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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055101 ID=TCONS_00055101|Name=TCONS_00055101|organism=Clytia hemisphaerica|type=transcript|length=1276bp
CCGAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAATAT
TACAAGAACAACAAAAACATTCCAATATTCAAGATCACTTCGGACATTGA
ATATTCTCCTCAAACCCTCATCGACTTACTTGTTTCTCGGAAAAGTGCAA
GGGTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTacatttatt
attgataccaaGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGATAA
TGGATGTTGGGAGAACAGGGGAAATTACGGTACCATTGTTTCACTCGACG
AAAATATGAAGATAGTGGATTCCTCTCGCATGAACAACAAAAAGCGCACT
GCACTGAAATCAGGAGAACTCCTAATATACAAAGTCTACTACAGAAACAA
AGCATACCGCGACTACAAAAGAAACTCTTATGTTATCAAAACACAGGATG
ATAAAACACTCGATTTAGTGTTGGTTGAATACAgATATATCAGCGAAGTA
CGTCCAATTATTCCAAAACCACATGGACTggctaagaaaaataaaaaacc
tttCACTCCAACAGCAGAATCAACTAGAAAGAAGATAAAGCAAGCAGTGA
CTGGCACTGTAAGGGGACCAACTCGCGTCTATGATGATGTATTTGAGAGT
GTTGGTAGGATGAACCATTTTGAGTCTGTGAGCGAATTACCAAGAGACGT
TCAGCAAGTTAAACGCACACGAAACACAATTCGCTCACCAAAGGAAACAG
ACGAAACTATTGAATTGCTTACTTTGGCTGCTTCGAACCCTGATGTTATT
GGCAACCTTCAATTTAGCCCCCATGTGAAGTTTGTTGTGTACACACAATG
CGGTTTAGAGCACATCCAGGAAATGTGTACGGTTCCTGGGAACCTACTGA
GTGTCTTCCAAATTGATAAGACATTCAAGATTGGCGATTTCTTTGTCACC
AGTACATGCTACCAGTTTGGAAAAGTACGCAGACGTGATAATGGTAAAAT
ACCTTGGATACCTGGACCTGCTGTATTCCATGTCAAAGAAGATCAATCAA
TTCACAGTCACTTGGCCTCCACGATGAAGCAAAAGAATCCAGCCATGAAA
aatatccttttcattggaatgGACAGAGAAAAAGCCATTAGCAATGGTTT
GTTGGCAGAAGTCCCCTTTGCCAATCTCTTGTACTGCAAAAAGCATATGG
AGGATGATATTTCCTTGAAGATGTCAAAGCTGAAGCTGGACTCATTGGCG
AAAAAGATTATTCTTCAAGATATTTT Run BLAST on NCBI protein sequence of TCONS_00055101-protein >TCONS_00055101-protein ID=TCONS_00055101-protein|Name=TCONS_00055101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
EIDAGYMSPPDEDVKYYKNNKNIPIFKITSDIEYSPQTLIDLLVSRKSAR
VATKKPVKVQDNFTFIIDTKKLKSPNDWAADDNGCWENRGNYGTIVSLDE
NMKIVDSSRMNNKKRTALKSGELLIYKVYYRNKAYRDYKRNSYVIKTQDD
KTLDLVLVEYRYISEVRPIIPKPHGLAKKNKKPFTPTAESTRKKIKQAVT
GTVRGPTRVYDDVFESVGRMNHFESVSELPRDVQQVKRTRNTIRSPKETD
ETIELLTLAASNPDVIGNLQFSPHVKFVVYTQCGLEHIQEMCTVPGNLLS
VFQIDKTFKIGDFFVTSTCYQFGKVRRRDNGKIPWIPGPAVFHVKEDQSI
HSHLASTMKQKNPAMKNILFIGMDREKAISNGLLAEVPFANLLYCKKHME
DDISLKMSKLKLDSLAKKIILQDI Run BLAST on NCBI transcript from alignment at scaffold_250:223842..226056+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055101 ID=TCONS_00055101|Name=TCONS_00055101|organism=Clytia hemisphaerica|type=transcript|length=2215bp|location=Sequence derived from alignment at scaffold_250:223842..226056+ (Clytia hemisphaerica)
CCGAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAATAT
TACAAGAACAACAAAAACATTCCAATATTCAAGATCACTTCGGACATTGA
ATATTCTCCTCAAACCCTCATCGACTTACTTGTTTCTCGGAAAAGTGCAA
GGGTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTacatttatt
attgataccaaGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGATAA
TGGATGTTGGGAGAACAGGGGAAATTACGGTACCATTGTTTCACTCGACG
AAAATATGAAGATAGTGGATTCCTCTCGCATGAACAACAAAAAGCGCACT
GCACTGAAATCAGGAGAACTCCTAATATACAAAGTCTACTACAGAAACAA
AGCATACCGCGACTACAAAAGAAACTCTTATGTTATCAAAACACAGGATG
ATAAAACACTCGATTTAGTGTTGGTTGAATACAggtatcaatttttttat
ttttggagcTTAGCTACCTTGTCATAGCCTTATAAATATCATTTGAATCA
GGcaatttctgaaaataaagGAAGTTGTATCACTTCCTGgcccctgaccc
tacctaattCTTACNGAAAATAAAGGAAGTGGTATCACTTCCTGgcccct
gaccctacctaattCTTACAGCCTATGGCtcttaaattaacccttgtttG
CACATTTTGTTCGTCAGATACCAGATATTATTCTGGGAATCAGTTTGTAG
TTTTCCtgactttttgcacaatgattTGATCAACTTGTAGTTGTGAAACT
AGCTTTACAGTGTTTGATTGATCACACTTCTAAAATATTTATATGTGTGT
TTGGTGGTATGTGCTTGCTATTGCTCAACTCAAAATGACCTCATAATATG
CTCATTTGCTGTAATTTGTAGAGTCATAGACTACTTTCTACTGTCAATGA
GACAAATTATGAAATCTACTTCAATTTAATTCTCTTTAtattgaaagtat
tttttatcTCTGCTTACAGATATATCAGCGAAGTACGTCCAATTATTCCA
AAACCACATGGACTggctaagaaaaataaaaaacctttCACTCCAACAGC
AGAATCAACTAGAAAGAAGATAAAGCAAGCAGTGACTGGCACTGTAAGGG
GACCAACTCGCGTCTATGATGATGTATTTGAGAGTGTTGGTAGGATGAAC
CATTTTGAGTCTGTGAGCGAATTACCAAGAGACGTTCAGCAAGTTAAACG
CACACGAAACACAGTATGTAACCTTTATTGATGGGAAATTGAAATGCTTG
CTAGTATAACAATATTCCCCAACCACTATTCCATTTTTTGGACAATTCTG
ACAGAATATTTTTATATGAACTGCCTTACTGTCTGTTAATACTGAGAAAG
TTTTTACCTTATCAAAAGAAGAACATTGGGCAGATGGCCCTTAAAGGTTC
TAAATCTTAAACTCAGATAGGAATGTCTCAAATTATCACATTTTTAATAA
TATGTACAAGTGTCTTTTCCATGGCCTATGCCATCAGATACAATGATGAA
AATCTCTGTTTTATTCAAGTTTTACTGTCAAATTTTCATGTGTCAATGCC
AACGATAGAAATTGGCAAAAGCCTTCAAGAGCAgagtttttgagttttgt
ttttattgctgTTTAAGATTCGCTCACCAAAGGAAACAGACGAAACTATT
GAATTGCTTACTTTGGCTGCTTCGAACCCTGATGTTATTGGCAACCTTCA
ATTTAGCCCCCATGTGAAGTTTGTTGTGTACACACAATGCGGTTTAGAGC
ACATCCAGGAAATGTGTACGGTTCCTGGGAACCTACTGAGTGTCTTCCAA
ATTGATAAGACATTCAAGATTGGCGATTTCTTTGTCACCAGTACATGCTA
CCAGTTTGGAAAAGTACGCAGACGTGATAATGGTAAAATACCTTGGATAC
CTGGACCTGCTGTATTCCATGTCAAAGAAGATCAATCAATTCACAGTCAC
TTGGCCTCCACGATGAAGCAAAAGAATCCAGCCATGAAAaatatcctttt
cattggaatgGACAGAGAAAAAGCCATTAGCAATGGTTTGTTGGCAGAAG
TCCCCTTTGCCAATCTCTTGTACTGCAAAAAGCATATGGAGGATGATATT
TCCTTGAAGATGTCAAAGCTGAAGCTGGACTCATTGGCGAAAAAGATTAT
TCTTCAAGATATTTT Coding sequence (CDS) from alignment at scaffold_250:223842..226056+ >TCONS_00055101 ID=TCONS_00055101|Name=TCONS_00055101|organism=Clytia hemisphaerica|type=CDS|length=3816bp|location=Sequence derived from alignment at scaffold_250:223842..226056+ (Clytia hemisphaerica)
GAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAATATTA
CAAGAACAACAAAAACATTCCAATATTCAAGATCACTTCGGACATTGAAT
ATTCTCCTCAAACCCTCATCGACTTACTTGTTTCTCGGAAAAGTGCAAGG
GTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTacatttattat
tgataccaaGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGATAATG
