TCONS_00055100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055100
Unique NameTCONS_00055100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055100 ID=TCONS_00055100|Name=TCONS_00055100|organism=Clytia hemisphaerica|type=transcript|length=959bp
GATAATGATGATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAA
TGAAAACAATGTGAATGAATCTTTTGAGAATGCCGAAATTGATGCTGGCT
ACATGAGCCCGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAAC
ATTCCAATATTCAAGATCACTTCGGACATTGAATATTCTCCTCAAACCCT
CATCGACTTACTTGTTTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGC
CTGTCAAAGTTCAGGATAATTTTacatttattattgataccaaGAAATTG
AAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAG
GGGAAATTACGGTACCATTGTTTCACTCGACGAAAATATGAAGATAGTGG
ATTCCTCTCGCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAA
CTCCTAATATACAAAGTCTACTACAGAAACAAAGCATACCGCGACTACAA
AAGAAACTCTTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAG
TGTTGGTTGAATACAgATATATCAGCGAAGTACGTCCAATTATTCCAAAA
CCACATGGACTggctaagaaaaataaaaaacctttCACTCCAACAGCAGA
ATCAACTAGAAAGAAGATAAAGCAAGCAGTGACTGGCACTGTAAGGGGAC
CAACTCGCGTCTATGATGATGTATTTGAGAGTGTTGGTAGGATGAACCAT
TTTGAGTCTGTGAGCGAATTACCAAGAGACGTTCAGCAAGTTAAACGCAC
ACGAAACACAGGATATATGAACTTGCTCCAGATTTCCAGCATCTTTTAAT
CGACAAGGATAAAATGGCTAACATGACAGATGAGCAGATCAACACGAAAA
AGGCACAATTCTGTGGAAAGTTTCCAGTCATGTACAAGAAGTCTTCTGGA
AAGGAAACT
Run BLAST on NCBI

transcript from alignment at scaffold_250:223760..227599+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055100 ID=TCONS_00055100|Name=TCONS_00055100|organism=Clytia hemisphaerica|type=transcript|length=3840bp|location=Sequence derived from alignment at scaffold_250:223760..227599+ (Clytia hemisphaerica)
GATAATGATGATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAA TGAAAACAATGTGAATGAATCTTTTGAGAATGCCGAAATTGATGCTGGCT ACATGAGCCCGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAAC ATTCCAATATTCAAGATCACTTCGGACATTGAATATTCTCCTCAAACCCT CATCGACTTACTTGTTTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGC CTGTCAAAGTTCAGGATAATTTTacatttattattgataccaaGAAATTG AAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAG GGGAAATTACGGTACCATTGTTTCACTCGACGAAAATATGAAGATAGTGG ATTCCTCTCGCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAA CTCCTAATATACAAAGTCTACTACAGAAACAAAGCATACCGCGACTACAA AAGAAACTCTTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAG TGTTGGTTGAATACAggtatcaatttttttatttttggagcTTAGCTACC TTGTCATAGCCTTATAAATATCATTTGAATCAGGcaatttctgaaaataa agGAAGTTGTATCACTTCCTGgcccctgaccctacctaattCTTACNGAA