TCONS_00015976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015976
Unique NameTCONS_00015976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015976 ID=TCONS_00015976|Name=TCONS_00015976|organism=Clytia hemisphaerica|type=transcript|length=483bp
GCAAGAGGTCGACAACCAGTCACGCAGCCACGAACAAACACTGCAGACCT
TTGCCGTAACAGAAAAGATGAAACAAGACTCTCAAATCCGAACAGTTGTT
CGTCATATTTTTTTTGCAAGCACGGGCAAACGACAATCATGAACTGTCCA
CCAGTAACATTGTATGATGAGACCTATGGATGTATTCATGAAACACGTGT
TGATTGCTCAGCATCAGCAAGAAGTCGACAACCAGTCACGCAGCCACGAA
AAAACACTGCAGACATTTGCCGTGGCATAAATGATGGAGCAAAACAAATA
AACCCTAACACTTGTTCATCATATATTGTTTGCGAGCACAGCCGACCGAC
AATCATATACTGTCGATCAGGAACTTTGTATGATAGGGACTCTCGTAGAT
GTATTCATGAAACACGTGTTCGATGCTCACTATCAGGTAATTAATCTGAT
ATTTGCGCGCTCGTTCAGACCATAATCCATAtt
Run BLAST on NCBI

transcript from alignment at sc0000224:211471..217731+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015976 ID=TCONS_00015976|Name=TCONS_00015976|organism=Clytia hemisphaerica|type=transcript|length=6261bp|location=Sequence derived from alignment at sc0000224:211471..217731+ (Clytia hemisphaerica)
GCAAGAGGTCGACAACCAGTCACGCAGCCACGTAAATACTTTATTCATCT
CATTGCCTAACTTTAAGCGGAGGAAAGTACCGGTAGATATTGACCGAGTC
TGTTCATTGGCACGTTACAATTGGTTGCAAGGGAATAGTTTTGATAGTCT
TTTTTGTTTAGCGCAGGTTTTCGTACATGGGATCGTTTTCCCTTATTCCC
TGgtctgaattgcagacctctacaaGACCGCAGAAGCACGAAACGGTTAG
TGTATGCCAGTAGCCTACTTCATCCCATAAAATTCTTTTGAGCCTGTTGa
aacagaaaagagaaaaaaacatacTTGAAAATCGACATTAAGAAATGCTG
AATTTACAGACGGGTTGGGCTACGGGAACTCAAAAAGGAATTGATGGTCA
TTTTTGAGCAACTCCTTTTTGTCTTTACAGTCTCAAGTGATTTAAAATTT
GATCTCTAACATAGATTTAAAGGTAAACAATTCCGTCTTCAGAAAACCGC
CAGATAGAAGCGATTAAATTCAAACCATAGCTACAGGTATTATCCTCATC
AATCAAATGATAATGATATGGATCCTGGGAATAAAGTTAATAGGGTTTTA
ATAGCATTTAAGGTATCTCCTGATTATTTCTCGAGTTTGACCAATCCGCC
AAGAAGGTTTTTTTCATAATGTACCTAACATTCCATTTGCTTTAGTGTGC
ACAAATATCTGTTTTTTCCCCCACAATGCTTGCATATTTTAAACATAATA
TATgctgttgaaaagataattcagagcaNAGGTTTTCGGCCAGattgagt
tttttattttccctGAGAGTTGAGATAATTAGGACAGTGAATCAATGTTT
CagttgttttctttctttttttagcgACAACACGACAACCAGTCACACAA
CCACgtaaatattttattgttcatgTCATTGCCTAATTCTAGNATTGACC
GAGTCTGTTCATTGGCACGTTACAATTGGTTGCAAGGGAATAGTTTTGAT
AGTCTTTTTTGTTTAGCGCAGGTTTTCGTACATGGTTTAGTGTGCACAAA
TATCTCTTTTTTCCCCCACAATGCTTGCATATTTTAAACATAATATATgc
tgttgaaaagataattcagagcgccaaattttatgaaaagtaattaaaaa
ttttttagaaaatgatgatgaaaactgaagaagaagaaaatgagtCTTTT
ATTAATTACTGCtagaaacttgattttttgttCAGTGGTACTTTGAAGCC
TCTTGATTTCAGGCTTACAATTATTTCTACATAGAATTATAACATAGAAA
GCTCTAGGCCTTATATGGCcatatactcttaggtgccaaataaNACCtgg
tgtgccacaaataagttaccctctttgattaGATATTAtaggcagtagaa
aagagatttttcaaagattgtttcgaAATCATTCAGatgaaagcctaact
taaaatttggtgtattactttttaattttacttcattggttcaaaagtta
tgttgaaaaacctaaaatgtcaattttaaaaaatgtcaaaaaaggtgAAT
AAGCAAGGAATAATTACTTTATCGTAAAAATGCTCTCCTACGCAGATTGT
TCTTTACctctgtctacgctactggaaTAGTGCAAAGAAAAAGCAAATGT
ACTTATCTTTTTATTGCTTTCTTCATTTATCTTTCATATCAACGCCAGGA
ACAAACACTGCAGACCTTTGCCGTAACAAAAACGATGGAACAAGACTCTC
AAATCCAAACAGTTGTTCGTCATATATTGTTTGCACGCACAGGCGAGCGA
CAATCATGAACTGTCCACCAAGAACATTGTATGATAGGAACTCTCGTAGA
TGTGATCATGAAAGACTCGTTCGATGCTCAGCACCAGGTAATTAATCTTA
