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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055100 ID=TCONS_00055100|Name=TCONS_00055100|organism=Clytia hemisphaerica|type=transcript|length=959bp
GATAATGATGATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAA
TGAAAACAATGTGAATGAATCTTTTGAGAATGCCGAAATTGATGCTGGCT
ACATGAGCCCGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAAC
ATTCCAATATTCAAGATCACTTCGGACATTGAATATTCTCCTCAAACCCT
CATCGACTTACTTGTTTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGC
CTGTCAAAGTTCAGGATAATTTTacatttattattgataccaaGAAATTG
AAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAG
GGGAAATTACGGTACCATTGTTTCACTCGACGAAAATATGAAGATAGTGG
ATTCCTCTCGCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAA
CTCCTAATATACAAAGTCTACTACAGAAACAAAGCATACCGCGACTACAA
AAGAAACTCTTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAG
TGTTGGTTGAATACAgATATATCAGCGAAGTACGTCCAATTATTCCAAAA
CCACATGGACTggctaagaaaaataaaaaacctttCACTCCAACAGCAGA
ATCAACTAGAAAGAAGATAAAGCAAGCAGTGACTGGCACTGTAAGGGGAC
CAACTCGCGTCTATGATGATGTATTTGAGAGTGTTGGTAGGATGAACCAT
TTTGAGTCTGTGAGCGAATTACCAAGAGACGTTCAGCAAGTTAAACGCAC
ACGAAACACAGGATATATGAACTTGCTCCAGATTTCCAGCATCTTTTAAT
CGACAAGGATAAAATGGCTAACATGACAGATGAGCAGATCAACACGAAAA
AGGCACAATTCTGTGGAAAGTTTCCAGTCATGTACAAGAAGTCTTCTGGA
AAGGAAACT Run BLAST on NCBI transcript from alignment at scaffold_250:223760..227599+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055100 ID=TCONS_00055100|Name=TCONS_00055100|organism=Clytia hemisphaerica|type=transcript|length=3840bp|location=Sequence derived from alignment at scaffold_250:223760..227599+ (Clytia hemisphaerica)
GATAATGATGATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAA
TGAAAACAATGTGAATGAATCTTTTGAGAATGCCGAAATTGATGCTGGCT
ACATGAGCCCGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAAC
ATTCCAATATTCAAGATCACTTCGGACATTGAATATTCTCCTCAAACCCT
CATCGACTTACTTGTTTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGC
CTGTCAAAGTTCAGGATAATTTTacatttattattgataccaaGAAATTG
AAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAG
GGGAAATTACGGTACCATTGTTTCACTCGACGAAAATATGAAGATAGTGG
ATTCCTCTCGCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAA
CTCCTAATATACAAAGTCTACTACAGAAACAAAGCATACCGCGACTACAA
AAGAAACTCTTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAG
TGTTGGTTGAATACAggtatcaatttttttatttttggagcTTAGCTACC
TTGTCATAGCCTTATAAATATCATTTGAATCAGGcaatttctgaaaataa
agGAAGTTGTATCACTTCCTGgcccctgaccctacctaattCTTACNGAA
