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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015978 ID=TCONS_00015978|Name=TCONS_00015978|organism=Clytia hemisphaerica|type=transcript|length=476bp
GTCGACAACCAGTCACGCAGCCACGAACAAACACTGCAGACCTTTGCCGT
AACAGAAAAGATGAAACAAGACTCTCAAATCCGAACAGTTGTTCGTCATA
TTTTTTTTGCAAGCACGGGCAAACGACAATCATGAACTGTCCACCAGTAA
CATTGTATGATGAGACCTATGGATGTATTCATGAAACACGTGTTGATTGC
TCAGCATCAGCAAGAAGTCGACAACCAGTCACGCAGCCACGAAAAAACAC
TGCAGACATTTGCCGTGGCATAAATGATGGAGCAAAACAAATAAACCCTA
ACACTTGTTCATCATATATTGTTTGCGAGCACAGCCGACCGACAATCATA
TACTGTCGATCAGGAACTTTGTATGATAGGGACTCTCGTAGATGTATTCA
TGAAACACGTGTTCGATGCTCACTATCAGGTAATTAATCTGATATTTGCG
CGCTCGTTCAGACCATAATCCATAtt Run BLAST on NCBI transcript from alignment at sc0000224:213616..217731+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015978 ID=TCONS_00015978|Name=TCONS_00015978|organism=Clytia hemisphaerica|type=transcript|length=4116bp|location=Sequence derived from alignment at sc0000224:213616..217731+ (Clytia hemisphaerica)
GTCGACAACCAGTCACGCAGCCACGTAAATACTTTATTCATCTCATTGCC
TAACTTTAAGCGGAGGAAAGTACCGGTAGATATTGACCGAGTCTGTTCAT
TGGCACGTTACAATTGGTTGCAAGGGAATAGTTTTGATAGTCTTTTTTGT
TTAGCGCAGGTTTTCGTACATGGGATCGTTTTCCCTTATTCCCTGgtctg
aattgcagacctctacaaGACCGCAGAAGCACGAAACGGTTAGTGTATGC
CAGTAGCCTACTTCATCCCATAAAATTCTTTTGAGCCTGTTGaaacagaa
aagagaaaaaaacatacTTGAAAATCGACATTAAGAAATGCTGAATTTAC
AGACGGGTTGGGCTACGGGAACTCAAAAAGGAATTGATGGTCATTTTTGA
GCAACTCCTTTTTGTCTTTACAGTCTCAAGTGATTTAAAATTTGATCTCT
AACATAGATTTAAAGGTAAACAATTCCGTCTTCAGAAAACCGCCAGATAG
AAGCGATTAAATTCAAACCATAGCTACAGGTATTATCCTCATCAATCAAA
TGATAATGATATGGATCCTGGGAATAAAGTTAATAGGGTTTTAATAGCAT
TTAAGGTATCTCCTGATTATTTCTCGAGTTTGACCAATCCGCCAAGAAGG
TTTTTTTCATAATGTACCTAACATTCCATTTGCTTTAGTGTGCACAAATA
TCTGTTTTTTCCCCCACAATGCTTGCATATTTTAAACATAATATATgctg
ttgaaaagataattcagagcaccaaattttatgaaaagtaattaaaaatt
ttttagaaaatgatgatgaaaactgaagaagaagaaaatgagtCTTTTAT
TAATTACTGCtagaaacttgattttttgttCAGTGGTACTTTGAAGCCTC
TTGATTTCAGGCTTACAATTATTTCTACATAGAATTATAACATAGAAAGC
TCTAGGCCTTATATGGCcatatactcttaggtgccaaataaacggggggN
ccgtttatttggcacctaagagtatggTTGTACTTTGGAAGGAAAGAACA
GTTTACCTTCGATTCAAGAACTTTATTGGGGAAATACTAGTTTATGGCTG
AAAGCAAATGTACTTATCTTTTTATTGCTTTCTTCATTTATCTTTCATAT
CAACGCCAGGAACAAACACTGCAGACCTTTGCCGTAACAGAAAAGATGAA
ACAAGACTCTCAAATCCGAACAGTTGTTCGTCATATTTTTTTTGCAAGCA
CGGGCAAACGACAATCATGAACTGTCCACCAGTAACATTGTATGATGAGA
CCTATGGATGTATTCATGAAACACGTGTTGATTGCTCAGCATCAGGTAAT
TAATCTAATATTTGCGTGCTCATTCAGATACACAAGTCATAAGTCACAAG
TCTGACTTTTAAGCAAATTTTATCAGTGAGGGTTGAAGGAATCTGCTGAT
CTCANAATCTAATATTTGCGTGCTCATTCAGATACACAAGTCATAAGTCA
CAAGTCTGACTTTTAAGCAAATTTTATCAGTGAGGGTTGAAGGAATCCAC
TGATCTCAAGTCTCTTATATTATTATTGGAGAGTTTTCGATTGGTTTAAC
TGGTTTGGGGGGTTTTGGGCCATATTGAAAGTTTTATTCCCCCCAAGAGT
TGAGATTTCAATTAGGACAATGGACTATTATAGACTCTATTATTTTAATT
GATTCAGTTGTTTTCTTCCTTTATTTTAGCAAGAAGTCGACAACCAGTCA
CGCAGCCACGTAAATATTTTATTCATCTCATTGCCTAAATTGACCGAGTC
TGTTCATTGGCACGTTACAATTGGTTGCAAGGGAATAGTTTTGATAGTCT
TTTTTGTTTAGCGCAGGTTTTCGTACATGGGACCATTTTCCCTTATTCCC
TGgtctgaattgcagacctctacaaGACCGCAGAAGCACGAAACCGTTAG
TGCATGTCAGTAGCCTAATTAATCCCATGTCAAAGATAAAATTCTTTTGA
GCctgttgaaaaagaaaaaagaaaaaacatactTGAAAATCGACATTAAG
AAATGCTGAATTTACAGAGGGGTTGGGCTACGGGAATTCAAAAAGGTGAT