AATAAAGGAAGTGGTATCACTTCCTGgcccctgaccctacctaattCTTA CAGCCTATGGCtcttaaattaacccttgtttGCACATTTTGTTCGTCAGA TACCAGATATTATTCTGGGAATCAGTTTGTAGTTTTCCtgactttttgca caatgattTGATCAACTTGTAGTTGTGAAACTAGCTTTACAGTGTTTGAT TGATCACACTTCTAAAATATTTATATGTGTGTTTGGTGGTATGTGCTTGC TATTGCTCAACTCAAAATGACCTCATAATATGCTCATTTGCTGTAATTTG TAGAGTCATAGACTACTTTCTACTGTCAATGAGACAAATTATGAAATCTA CTTCAATTTAATTCTCTTTAtattgaaagtattttttatcTCTGCTTACA GATATATCAGCGAAGTACGTCCAATTATTCCAAAACCACATGGACTggct aagaaaaataaaaaacctttCACTCCAACAGCAGAATCAACTAGAAAGAA GATAAAGCAAGCAGTGACTGGCACTGTAAGGGGACCAACTCGCGTCTATG ATGATGTATTTGAGAGTGTTGGTAGGATGAACCATTTTGAGTCTGTGAGC GAATTACCAAGAGACGTTCAGCAAGTTAAACGCACACGAAACACAGTATG TAACCTTTATTGATGGGAAATTGAAATGCTTGCTAGTATAACAATATTCC CCAACCACTATTCCATTTTTTGGACAATTCTGACAGAATATTTTTATATG AACTGCCTTACTGTCTGTTAATACTGAGAAAGTTTTTACCTTATCAAAAG AAGAACATTGGGCAGATGGCCCTTAAAGGTTCTAAATCTTAAACTCAGAT AGGAATGTCTCAAATTATCACATTTTTAATAATATGTACAAGTGTCTTTT CCATGGCCTATGCCATCAGATACAATGATGAAAATCTCTGTTTTATTCAA GTTTTACTGTCAAATTTTCATGTGTCAATGCCAACGATAGAAATTGGCAA AAGCCTTCAAGAGCAgagtttttgagttttgtttttattgctgTTTAAGA TTCGCTCACCAAAGGAAACAGACGAAACTATTGAATTGCTTACTTTGGCT GCTTCGAACCCTGATGTTATTGGCAACCTTCAATTTAGCCCCCATGTGAA GTTTGTTGTGTACACACAATGCGGTTTAGAGCACATCCAGGAAATGTGTA CGGTTCCTGGGAACCTACTGAGTGTCTTCCAAATTGATAAGACATTCAAG ATTGGCGATTTCTTTGTCACCAGTACATGCTACCAGTTTGGAAAAGTACG CAGACGTGATAATGGTAAAATACCTTGGATACCTGGACCTGCTGTATTCC ATGTCAAAGAAGATCAATCAATTCACAGTCACTTGGCCTCCACGATGAAG CAAAAGAATCCAGCCATGAAAaatatccttttcattggaatgGACAGAGA AAAAGCCATTAGCAATGGTTTGTTGGCAGAAGTCCCCTTTGCCAATCTCT TGTACTGCAAAAAGCATATGGAGGATGATATTTCCTTGAAGATGTCAAAG CTGAAGCTGGACTCATTGGCGAAAAAGATTATTCTTCAAGATATTTTTAG AAACTCATCATCTCAGGTAATGAATGCGTTTCCTTAGTAAGTATCTATTA TTAATTTTTGTGTGGactaaatttaaaatcaaattagcCTGTTTTTCATC CAatttcattttacaattttaaaaatttggcgTGGTGTGAACAGAGGCTG AGTCTAAATTAATCCACATGAAAATTAAATCACAATACCAATAAAGATAC CAAATGTTTGGGTCTattgtttatcattttcaataaaaccattccttatt tgtttttttaactaTATTTTTGTAGAGGGGTTAAAACCCTAAAGTCAGAG TTTGAATCCCCACAAAGCTATGTATCACTAAATAACGTTTTCAGGCTCAG ATTTAAATATGTGTATCTGCTTTGCAATTAGGGGGAATAAGTTAATGCGA ATTTGGCCCTTTAtagtaaaattaaatttcacaaaacttgaaattttcaa ccATTTGCACTAATTAATTCCACGAACCTTGAAATTTTGGACCATTAATT AACAACACATTCATTAATTCCACAAAACATAAATAAAGCTATTTGCATTA ACTTATTCCGCATTAAATTTAATTATTCCCAACCAATCAGTTAGGTCTTC AGGAGaaattgcagtggtgcatattatGAAGTGAACACAAAGTGATTAAA TTCTTCTTTCATTCAGGTTTTGGGATAGGTTGATTGTGAGGATGCTGCTT ATTTATTTCCACGGATGCCTGATACATATGCTAAATGTAACAAACTCACC AAAAGTGAAGAGTTTTCCAATTACTTCGAAACGTACATCCTTCAAAATTT TGCCCATGGATGTTTGGCTGGGGTTAGAAGAAGCGCAGGCCttggtgaaa