XLOC_008926 (gene) - C. hemisphaerica

Overview
NameXLOC_008926
Unique NameXLOC_008926
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000224:210999..217731+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008926 ID=XLOC_008926|Name=XLOC_008926|organism=Clytia hemisphaerica|type=gene|length=6733bp|location=Sequence derived from alignment at sc0000224:210999..217731+ (Clytia hemisphaerica)
TATGATAGGAACTCTCGTAGATGTGATCATGAAAGACTCGTTCGATGCTC
AGCACCAGGTAATTAATCTTATATTTGCGTGCTCGTTCAGATACACAAGT
AAATGACACGAGTGTgacttttgagcaaatttaaTCACTTGATCCAATAG
AGTTTTCACAGGACGACCTTTCTTTGTATTATTGATTGGTTTAACTGGTT
TGGGGGATTTAGGCCACATTGACTGTTTATTTTTCCTGAGAGTTGAGATT
TCAATTAGGACAGNccttccgcctactttttttacgaaattcaaatatat
tttccaatctatgatttgatgcctcacagaaaatttaaacattacgttat
gttatatttgtagacattcgccagctaaaaatgtctttagccgtatatcg
gctaaaggcggcaaatctctggacaNTGGACTATTATTTTAATTGATTCA
GTTGTTTTCTTCCTTTATTTTAGCAAGAGGTCGACAACCAGTCACGCAGC
CACGTAAATACTTTATTCATCTCATTGCCTAACTTTAAGCGGAGGAAAGT
ACCGGTAGATATTGACCGAGTCTGTTCATTGGCACGTTACAATTGGTTGC
AAGGGAATAGTTTTGATAGTCTTTTTTGTTTAGCGCAGGTTTTCGTACAT
GGGATCGTTTTCCCTTATTCCCTGgtctgaattgcagacctctacaaGAC
CGCAGAAGCACGAAACGGTTAGTGTATGCCAGTAGCCTACTTCATCCCAT
AAAATTCTTTTGAGCCTGTTGaaacagaaaagagaaaaaaacatacTTGA
AAATCGACATTAAGAAATGCTGAATTTACAGACGGGTTGGGCTACGGGAA
CTCAAAAAGGAATTGATGGTCATTTTTGAGCAACTCCTTTTTGTCTTTAC
AGTCTCAAGTGATTTAAAATTTGATCTCTAACATAGATTTAAAGGTAAAC
AATTCCGTCTTCAGAAAACCGCCAGATAGAAGCGATTAAATTCAAACCAT
AGCTACAGGTATTATCCTCATCAATCAAATGATAATGATATGGATCCTGG
GAATAAAGTTAATAGGGTTTTAATAGCATTTAAGGTATCTCCTGATTATT
TCTCGAGTTTGACCAATCCGCCAAGAAGGTTTTTTTCATAATGTACCTAA
CATTCCATTTGCTTTAGTGTGCACAAATATCTGTTTTTTCCCCCACAATG
CTTGCATATTTTAAACATAATATATgctgttgaaaagataattcagagca
NAGGTTTTCGGCCAGattgagttttttattttccctGAGAGTTGAGATAA
TTAGGACAGTGAATCAATGTTTCagttgttttctttctttttttagcgAC
AACACGACAACCAGTCACACAACCACgtaaatattttattgttcatgTCA
TTGCCTAATTCTAGNATTGACCGAGTCTGTTCATTGGCACGTTACAATTG
GTTGCAAGGGAATAGTTTTGATAGTCTTTTTTGTTTAGCGCAGGTTTTCG
TACATGGTTTAGTGTGCACAAATATCTCTTTTTTCCCCCACAATGCTTGC
ATATTTTAAACATAATATATgctgttgaaaagataattcagagcgccaaa
ttttatgaaaagtaattaaaaattttttagaaaatgatgatgaaaactga
agaagaagaaaatgagtCTTTTATTAATTACTGCtagaaacttgattttt
tgttCAGTGGTACTTTGAAGCCTCTTGATTTCAGGCTTACAATTATTTCT
ACATAGAATTATAACATAGAAAGCTCTAGGCCTTATATGGCcatatactc
ttaggtgccaaataaNACCtggtgtgccacaaataagttaccctctttga
ttaGATATTAtaggcagtagaaaagagatttttcaaagattgtttcgaAA