GATGATCATTTTTGAGCAACTCCTTTTTGTCTTTACAGTCTCAAGTGATT
TAAAATTTGATCTCTAACATAGATTTAAGAGTAAACAATTCCGTCTTCAG
ATAGAAGCTAGATAGAAGCGATTAAATTCAAACCATAGCTACGGGTAATA
CCCTCATCAATCAAATGATAATGATATGGACCCTGGTgataaaaacaccc
ctgtctcagtgccccggtggcatgatttcagtacatgatttttttcagta
catggtttcagtacatgattttttcctacgtcactgcagtaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
tactgaaaccatgtactgaaaaaaatcatgtactgaaatcatgccaccgg
ggcactgagacaggggtgtataaaatTAATAGTGTTTAATAGCACTTGAG
TTATCTCCTGATTATTTCTCGAGTTTAACCAAtccaagaagtttttttca
taatgtaCTTAACATTCCATTCGCTCTGTTTTGTTTAGTATACTTTAACA
TTTCAAACATAATGCAGTATACGGCCCCCAAAACTGAGACGGCCAcattt
gggggccacatactgtatatgccgttgaaaagataattcagagcaccAAA
CTTGTAACTTTTTCCTAGTAGTTATAATCTTATAATGCTCTGAAATTATC
TTTTGAACAGTATATAATACGTTATAATTtaagtatttctttaaaaatgg
aAAGTAAATCAAAGatgcagtagcgtagacaggggtgaagTAACATTTGC
ATAGGAGAGCAGATTAAAAGGACACAGTAATAATGTTTTATACTGTGAAC
AAGTAATTACTTTAACGTAAAAAGCAGCTCTCCTACGCAGATTGTTCTTt
acccctgtctacgctactggaaGAAAgcaaattaactttttttaaatgat
tttttcatttatctttcATATCAAAACCAGGAAAAAACACTGCAGACATT
TGCCGTGGCATAAATGATGGAGCAAAACAAATAAACCCTAACACTTGTTC
ATCATATATTGTTTGCGAGCACAGCCGACCGACAATCATATACTGTCGAT
CAGGAACTTTGTATGATAGGGACTCTCGTAGATGTATTCATGAAACACGT
GTTCGATGCTCACTATCAGGTAATTAATCTGATATTTGCGCGCTCGTTCA
GACCATAATCCATAtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015978-exon-sc0000224-1491911889:213616..213639 | TCONS_00015978-exon-sc0000224-1491911889:213616..213639 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1510915933:213616..213639 | TCONS_00015978-exon-sc0000224-1510915933:213616..213639 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1575043694:213616..213639 | TCONS_00015978-exon-sc0000224-1575043694:213616..213639 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1491911889:214775..214960 | TCONS_00015978-exon-sc0000224-1491911889:214775..214960 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1510915933:214775..214960 | TCONS_00015978-exon-sc0000224-1510915933:214775..214960 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1575043694:214775..214960 | TCONS_00015978-exon-sc0000224-1575043694:214775..214960 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1491911889:215345..215374 | TCONS_00015978-exon-sc0000224-1491911889:215345..215374 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1510915933:215345..215374 | TCONS_00015978-exon-sc0000224-1510915933:215345..215374 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1575043694:215345..215374 | TCONS_00015978-exon-sc0000224-1575043694:215345..215374 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1491911889:217496..217731 | TCONS_00015978-exon-sc0000224-1491911889:217496..217731 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1510915933:217496..217731 | TCONS_00015978-exon-sc0000224-1510915933:217496..217731 | Clytia hemisphaerica | exon |
| TCONS_00015978-exon-sc0000224-1575043694:217496..217731 | TCONS_00015978-exon-sc0000224-1575043694:217496..217731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000224 | supercontig | sc0000224:213616..217731 + |
Blast
The following BLAST results are available for this feature:
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