TCONS_00015977 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015977
Unique Name	TCONS_00015977
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	261

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000224:211477..217731+

transcript sequence

>TCONS_00015977 ID=TCONS_00015977|Name=TCONS_00015977|organism=Clytia hemisphaerica|type=transcript|length=261bp
GGTCGACAACCAGTCACGCAGCCACGAACAAACACTGCAGACCTTTGCCG
TAACAGAAAAGATGAAACAAGACTCTCAAATCCGAACAGTTGTTCGTCAT
ATTTTTTTTGCAAGCACGGGCAAACGACAATCATGAACTGTCCACCAGTA
ACTTTGTATGATAGGGACTCTCGTAGATGTATTCATGAAACACGTGTTCG
ATGCTCACTATCAGGTAATTAATCTGATATTTGCGCGCTCGTTCAGACCA
TAATCCATAtt

Run BLAST on NCBI

transcript from alignment at sc0000224:211477..217731+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015977 ID=TCONS_00015977|Name=TCONS_00015977|organism=Clytia hemisphaerica|type=transcript|length=6255bp|location=Sequence derived from alignment at sc0000224:211477..217731+ (Clytia hemisphaerica)
GGTCGACAACCAGTCACGCAGCCACGTAAATACTTTATTCATCTCATTGC
CTAACTTTAAGCGGAGGAAAGTACCGGTAGATATTGACCGAGTCTGTTCA
TTGGCACGTTACAATTGGTTGCAAGGGAATAGTTTTGATAGTCTTTTTTG
TTTAGCGCAGGTTTTCGTACATGGGATCGTTTTCCCTTATTCCCTGgtct
gaattgcagacctctacaaGACCGCAGAAGCACGAAACGGTTAGTGTATG
CCAGTAGCCTACTTCATCCCATAAAATTCTTTTGAGCCTGTTGaaacaga
aaagagaaaaaaacatacTTGAAAATCGACATTAAGAAATGCTGAATTTA
CAGACGGGTTGGGCTACGGGAACTCAAAAAGGAATTGATGGTCATTTTTG
AGCAACTCCTTTTTGTCTTTACAGTCTCAAGTGATTTAAAATTTGATCTC
TAACATAGATTTAAAGGTAAACAATTCCGTCTTCAGAAAACCGCCAGATA
GAAGCGATTAAATTCAAACCATAGCTACAGGTATTATCCTCATCAATCAA
ATGATAATGATATGGATCCTGGGAATAAAGTTAATAGGGTTTTAATAGCA
TTTAAGGTATCTCCTGATTATTTCTCGAGTTTGACCAATCCGCCAAGAAG
GTTTTTTTCATAATGTACCTAACATTCCATTTGCTTTAGTGTGCACAAAT
ATCTGTTTTTTCCCCCACAATGCTTGCATATTTTAAACATAATATATgct
gttgaaaagataattcagagcaNAGGTTTTCGGCCAGattgagtttttta
ttttccctGAGAGTTGAGATAATTAGGACAGTGAATCAATGTTTCagttg
ttttctttctttttttagcgACAACACGACAACCAGTCACACAACCACgt
aaatattttattgttcatgTCATTGCCTAATTCTAGNATTGACCGAGTCT
GTTCATTGGCACGTTACAATTGGTTGCAAGGGAATAGTTTTGATAGTCTT
TTTTGTTTAGCGCAGGTTTTCGTACATGGTTTAGTGTGCACAAATATCTC
TTTTTTCCCCCACAATGCTTGCATATTTTAAACATAATATATgctgttga
aaagataattcagagcgccaaattttatgaaaagtaattaaaaatttttt
agaaaatgatgatgaaaactgaagaagaagaaaatgagtCTTTTATTAAT
TACTGCtagaaacttgattttttgttCAGTGGTACTTTGAAGCCTCTTGA
TTTCAGGCTTACAATTATTTCTACATAGAATTATAACATAGAAAGCTCTA
GGCCTTATATGGCcatatactcttaggtgccaaataaNACCtggtgtgcc
acaaataagttaccctctttgattaGATATTAtaggcagtagaaaagaga
tttttcaaagattgtttcgaAATCATTCAGatgaaagcctaacttaaaat
ttggtgtattactttttaattttacttcattggttcaaaagttatgttga
aaaacctaaaatgtcaattttaaaaaatgtcaaaaaaggtgAATAAGCAA
GGAATAATTACTTTATCGTAAAAATGCTCTCCTACGCAGATTGTTCTTTA
CctctgtctacgctactggaaTAGTGCAAAGAAAAAGCAAATGTACTTAT
CTTTTTATTGCTTTCTTCATTTATCTTTCATATCAACGCCAGGAACAAAC
ACTGCAGACCTTTGCCGTAACAAAAACGATGGAACAAGACTCTCAAATCC