TCATTCAGatgaaagcctaacttaaaatttggtgtattactttttaattt
tacttcattggttcaaaagttatgttgaaaaacctaaaatgtcaatttta
aaaaatgtcaaaaaaggtgAATAAGCAAGGAATAATTACTTTATCGTAAA
AATGCTCTCCTACGCAGATTGTTCTTTACctctgtctacgctactggaaT
AGTGCAAAGAAAAAGCAAATGTACTTATCTTTTTATTGCTTTCTTCATTT
ATCTTTCATATCAACGCCAGGAACAAACACTGCAGACCTTTGCCGTAACA
AAAACGATGGAACAAGACTCTCAAATCCAAACAGTTGTTCGTCATATATT
GTTTGCACGCACAGGCGAGCGACAATCATGAACTGTCCACCAAGAACATT
GTATGATAGGAACTCTCGTAGATGTGATCATGAAAGACTCGTTCGATGCT
CAGCACCAGGTAATTAATCTTATATTTGCGTGCTCGTTCAGATACACAAG
TAAATGACACGAGTGTgacttttgagcaaatttaaTCACTTGATCCAATA
GAGTTTTCACAGGACGACCTTTCTTTGTATTATTGATTGGTTTAACTGGT
TAAGGGGATTTAGGCCACATTGACTGTTTATTTTTCCTGAGAGTTGAGAT
TTCAATTAGGACAATGGACTATTATTTTAATTGATTCAGTTGTTTTCTTC
CTTTATTTTAGCAAGAGGTCGACAACCAGTCACGCAGCCACGTAAATACT
TTATTCATCTCATTGCCTAACTTTAAGCGGAGGAAAGTACCGGTAGATAT
TGACCGAGTCTGTTCATTGGCACGTTACAATTGGTTGCAAGGGAATAGTT
TTGATAGTCTTTTTTGTTTAGCGCAGGTTTTCGTACATGGGATCGTTTTC
CCTTATTCCCTGgtctgaattgcagacctctacaaGACCGCAGAAGCACG
AAACGGTTAGTGTATGCCAGTAGCCTACTTCATCCCATAAAATTCTTTTG
AGCCTGTTGaaacagaaaagagaaaaaaacatacTTGAAAATCGACATTA
AGAAATGCTGAATTTACAGACGGGTTGGGCTACGGGAACTCAAAAAGGAA
TTGATGGTCATTTTTGAGCAACTCCTTTTTGTCTTTACAGTCTCAAGTGA
TTTAAAATTTGATCTCTAACATAGATTTAAAGGTAAACAATTCCGTCTTC
AGAAAACCGCCAGATAGAAGCGATTAAATTCAAACCATAGCTACAGGTAT
TATCCTCATCAATCAAATGATAATGATATGGATCCTGGGAATAAAGTTAA
TAGGGTTTTAATAGCATTTAAGGTATCTCCTGATTATTTCTCGAGTTTGA
CCAATCCGCCAAGAAGGTTTTTTTCATAATGTACCTAACATTCCATTTGC
TTTAGTGTGCACAAATATCTGTTTTTTCCCCCACAATGCTTGCATATTTT
AAACATAATATATgctgttgaaaagataattcagagcaccaaattttatg
aaaagtaattaaaaattttttagaaaatgatgatgaaaactgaagaagaa
gaaaatgagtCTTTTATTAATTACTGCtagaaacttgattttttgttCAG
TGGTACTTTGAAGCCTCTTGATTTCAGGCTTACAATTATTTCTACATAGA
ATTATAACATAGAAAGCTCTAGGCCTTATATGGCcatatactcttaggtg
ccaaataaacggggggNccgtttatttggcacctaagagtatggTTGTAC
TTTGGAAGGAAAGAACAGTTTACCTTCGATTCAAGAACTTTATTGGGGAA
ATACTAGTTTATGGCTGAAAGCAAATGTACTTATCTTTTTATTGCTTTCT
TCATTTATCTTTCATATCAACGCCAGGAACAAACACTGCAGACCTTTGCC
GTAACAGAAAAGATGAAACAAGACTCTCAAATCCGAACAGTTGTTCGTCA
TATTTTTTTTGCAAGCACGGGCAAACGACAATCATGAACTGTCCACCAGT
AACATTGTATGATGAGACCTATGGATGTATTCATGAAACACGTGTTGATT
GCTCAGCATCAGGTAATTAATCTAATATTTGCGTGCTCATTCAGATACAC
AAGTCATAAGTCACAAGTCTGACTTTTAAGCAAATTTTATCAGTGAGGGT
TGAAGGAATCTGCTGATCTCANAATCTAATATTTGCGTGCTCATTCAGAT
ACACAAGTCATAAGTCACAAGTCTGACTTTTAAGCAAATTTTATCAGTGA
GGGTTGAAGGAATCCACTGATCTCAAGTCTCTTATATTATTATTGGAGAG