AATAAAGGAAGTGGTATCACTTCCTGgcccctgaccctacctaattCTTA
CAGCCTATGGCtcttaaattaacccttgtttGCACATTTTGTTCGTCAGA
TACCAGATATTATTCTGGGAATCAGTTTGTAGTTTTCCtgactttttgca
caatgattTGATCAACTTGTAGTTGTGAAACTAGCTTTACAGTGTTTGAT
TGATCACACTTCTAAAATATTTATATGTGTGTTTGGTGGTATGTGCTTGC
TATTGCTCAACTCAAAATGACCTCATAATATGCTCATTTGCTGTAATTTG
TAGAGTCATAGACTACTTTCTACTGTCAATGAGACAAATTATGAAATCTA
CTTCAATTTAATTCTCTTTAtattgaaagtattttttatcTCTGCTTACA
GATATATCAGCGAAGTACGTCCAATTATTCCAAAACCACATGGACTggct
aagaaaaataaaaaacctttCACTCCAACAGCAGAATCAACTAGAAAGAA
GATAAAGCAAGCAGTGACTGGCACTGTAAGGGGACCAACTCGCGTCTATG
ATGATGTATTTGAGAGTGTTGGTAGGATGAACCATTTTGAGTCTGTGAGC
GAATTACCAAGAGACGTTCAGCAAGTTAAACGCACACGAAACACAGTATG
TAACCTTTATTGATGGGAAATTGAAATGCTTGCTAGTATAACAATATTCC
CCAACCACTATTCCATTTTTTGGACAATTCTGACAGAATATTTTTATATG
AACTGCCTTACTGTCTGTTAATACTGAGAAAGTTTTTACCTTATCAAAAG
AAGAACATTGGGCAGATGGCCCTTAAAGGTTCTAAATCTTAAACTCAGAT
AGGAATGTCTCAAATTATCACATTTTTAATAATATGTACAAGTGTCTTTT
CCATGGCCTATGCCATCAGATACAATGATGAAAATCTCTGTTTTATTCAA
GTTTTACTGTCAAATTTTCATGTGTCAATGCCAACGATAGAAATTGGCAA
AAGCCTTCAAGAGCAgagtttttgagttttgtttttattgctgTTTAAGA
TTCGCTCACCAAAGGAAACAGACGAAACTATTGAATTGCTTACTTTGGCT
GCTTCGAACCCTGATGTTATTGGCAACCTTCAATTTAGCCCCCATGTGAA
GTTTGTTGTGTACACACAATGCGGTTTAGAGCACATCCAGGAAATGTGTA
CGGTTCCTGGGAACCTACTGAGTGTCTTCCAAATTGATAAGACATTCAAG
ATTGGCGATTTCTTTGTCACCAGTACATGCTACCAGTTTGGAAAAGTACG
CAGACGTGATAATGGTAAAATACCTTGGATACCTGGACCTGCTGTATTCC
ATGTCAAAGAAGATCAATCAATTCACAGTCACTTGGCCTCCACGATGAAG
CAAAAGAATCCAGCCATGAAAaatatccttttcattggaatgGACAGAGA
AAAAGCCATTAGCAATGGTTTGTTGGCAGAAGTCCCCTTTGCCAATCTCT
TGTACTGCAAAAAGCATATGGAGGATGATATTTCCTTGAAGATGTCAAAG
CTGAAGCTGGACTCATTGGCGAAAAAGATTATTCTTCAAGATATTTTTAG
AAACTCATCATCTCAGGTAATGAATGCGTTTCCTTAGTAAGTATCTATTA
TTAATTTTTGTGTGGactaaatttaaaatcaaattagcCTGTTTTTCATC
CAatttcattttacaattttaaaaatttggcgTGGTGTGAACAGAGGCTG
AGTCTAAATTAATCCACATGAAAATTAAATCACAATACCAATAAAGATAC
CAAATGTTTGGGTCTattgtttatcattttcaataaaaccattccttatt
tgtttttttaactaTATTTTTGTAGAGGGGTTAAAACCCTAAAGTCAGAG
TTTGAATCCCCACAAAGCTATGTATCACTAAATAACGTTTTCAGGCTCAG
ATTTAAATATGTGTATCTGCTTTGCAATTAGGGGGAATAAGTTAATGCGA
ATTTGGCCCTTTAtagtaaaattaaatttcacaaaacttgaaattttcaa
ccATTTGCACTAATTAATTCCACGAACCTTGAAATTTTGGACCATTAATT
AACAACACATTCATTAATTCCACAAAACATAAATAAAGCTATTTGCATTA
ACTTATTCCGCATTAAATTTAATTATTCCCAACCAATCAGTTAGGTCTTC
AGGAGaaattgcagtggtgcatattatGAAGTGAACACAAAGTGATTAAA
TTCTTCTTTCATTCAGGTTTTGGGATAGGTTGATTGTGAGGATGCTGCTT
ATTTATTTCCACGGATGCCTGATACATATGCTAAATGTAACAAACTCACC