TATTTGCGTGCTCGTTCAGATACACAAGTAAATGACACGAGTGTgacttt
tgagcaaatttaaTCACTTGATCCAATAGAGTTTTCACAGGACGACCTTT
CTTTGTATTATTGATTGGTTTAACTGGTTAAGGGGATTTAGGCCACATTG
ACTGTTTATTTTTCCTGAGAGTTGAGATTTCAATTAGGACAATGGACTAT
TATTTTAATTGATTCAGTTGTTTTCTTCCTTTATTTTAGCAAGAGGTCGA
CAACCAGTCACGCAGCCACGTAAATACTTTATTCATCTCATTGCCTAACT
TTAAGCGGAGGAAAGTACCGGTAGATATTGACCGAGTCTGTTCATTGGCA
CGTTACAATTGGTTGCAAGGGAATAGTTTTGATAGTCTTTTTTGTTTAGC
GCAGGTTTTCGTACATGGGATCGTTTTCCCTTATTCCCTGgtctgaattg
cagacctctacaaGACCGCAGAAGCACGAAACGGTTAGTGTATGCCAGTA
GCCTACTTCATCCCATAAAATTCTTTTGAGCCTGTTGaaacagaaaagag
aaaaaaacatacTTGAAAATCGACATTAAGAAATGCTGAATTTACAGACG
GGTTGGGCTACGGGAACTCAAAAAGGAATTGATGGTCATTTTTGAGCAAC
TCCTTTTTGTCTTTACAGTCTCAAGTGATTTAAAATTTGATCTCTAACAT
AGATTTAAAGGTAAACAATTCCGTCTTCAGAAAACCGCCAGATAGAAGCG
ATTAAATTCAAACCATAGCTACAGGTATTATCCTCATCAATCAAATGATA
ATGATATGGATCCTGGGAATAAAGTTAATAGGGTTTTAATAGCATTTAAG
GTATCTCCTGATTATTTCTCGAGTTTGACCAATCCGCCAAGAAGGTTTTT
TTCATAATGTACCTAACATTCCATTTGCTTTAGTGTGCACAAATATCTGT
TTTTTCCCCCACAATGCTTGCATATTTTAAACATAATATATgctgttgaa
aagataattcagagcaccaaattttatgaaaagtaattaaaaatttttta
gaaaatgatgatgaaaactgaagaagaagaaaatgagtCTTTTATTAATT
ACTGCtagaaacttgattttttgttCAGTGGTACTTTGAAGCCTCTTGAT
TTCAGGCTTACAATTATTTCTACATAGAATTATAACATAGAAAGCTCTAG
GCCTTATATGGCcatatactcttaggtgccaaataaacggggggNccgtt
tatttggcacctaagagtatggTTGTACTTTGGAAGGAAAGAACAGTTTA
CCTTCGATTCAAGAACTTTATTGGGGAAATACTAGTTTATGGCTGAAAGC
AAATGTACTTATCTTTTTATTGCTTTCTTCATTTATCTTTCATATCAACG
CCAGGAACAAACACTGCAGACCTTTGCCGTAACAGAAAAGATGAAACAAG
ACTCTCAAATCCGAACAGTTGTTCGTCATATTTTTTTTGCAAGCACGGGC
AAACGACAATCATGAACTGTCCACCAGTAACATTGTATGATGAGACCTAT
GGATGTATTCATGAAACACGTGTTGATTGCTCAGCATCAGGTAATTAATC
TAATATTTGCGTGCTCATTCAGATACACAAGTCATAAGTCACAAGTCTGA
CTTTTAAGCAAATTTTATCAGTGAGGGTTGAAGGAATCTGCTGATCTCAN
AATCTAATATTTGCGTGCTCATTCAGATACACAAGTCATAAGTCACAAGT
CTGACTTTTAAGCAAATTTTATCAGTGAGGGTTGAAGGAATCCACTGATC
TCAAGTCTCTTATATTATTATTGGAGAGTTTTCGATTGGTTTAACTGGTT
TGGGGGGTTTTGGGCCATATTGAAAGTTTTATTCCCCCCAAGAGTTGAGA
TTTCAATTAGGACAATGGACTATTATAGACTCTATTATTTTAATTGATTC
AGTTGTTTTCTTCCTTTATTTTAGCAAGAAGTCGACAACCAGTCACGCAG
CCACGTAAATATTTTATTCATCTCATTGCCTAAATTGACCGAGTCTGTTC
ATTGGCACGTTACAATTGGTTGCAAGGGAATAGTTTTGATAGTCTTTTTT
GTTTAGCGCAGGTTTTCGTACATGGGACCATTTTCCCTTATTCCCTGgtc
tgaattgcagacctctacaaGACCGCAGAAGCACGAAACCGTTAGTGCAT
GTCAGTAGCCTAATTAATCCCATGTCAAAGATAAAATTCTTTTGAGCctg
ttgaaaaagaaaaaagaaaaaacatactTGAAAATCGACATTAAGAAATG
CTGAATTTACAGAGGGGTTGGGCTACGGGAATTCAAAAAGGTGATGATGA
TCATTTTTGAGCAACTCCTTTTTGTCTTTACAGTCTCAAGTGATTTAAAA
TTTGATCTCTAACATAGATTTAAGAGTAAACAATTCCGTCTTCAGATAGA
AGCTAGATAGAAGCGATTAAATTCAAACCATAGCTACGGGTAATACCCTC
ATCAATCAAATGATAATGATATGGACCCTGGTgataaaaacacccctgtc
tcagtgccccggtggcatgatttcagtacatgatttttttcagtacatgg
tttcagtacatgattttttcctacgtcactgcagtaaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtactg
aaaccatgtactgaaaaaaatcatgtactgaaatcatgccaccggggcac
tgagacaggggtgtataaaatTAATAGTGTTTAATAGCACTTGAGTTATC
TCCTGATTATTTCTCGAGTTTAACCAAtccaagaagtttttttcataatg
taCTTAACATTCCATTCGCTCTGTTTTGTTTAGTATACTTTAACATTTCA
AACATAATGCAGTATACGGCCCCCAAAACTGAGACGGCCAcatttggggg