acttcttttATACCAATGCAATTGAATCTACCCACAAGAAATTCAAGACA TACATTAAGCAAGATAAGATGGACAACCAGATTTCTGGAATGATTAATCC AAAATCTTCTTGGACTGAAGCTGCTTTAAAATATGTTGAAATGATTGCTG TTCATCATAGGAATTTGgatagcctgggtatccagactcaaaattttaga aaaaaacactcttacctcaacatacaaagtttctaaaattatagagtctg gtgcaactaaaaaagtctgaNNNNNNNNNNNNNNGAATTTGGAGCGTGCT TTGATGGACCAAGGTAACTGGATTTGCATAAATATAAGCACTTGAAAGGG AGGGTGCCAGATTTTCAAAAGTATAAATTTTTAGGTCTAATTTTAGCCAA AAAACTgctatcaaactttaaaagccAGTTAAAATATTCGGAAATAGAGC AGGTTAGAGTTGGCTCCCTAGGGTTCTGCACTTGAAGTGATAATCAGGTT AGTAGAAAGAAAATCTTATCCTGTATAAATACTCTTTTCAGGGATATATG AACTTGCTCCAGATTTCCAGCATCTTTTAATCGACAAGGATAAAATGGCT AACATGACAGATGAGCAGATCAACACGAAAAAGGCACAATTCTGTGGAAA GTTTCCAGTCATGTACAAGAAGTCTTCTGGAAAGGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034711XLOC_034711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055100-exon-scaffold_250-1491911889:223760..224325TCONS_00055100-exon-scaffold_250-1491911889:223760..224325Clytia hemisphaericaexon
TCONS_00055100-exon-scaffold_250-1510915933:223760..224325TCONS_00055100-exon-scaffold_250-1510915933:223760..224325Clytia hemisphaericaexon
TCONS_00055100-exon-scaffold_250-1575043694:223760..224325TCONS_00055100-exon-scaffold_250-1575043694:223760..224325Clytia hemisphaericaexon
TCONS_00055100-exon-scaffold_250-1491911889:224861..225104TCONS_00055100-exon-scaffold_250-1491911889:224861..225104Clytia hemisphaericaexon
TCONS_00055100-exon-scaffold_250-1510915933:224861..225104TCONS_00055100-exon-scaffold_250-1510915933:224861..225104Clytia hemisphaericaexon
TCONS_00055100-exon-scaffold_250-1575043694:224861..225104TCONS_00055100-exon-scaffold_250-1575043694:224861..225104Clytia hemisphaericaexon
TCONS_00055100-exon-scaffold_250-1491911889:227451..227599TCONS_00055100-exon-scaffold_250-1491911889:227451..227599Clytia hemisphaericaexon
TCONS_00055100-exon-scaffold_250-1510915933:227451..227599TCONS_00055100-exon-scaffold_250-1510915933:227451..227599Clytia hemisphaericaexon
TCONS_00055100-exon-scaffold_250-1575043694:227451..227599TCONS_00055100-exon-scaffold_250-1575043694:227451..227599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:223760..227599 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.348986 0.140017 0 0.238228 0 0 0 0 0 0 0.333511 0 0.261421 0.768807 1.43408 1.15394 1.13595 0.68079 1.05593 1.21244 0.993266 0.31842 0.881773 0 0.333067 0 0.376802 0.625389 0.162022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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