AAAAGTGAAGAGTTTTCCAATTACTTCGAAACGTACATCCTTCAAAATTT
TGCCCATGGATGTTTGGCTGGGGTTAGAAGAAGCGCAGGCCttggtgaaa
acttcttttATACCAATGCAATTGAATCTACCCACAAGAAATTCAAGACA
TACATTAAGCAAGATAAGATGGACAACCAGATTTCTGGAATGATTAATCC
AAAATCTTCTTGGACTGAAGCTGCTTTAAAATATGTTGAAATGATTGCTG
TTCATCATAGGAATTTGgatagcctgggtatccagactcaaaattttaga
aaaaaacactcttacctcaacatacaaagtttctaaaattatagagtctg
gtgcaactaaaaaagtctgaNNNNNNNNNNNNNNGAATTTGGAGCGTGCT
TTGATGGACCAAGGTAACTGGATTTGCATAAATATAAGCACTTGAAAGGG
AGGGTGCCAGATTTTCAAAAGTATAAATTTTTAGGTCTAATTTTAGCCAA
AAAACTgctatcaaactttaaaagccAGTTAAAATATTCGGAAATAGAGC
AGGTTAGAGTTGGCTCCCTAGGGTTCTGCACTTGAAGTGATAATCAGGTT
AGTAGAAAGAAAATCTTATCCTGTATAAATACTCTTTTCAGGGATATATG
AACTTGCTCCAGATTTCCAGCATCTTTTAATCGACAAGGATAAAATGGCT
AACATGACAGATGAGCAGATCAACACGAAAAAGGCACAATTCTGTGGAAA
GTTTCCAGTCATGTACAAGAAGTCTTCTGGAAAGGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055100-exon-scaffold_250-1491911889:223760..224325 | TCONS_00055100-exon-scaffold_250-1491911889:223760..224325 | Clytia hemisphaerica | exon |
| TCONS_00055100-exon-scaffold_250-1510915933:223760..224325 | TCONS_00055100-exon-scaffold_250-1510915933:223760..224325 | Clytia hemisphaerica | exon |
| TCONS_00055100-exon-scaffold_250-1575043694:223760..224325 | TCONS_00055100-exon-scaffold_250-1575043694:223760..224325 | Clytia hemisphaerica | exon |
| TCONS_00055100-exon-scaffold_250-1491911889:224861..225104 | TCONS_00055100-exon-scaffold_250-1491911889:224861..225104 | Clytia hemisphaerica | exon |
| TCONS_00055100-exon-scaffold_250-1510915933:224861..225104 | TCONS_00055100-exon-scaffold_250-1510915933:224861..225104 | Clytia hemisphaerica | exon |
| TCONS_00055100-exon-scaffold_250-1575043694:224861..225104 | TCONS_00055100-exon-scaffold_250-1575043694:224861..225104 | Clytia hemisphaerica | exon |
| TCONS_00055100-exon-scaffold_250-1491911889:227451..227599 | TCONS_00055100-exon-scaffold_250-1491911889:227451..227599 | Clytia hemisphaerica | exon |
| TCONS_00055100-exon-scaffold_250-1510915933:227451..227599 | TCONS_00055100-exon-scaffold_250-1510915933:227451..227599 | Clytia hemisphaerica | exon |
| TCONS_00055100-exon-scaffold_250-1575043694:227451..227599 | TCONS_00055100-exon-scaffold_250-1575043694:227451..227599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:223760..227599 + |
Blast
The following BLAST results are available for this feature:
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