TTTTCGATTGGTTTAACTGGTTTGGGGGGTTTTGGGCCATATTGAAAGTT
TTATTCCCCCCAAGAGTTGAGATTTCAATTAGGACAATGGACTATTATAG
ACTCTATTATTTTAATTGATTCAGTTGTTTTCTTCCTTTATTTTAGCAAG
AAGTCGACAACCAGTCACGCAGCCACGTAAATATTTTATTCATCTCATTG
CCTAAATTGACCGAGTCTGTTCATTGGCACGTTACAATTGGTTGCAAGGG
AATAGTTTTGATAGTCTTTTTTGTTTAGCGCAGGTTTTCGTACATGGGAC
CATTTTCCCTTATTCCCTGgtctgaattgcagacctctacaaGACCGCAG
AAGCACGAAACCGTTAGTGCATGTCAGTAGCCTAATTAATCCCATGTCAA
AGATAAAATTCTTTTGAGCctgttgaaaaagaaaaaagaaaaaacatact
TGAAAATCGACATTAAGAAATGCTGAATTTACAGAGGGGTTGGGCTACGG
GAATTCAAAAAGGTGATGATGATCATTTTTGAGCAACTCCTTTTTGTCTT
TACAGTCTCAAGTGATTTAAAATTTGATCTCTAACATAGATTTAAGAGTA
AACAATTCCGTCTTCAGATAGAAGCTAGATAGAAGCGATTAAATTCAAAC
CATAGCTACGGGTAATACCCTCATCAATCAAATGATAATGATATGGACCC
TGGTgataaaaacacccctgtctcagtgccccggtggcatgatttcagta
catgatttttttcagtacatggtttcagtacatgattttttcctacgtca
ctgcagtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtactgaaaccatgtactgaaaaaaatcatgtac
tgaaatcatgccaccggggcactgagacaggggtgtataaaatTAATAGT
GTTTAATAGCACTTGAGTTATCTCCTGATTATTTCTCGAGTTTAACCAAt
ccaagaagtttttttcataatgtaCTTAACATTCCATTCGCTCTGTTTTG
TTTAGTATACTTTAACATTTCAAACATAATGCAGTATACGGCCCCCAAAA
CTGAGACGGCCAcatttgggggccacatactgtatatgccgttgaaaaga
taattcagagcaccAAACTTGTAACTTTTTCCTAGTAGTTATAATCTTAT
AATGCTCTGAAATTATCTTTTGAACAGTATATAATACGTTATAATTtaag
tatttctttaaaaatggaAAGTAAATCAAAGatgcagtagcgtagacagg
ggtgaagTAACATTTGCATAGGAGAGCAGATTAAAAGGACACAGTAATAA
TGTTTTATACTGTGAACAAGTAATTACTTTAACGTAAAAAGCAGCTCTCC
TACGCAGATTGTTCTTtacccctgtctacgctactggaaGAAAgcaaatt
aactttttttaaatgattttttcatttatctttcATATCAAAACCAGGAA
AAAACACTGCAGACATTTGCCGTGGCATAAATGATGGAGCAAAACAAATA
AACCCTAACACTTGTTCATCATATATTGTTTGCGAGCACAGCCGACCGAC
AATCATATACTGTCGATCAGGAACTTTGTATGATAGGGACTCTCGTAGAT
GTATTCATGAAACACGTGTTCGATGCTCACTATCAGGTAATTAATCTGAT
ATTTGCGCGCTCGTTCAGACCATAATCCATAtt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015975TCONS_00015975Clytia hemisphaericatranscript
TCONS_00015976TCONS_00015976Clytia hemisphaericatranscript
TCONS_00015977TCONS_00015977Clytia hemisphaericatranscript
TCONS_00015978TCONS_00015978Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015975-proteinTCONS_00015975-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:210999..217731 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.99	1.81	1.46	0.15	0.14	0.69	1.66	2.33	0.27	0.28	3.28	0.27	0.44	0.64	42.41	35.66	9.49	6.54	2.75	0.74	0.26	0	2.22	1.35	0.43	0.13	0.18	0.19	0.48	1.05