGGTTTAGAGCACATCCAGGAAATGTGTACGGTTCCTGGGAACCTACTG
AGTGTCTTCCAAATTGATAAGACATTCAAGATTGGCGATTTCTTTGTCAC
CAGTACATGCTACCAGTTTGGAAAAGTACGCAGACGTGATAATGGTAAAA
TACCTTGGATACCTGGACCTGCTGTATTCCATGTCAAAGAAGATCAATCA
ATTCACAGTCACTTGGCCTCCACGATGAAGCAAAAGAATCCAGCCATGAA
AaatatccttttcattggaatgGACAGAGAAAAAGCCATTAGCAATGGTT
TGTTGGCAGAAGTCCCCTTTGCCAATCTCTTGTACTGCAAAAAGCATATG
GAGGATGATATTTCCTTGAAGATGTCAAAGCTGAAGCTGGACTCATTGGC
GAAAAAGATTATTCTTCAAGATATTTTTAGAAACTCATCATCTCAGGTAA
TGAATGCGTTTCCTTAGTAAGTATCTATTATTAATTTTTGTGTGGactaa
atttaaaatcaaattagcCTGTTTTTCATCCAatttcattttacaatttt
aaaaatttggcgTGGTGTGAACAGAGGCTGAGTCTAAATTAATCCACATG
AAAATTAAATCACAATACCAATAAAGATACCAAATGTTTGGGTCTattgt
ttatcattttcaataaaaccattccttatttgtttttttaactaTATTTT
TGTAGAGGGGTTAAAACCCTAAAGTCAGAGTTTGAATCCCCACAAAGCTA
TGTATCACTAAATAACGTTTTCAGGCTCAGATTTAAATATGTGTATCTGC
TTTGCAATTAGGGGGAATAAGTTAATGCGAATTTGGCCCTTTAtagtaaa
attaaatttcacaaaacttgaaattttcaaccATTTGCACTAATTAATTC
CACGAACCTTGAAATTTTGGACCATTAATTAACAACACATTCATTAATTC
CACAAAACATAAATAAAGCTATTTGCATTAACTTATTCCGCATTAAATTT
AATTATTCCCAACCAATCAGTTAGGTCTTCAGGAGaaattgcagtggtgc
atattatGAAGTGAACACAAAGTGATTAAATTCTTCTTTCATTCAGGTTT
TGGGATAGGTTGATTGTGAGGATGCTGCTTATTTATTTCCACGGATGCCT
GATACATATGCTAAATGTAACAAACTCACCAAAAGTGAAGAGTTTTCCAA
TTACTTCGAAACGTACATCCTTCAAAATTTTGCCCATGGATGTTTGGCTG
GGGTTAGAAGAAGCGCAGGCCttggtgaaaacttcttttATACCAATGCA
ATTGAATCTACCCACAAGAAATTCAAGACATACATTAAGCAAGATAAGAT
GGACAACCAGATTTCTGGAATGATTAATCCAAAATCTTCTTGGACTGAAG
CTGCTTTAAAATATGTTGAAATGATTGCTGTTCATCATAGGAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055102-exon-scaffold_250-1491911889:224880..225104 | TCONS_00055102-exon-scaffold_250-1491911889:224880..225104 | Clytia hemisphaerica | exon |
| TCONS_00055102-exon-scaffold_250-1510915933:224880..225104 | TCONS_00055102-exon-scaffold_250-1510915933:224880..225104 | Clytia hemisphaerica | exon |
| TCONS_00055102-exon-scaffold_250-1575043694:224880..225104 | TCONS_00055102-exon-scaffold_250-1575043694:224880..225104 | Clytia hemisphaerica | exon |
| TCONS_00055102-exon-scaffold_250-1491911889:226726..227076 | TCONS_00055102-exon-scaffold_250-1491911889:226726..227076 | Clytia hemisphaerica | exon |
| TCONS_00055102-exon-scaffold_250-1510915933:226726..227076 | TCONS_00055102-exon-scaffold_250-1510915933:226726..227076 | Clytia hemisphaerica | exon |
| TCONS_00055102-exon-scaffold_250-1575043694:226726..227076 | TCONS_00055102-exon-scaffold_250-1575043694:226726..227076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:224880..227076 + |
Blast
The following BLAST results are available for this feature:
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