AAACAGTTGTTCGTCATATATTGTTTGCACGCACAGGCGAGCGACAATCA
TGAACTGTCCACCAAGAACATTGTATGATAGGAACTCTCGTAGATGTGAT
CATGAAAGACTCGTTCGATGCTCAGCACCAGGTAATTAATCTTATATTTG
CGTGCTCGTTCAGATACACAAGTAAATGACACGAGTGTgacttttgagca
aatttaaTCACTTGATCCAATAGAGTTTTCACAGGACGACCTTTCTTTGT
ATTATTGATTGGTTTAACTGGTTAAGGGGATTTAGGCCACATTGACTGTT
TATTTTTCCTGAGAGTTGAGATTTCAATTAGGACAATGGACTATTATTTT
AATTGATTCAGTTGTTTTCTTCCTTTATTTTAGCAAGAGGTCGACAACCA
GTCACGCAGCCACGTAAATACTTTATTCATCTCATTGCCTAACTTTAAGC
GGAGGAAAGTACCGGTAGATATTGACCGAGTCTGTTCATTGGCACGTTAC
AATTGGTTGCAAGGGAATAGTTTTGATAGTCTTTTTTGTTTAGCGCAGGT
TTTCGTACATGGGATCGTTTTCCCTTATTCCCTGgtctgaattgcagacc
tctacaaGACCGCAGAAGCACGAAACGGTTAGTGTATGCCAGTAGCCTAC
TTCATCCCATAAAATTCTTTTGAGCCTGTTGaaacagaaaagagaaaaaa
acatacTTGAAAATCGACATTAAGAAATGCTGAATTTACAGACGGGTTGG
GCTACGGGAACTCAAAAAGGAATTGATGGTCATTTTTGAGCAACTCCTTT
TTGTCTTTACAGTCTCAAGTGATTTAAAATTTGATCTCTAACATAGATTT
AAAGGTAAACAATTCCGTCTTCAGAAAACCGCCAGATAGAAGCGATTAAA
TTCAAACCATAGCTACAGGTATTATCCTCATCAATCAAATGATAATGATA
TGGATCCTGGGAATAAAGTTAATAGGGTTTTAATAGCATTTAAGGTATCT
CCTGATTATTTCTCGAGTTTGACCAATCCGCCAAGAAGGTTTTTTTCATA
ATGTACCTAACATTCCATTTGCTTTAGTGTGCACAAATATCTGTTTTTTC
CCCCACAATGCTTGCATATTTTAAACATAATATATgctgttgaaaagata
attcagagcaccaaattttatgaaaagtaattaaaaattttttagaaaat
gatgatgaaaactgaagaagaagaaaatgagtCTTTTATTAATTACTGCt
agaaacttgattttttgttCAGTGGTACTTTGAAGCCTCTTGATTTCAGG
CTTACAATTATTTCTACATAGAATTATAACATAGAAAGCTCTAGGCCTTA
TATGGCcatatactcttaggtgccaaataaacggggggNccgtttatttg
gcacctaagagtatggTTGTACTTTGGAAGGAAAGAACAGTTTACCTTCG
ATTCAAGAACTTTATTGGGGAAATACTAGTTTATGGCTGAAAGCAAATGT
ACTTATCTTTTTATTGCTTTCTTCATTTATCTTTCATATCAACGCCAGGA
ACAAACACTGCAGACCTTTGCCGTAACAGAAAAGATGAAACAAGACTCTC
AAATCCGAACAGTTGTTCGTCATATTTTTTTTGCAAGCACGGGCAAACGA
CAATCATGAACTGTCCACCAGTAACATTGTATGATGAGACCTATGGATGT
ATTCATGAAACACGTGTTGATTGCTCAGCATCAGGTAATTAATCTAATAT
TTGCGTGCTCATTCAGATACACAAGTCATAAGTCACAAGTCTGACTTTTA
AGCAAATTTTATCAGTGAGGGTTGAAGGAATCTGCTGATCTCANAATCTA
ATATTTGCGTGCTCATTCAGATACACAAGTCATAAGTCACAAGTCTGACT
TTTAAGCAAATTTTATCAGTGAGGGTTGAAGGAATCCACTGATCTCAAGT
CTCTTATATTATTATTGGAGAGTTTTCGATTGGTTTAACTGGTTTGGGGG
GTTTTGGGCCATATTGAAAGTTTTATTCCCCCCAAGAGTTGAGATTTCAA
TTAGGACAATGGACTATTATAGACTCTATTATTTTAATTGATTCAGTTGT
TTTCTTCCTTTATTTTAGCAAGAAGTCGACAACCAGTCACGCAGCCACGT
AAATATTTTATTCATCTCATTGCCTAAATTGACCGAGTCTGTTCATTGGC
ACGTTACAATTGGTTGCAAGGGAATAGTTTTGATAGTCTTTTTTGTTTAG
CGCAGGTTTTCGTACATGGGACCATTTTCCCTTATTCCCTGgtctgaatt
gcagacctctacaaGACCGCAGAAGCACGAAACCGTTAGTGCATGTCAGT
AGCCTAATTAATCCCATGTCAAAGATAAAATTCTTTTGAGCctgttgaaa
aagaaaaaagaaaaaacatactTGAAAATCGACATTAAGAAATGCTGAAT
TTACAGAGGGGTTGGGCTACGGGAATTCAAAAAGGTGATGATGATCATTT
TTGAGCAACTCCTTTTTGTCTTTACAGTCTCAAGTGATTTAAAATTTGAT
CTCTAACATAGATTTAAGAGTAAACAATTCCGTCTTCAGATAGAAGCTAG
ATAGAAGCGATTAAATTCAAACCATAGCTACGGGTAATACCCTCATCAAT
CAAATGATAATGATATGGACCCTGGTgataaaaacacccctgtctcagtg
ccccggtggcatgatttcagtacatgatttttttcagtacatggtttcag
tacatgattttttcctacgtcactgcagtaaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtactgaaacca
tgtactgaaaaaaatcatgtactgaaatcatgccaccggggcactgagac
aggggtgtataaaatTAATAGTGTTTAATAGCACTTGAGTTATCTCCTGA
TTATTTCTCGAGTTTAACCAAtccaagaagtttttttcataatgtaCTTA
ACATTCCATTCGCTCTGTTTTGTTTAGTATACTTTAACATTTCAAACATA
ATGCAGTATACGGCCCCCAAAACTGAGACGGCCAcatttgggggccacat
actgtatatgccgttgaaaagataattcagagcaccAAACTTGTAACTTT
TTCCTAGTAGTTATAATCTTATAATGCTCTGAAATTATCTTTTGAACAGT
ATATAATACGTTATAATTtaagtatttctttaaaaatggaAAGTAAATCA
AAGatgcagtagcgtagacaggggtgaagTAACATTTGCATAGGAGAGCA
GATTAAAAGGACACAGTAATAATGTTTTATACTGTGAACAAGTAATTACT
TTAACGTAAAAAGCAGCTCTCCTACGCAGATTGTTCTTtacccctgtcta
cgctactggaaGAAAgcaaattaactttttttaaatgattttttcattta
tctttcATATCAAAACCAGGAAAAAACACTGCAGACATTTGCCGTGGCAT
AAATGATGGAGCAAAACAAATAAACCCTAACACTTGTTCATCATATATTG
TTTGCGAGCACAGCCGACCGACAATCATATACTGTCGATCAGGAACTTTG
TATGATAGGGACTCTCGTAGATGTATTCATGAAACACGTGTTCGATGCTC
ACTATCAGGTAATTAATCTGATATTTGCGCGCTCGTTCAGACCATAATCC
ATAtt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008926	XLOC_008926	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015977-exon-sc0000224-1491911889:211477..211501	TCONS_00015977-exon-sc0000224-1491911889:211477..211501	Clytia hemisphaerica	exon
TCONS_00015977-exon-sc0000224-1510915933:211477..211501	TCONS_00015977-exon-sc0000224-1510915933:211477..211501	Clytia hemisphaerica	exon
TCONS_00015977-exon-sc0000224-1575043694:211477..211501	TCONS_00015977-exon-sc0000224-1575043694:211477..211501	Clytia hemisphaerica	exon
TCONS_00015977-exon-sc0000224-1491911889:214775..214901	TCONS_00015977-exon-sc0000224-1491911889:214775..214901	Clytia hemisphaerica	exon
TCONS_00015977-exon-sc0000224-1510915933:214775..214901	TCONS_00015977-exon-sc0000224-1510915933:214775..214901	Clytia hemisphaerica	exon
TCONS_00015977-exon-sc0000224-1575043694:214775..214901	TCONS_00015977-exon-sc0000224-1575043694:214775..214901	Clytia hemisphaerica	exon
TCONS_00015977-exon-sc0000224-1491911889:217623..217731	TCONS_00015977-exon-sc0000224-1491911889:217623..217731	Clytia hemisphaerica	exon
TCONS_00015977-exon-sc0000224-1510915933:217623..217731	TCONS_00015977-exon-sc0000224-1510915933:217623..217731	Clytia hemisphaerica	exon
TCONS_00015977-exon-sc0000224-1575043694:217623..217731	TCONS_00015977-exon-sc0000224-1575043694:217623..217731	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000224	supercontig	sc0000224:211477..217731 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.02789	0	0	0.689083	0.157592	0.925835	0	0	3.27563	0	0	0	0	0	0	1.38539e-08	2.57176	0	0	0	0.553579	0.476443	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00015977 vs. Swiss-Prot (Human)

BLAST of TCONS_00015977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00015977 (transcript) - C. hemisphaerica