GATGTTGGGAGAACAGGGGAAATTACGGTACCATTGTTTCACTCGACGAA
AATATGAAGATAGTGGATTCCTCTCGCATGAACAACAAAAAGCGCACTGC
ACTGAAATCAGGAGAACTCCTAATATACAAAGTCTACTACAGAAACAAAG
CATACCGCGACTACAAAAGAAACTCTTATGTTATCAAAACACAGGATGAT
AAAACACTCGATTTAGTGTTGGTTGAATACAgATATATCAGCGAAGTACG
TCCAATTATTCCAAAACCACATGGACTggctaagaaaaataaaaaacctt
tCACTCCAACAGCAGAATCAACTAGAAAGAAGATAAAGCAAGCAGTGACT
GGCACTGTAAGGGGACCAACTCGCGTCTATGATGATGTATTTGAGAGTGT
TGGTAGGATGAACCATTTTGAGTCTGTGAGCGAATTACCAAGAGACGTTC
AGCAAGTTAAACGCACACGAAACACAATTCGCTCACCAAAGGAAACAGAC
GAAACTATTGAATTGCTTACTTTGGCTGCTTCGAACCCTGATGTTATTGG
CAACCTTCAATTTAGCCCCCATGTGAAGTTTGTTGTGTACACACAATGCG
GTTTAGAGCACATCCAGGAAATGTGTACGGTTCCTGGGAACCTACTGAGT
GTCTTCCAAATTGATAAGACATTCAAGATTGGCGATTTCTTTGTCACCAG
TACATGCTACCAGTTTGGAAAAGTACGCAGACGTGATAATGGTAAAATAC
CTTGGATACCTGGACCTGCTGTATTCCATGTCAAAGAAGATCAATCAATT
CACAGTCACTTGGCCTCCACGATGAAGCAAAAGAATCCAGCCATGAAAaa
tatccttttcattggaatgGACAGAGAAAAAGCCATTAGCAATGGTTTGT
TGGCAGAAGTCCCCTTTGCCAATCTCTTGTACTGCAAAAAGCATATGGAG
GATGATATTTCCTTGAAGATGTCAAAGCTGAAGCTGGACTCATTGGCGAA
AAAGATTATTCTTCAAGATATTGAAATTGATGCTGGCTACATGAGCCCGC
CTGATGAAGATGTGAAATATTACAAGAACAACAAAAACATTCCAATATTC
AAGATCACTTCGGACATTGAATATTCTCCTCAAACCCTCATCGACTTACT
TGTTTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGCCTGTCAAAGTTC
AGGATAATTTTacatttattattgataccaaGAAATTGAAGAGCCCAAAT
GACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAGGGGAAATTACGG
TACCATTGTTTCACTCGACGAAAATATGAAGATAGTGGATTCCTCTCGCA
TGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAACTCCTAATATAC
AAAGTCTACTACAGAAACAAAGCATACCGCGACTACAAAAGAAACTCTTA
TGTTATCAAAACACAGGATGATAAAACACTCGATTTAGTGTTGGTTGAAT
ACAgATATATCAGCGAAGTACGTCCAATTATTCCAAAACCACATGGACTg
gctaagaaaaataaaaaacctttCACTCCAACAGCAGAATCAACTAGAAA
GAAGATAAAGCAAGCAGTGACTGGCACTGTAAGGGGACCAACTCGCGTCT
ATGATGATGTATTTGAGAGTGTTGGTAGGATGAACCATTTTGAGTCTGTG
AGCGAATTACCAAGAGACGTTCAGCAAGTTAAACGCACACGAAACACAAT
TCGCTCACCAAAGGAAACAGACGAAACTATTGAATTGCTTACTTTGGCTG
CTTCGAACCCTGATGTTATTGGCAACCTTCAATTTAGCCCCCATGTGAAG
TTTGTTGTGTACACACAATGCGGTTTAGAGCACATCCAGGAAATGTGTAC
GGTTCCTGGGAACCTACTGAGTGTCTTCCAAATTGATAAGACATTCAAGA
TTGGCGATTTCTTTGTCACCAGTACATGCTACCAGTTTGGAAAAGTACGC
AGACGTGATAATGGTAAAATACCTTGGATACCTGGACCTGCTGTATTCCA
TGTCAAAGAAGATCAATCAATTCACAGTCACTTGGCCTCCACGATGAAGC
AAAAGAATCCAGCCATGAAAaatatccttttcattggaatgGACAGAGAA
AAAGCCATTAGCAATGGTTTGTTGGCAGAAGTCCCCTTTGCCAATCTCTT
GTACTGCAAAAAGCATATGGAGGATGATATTTCCTTGAAGATGTCAAAGC
TGAAGCTGGACTCATTGGCGAAAAAGATTATTCTTCAAGATATTGAAATT
GATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAATATTACAAGAA
CAACAAAAACATTCCAATATTCAAGATCACTTCGGACATTGAATATTCTC
CTCAAACCCTCATCGACTTACTTGTTTCTCGGAAAAGTGCAAGGGTGGCC
ACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTacatttattattgatac
caaGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTT
GGGAGAACAGGGGAAATTACGGTACCATTGTTTCACTCGACGAAAATATG
AAGATAGTGGATTCCTCTCGCATGAACAACAAAAAGCGCACTGCACTGAA
ATCAGGAGAACTCCTAATATACAAAGTCTACTACAGAAACAAAGCATACC
GCGACTACAAAAGAAACTCTTATGTTATCAAAACACAGGATGATAAAACA
CTCGATTTAGTGTTGGTTGAATACAgATATATCAGCGAAGTACGTCCAAT
TATTCCAAAACCACATGGACTggctaagaaaaataaaaaacctttCACTC
CAACAGCAGAATCAACTAGAAAGAAGATAAAGCAAGCAGTGACTGGCACT
GTAAGGGGACCAACTCGCGTCTATGATGATGTATTTGAGAGTGTTGGTAG
GATGAACCATTTTGAGTCTGTGAGCGAATTACCAAGAGACGTTCAGCAAG
TTAAACGCACACGAAACACAATTCGCTCACCAAAGGAAACAGACGAAACT
ATTGAATTGCTTACTTTGGCTGCTTCGAACCCTGATGTTATTGGCAACCT
TCAATTTAGCCCCCATGTGAAGTTTGTTGTGTACACACAATGCGGTTTAG
AGCACATCCAGGAAATGTGTACGGTTCCTGGGAACCTACTGAGTGTCTTC
CAAATTGATAAGACATTCAAGATTGGCGATTTCTTTGTCACCAGTACATG
CTACCAGTTTGGAAAAGTACGCAGACGTGATAATGGTAAAATACCTTGGA
TACCTGGACCTGCTGTATTCCATGTCAAAGAAGATCAATCAATTCACAGT
CACTTGGCCTCCACGATGAAGCAAAAGAATCCAGCCATGAAAaatatcct
tttcattggaatgGACAGAGAAAAAGCCATTAGCAATGGTTTGTTGGCAG
AAGTCCCCTTTGCCAATCTCTTGTACTGCAAAAAGCATATGGAGGATGAT
ATTTCCTTGAAGATGTCAAAGCTGAAGCTGGACTCATTGGCGAAAAAGAT
TATTCTTCAAGATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055101-exon-scaffold_250-1491911889:223842..224325 | TCONS_00055101-exon-scaffold_250-1491911889:223842..224325 | Clytia hemisphaerica | exon |
| TCONS_00055101-exon-scaffold_250-1510915933:223842..224325 | TCONS_00055101-exon-scaffold_250-1510915933:223842..224325 | Clytia hemisphaerica | exon |
| TCONS_00055101-exon-scaffold_250-1575043694:223842..224325 | TCONS_00055101-exon-scaffold_250-1575043694:223842..224325 | Clytia hemisphaerica | exon |
| TCONS_00055101-exon-scaffold_250-1491911889:224861..225104 | TCONS_00055101-exon-scaffold_250-1491911889:224861..225104 | Clytia hemisphaerica | exon |
| TCONS_00055101-exon-scaffold_250-1510915933:224861..225104 | TCONS_00055101-exon-scaffold_250-1510915933:224861..225104 | Clytia hemisphaerica | exon |
| TCONS_00055101-exon-scaffold_250-1575043694:224861..225104 | TCONS_00055101-exon-scaffold_250-1575043694:224861..225104 | Clytia hemisphaerica | exon |
| TCONS_00055101-exon-scaffold_250-1491911889:225509..226056 | TCONS_00055101-exon-scaffold_250-1491911889:225509..226056 | Clytia hemisphaerica | exon |
| TCONS_00055101-exon-scaffold_250-1510915933:225509..226056 | TCONS_00055101-exon-scaffold_250-1510915933:225509..226056 | Clytia hemisphaerica | exon |
| TCONS_00055101-exon-scaffold_250-1575043694:225509..226056 | TCONS_00055101-exon-scaffold_250-1575043694:225509..226056 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:223842..226056 + |
Blast
The following BLAST results are available for this feature:
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