ccacatactgtatatgccgttgaaaagataattcagagcaccAAACTTGT
AACTTTTTCCTAGTAGTTATAATCTTATAATGCTCTGAAATTATCTTTTG
AACAGTATATAATACGTTATAATTtaagtatttctttaaaaatggaAAGT
AAATCAAAGatgcagtagcgtagacaggggtgaagTAACATTTGCATAGG
AGAGCAGATTAAAAGGACACAGTAATAATGTTTTATACTGTGAACAAGTA
ATTACTTTAACGTAAAAAGCAGCTCTCCTACGCAGATTGTTCTTtacccc
tgtctacgctactggaaGAAAgcaaattaactttttttaaatgatttttt
catttatctttcATATCAAAACCAGGAAAAAACACTGCAGACATTTGCCG
TGGCATAAATGATGGAGCAAAACAAATAAACCCTAACACTTGTTCATCAT
ATATTGTTTGCGAGCACAGCCGACCGACAATCATATACTGTCGATCAGGA
ACTTTGTATGATAGGGACTCTCGTAGATGTATTCATGAAACACGTGTTCG
ATGCTCACTATCAGGTAATTAATCTGATATTTGCGCGCTCGTTCAGACCA
TAATCCATAtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008926XLOC_008926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015976-exon-sc0000224-1491911889:211471..211501TCONS_00015976-exon-sc0000224-1491911889:211471..211501Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1510915933:211471..211501TCONS_00015976-exon-sc0000224-1510915933:211471..211501Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1575043694:211471..211501TCONS_00015976-exon-sc0000224-1575043694:211471..211501Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1491911889:213169..213185TCONS_00015976-exon-sc0000224-1491911889:213169..213185Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1510915933:213169..213185TCONS_00015976-exon-sc0000224-1510915933:213169..213185Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1575043694:213169..213185TCONS_00015976-exon-sc0000224-1575043694:213169..213185Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1491911889:214792..214960TCONS_00015976-exon-sc0000224-1491911889:214792..214960Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1510915933:214792..214960TCONS_00015976-exon-sc0000224-1510915933:214792..214960Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1575043694:214792..214960TCONS_00015976-exon-sc0000224-1575043694:214792..214960Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1491911889:215345..215374TCONS_00015976-exon-sc0000224-1491911889:215345..215374Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1510915933:215345..215374TCONS_00015976-exon-sc0000224-1510915933:215345..215374Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1575043694:215345..215374TCONS_00015976-exon-sc0000224-1575043694:215345..215374Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1491911889:217496..217731TCONS_00015976-exon-sc0000224-1491911889:217496..217731Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1510915933:217496..217731TCONS_00015976-exon-sc0000224-1510915933:217496..217731Clytia hemisphaericaexon
TCONS_00015976-exon-sc0000224-1575043694:217496..217731TCONS_00015976-exon-sc0000224-1575043694:217496..217731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:211471..217731 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	4.54256	0	0	0	0	0	0	0	0.957024	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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