XLOC_005951 (gene) - C. hemisphaerica

Overview
NameXLOC_005951
Unique NameXLOC_005951
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000108:170438..178277+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005951 ID=XLOC_005951|Name=XLOC_005951|organism=Clytia hemisphaerica|type=gene|length=7840bp|location=Sequence derived from alignment at sc0000108:170438..178277+ (Clytia hemisphaerica)
ttttgaaattaaattaaaggTCAAAAGAATCACATCATGGAAGAACCTTC AATGTTAAAACAGAGGCCATCCTCAAGCCATACTCAAGATACTTCTCATA TTATAATGAGCACTTTTCGAGACTTATTCAGTCAAGGTGGTATGCGACAA GATCTAATAGAAAATCTTTCAGTTAGCAAAGGAGGGGAAAATGTGTATCA TGACAAATATGTTGAAAAGCTGCAAAACGTAAGTCACTTTTATTTGAAtg tttgtatattttttcttataattttgctgttcaaaatttctttttaaatt taaataaaaataaaaatcaaataaaagaatgctGTCTAAATGGTACAACT CCATAATTTTAAAGATACCATTTATAGTCTTCAATTGCTGTGATATATTC TGTCGGATATTCTTTTTAAAGTACTTATCAAACAGCACTCTCATTACATC tagattttattgttttctacagtaaaaattgtatattttgttTCGTTGAA TTGTTTATACACTTTGAAAATAAACTATAGAGAAAATGAATATCTTTCAG ATTCATGAGAGATGGGCGACCAAAATTACAGCAATAGATGACATGATTCA ACACCTGGACAAAGCAAAANTGttctaaatttctttttaaatttaaataa aaataaaaatcaaataaaagaatgctGTCTAAATGGTACAACTCCATAAT TTTAAAGATACCATTTATAGTCTTCAATTGCTGTGATATATTCTGTCGGA TATTCTTTTTAAAGTACTTATCAAACAGCACTCTCATTACATCtagattt tattgttttctacagtaaaaattgtatattttgttTCGTTGAATTGTTTA TACACTTTGAAAATAAACTATAGAGAAAATGAATATCTTTCAGATTCATG AGAGATGGGCGACCAAAATTACAGCAATAGATGACATGATTCAACACCTG GACAAAGCAAAAGCACAAGCTCGAATTTTGGAACTTCAAGAAGAAGCTAA AGCTAAAAAGGAATATGCCTTTTATCAAGACCTTGGCTTACCTTCAGGTT TCTTGGtctctttttctctattttagATGATGACTTTAGCTTTCAAACAT AACCTGTATTGGAATTACTGACTTATAATTTTCTGAATGgcatatttttt tccttttagttCCATCAAGATTAAACCATTTTTTGAATTGTAAGCGTCTT CGAGAAAATGGTCTTGTTGTGCCAAATGAGTTTTTGGACTACAAAAGTGA ACCTATAGCTATTGAAGAATCTGGTAAGTGTTTTTGACAACCTTCAAATt ctatgatttttaaaaatctatatTTCAGAAGCTGTaaaggccagggcaaa ccagtccaacatttcattCATAATGATGTCATTTTTcgaaatgttggatg aaatgttggaccggtttgtgccaatgtaaaattttcaaaaataaaggaaa aaggagaaaaaaatcatttgatccaacattcgaaactaattgtttttagt ttttcatcaAAGATTTCATCCAACATAATATtagatgaaatgttggactg gtttgccCTGGTGAAGACGAGTAGAAACTGTATCaatcaaattatatttt taaagggTCAATAAGTGATAATTCTATTTAGTGATACCAAGGAGCTACAT TACTACCAACCATCTAAAATTCATTTAAtaatttaattataattttaGTG GAGCAAGCAATACCACAATATGCAAGCTCAACATTTTCATCACGTCAACA ATTCGATAAATTACCAAAAGATGATAATTATTTGCCAAAACCTGAACCAA TTctaccaaaattatcaaaagttGGATCTGAGGACACAAAAATTCAGACT CGAAAATCTCAAGTATGTtgtgaaattttgatttgacgTTTTAAAAGTTG GTGTCATCTCCATAGATCTCtataatgttttcatttttcttcagcTTCAG TTTTCATATAAATAACCAGAATGTTAATGGAACCTATTCTGGGGCTGATA TTTCCataaaaggaagattttagtcaaattagttttcagctagtattttt tgaaacaaaGAAGACTTTTAAAGCTCAAGATTAGATTTCTAAGTTGATGT TTCTGTTTTCAAACACTTATTCTGTTTCCAGGCCTTAGCATCGAGGAGTG AAAAAAATGTTTGGAGAAAATGTCTTCCACCAAAGCAACGTGAAGATGAA AAGAAAGAGATCATGAAATTGCAACAGAGAGCAGACTTTTTGAAGAATCC TAGGTTCTTGTCGGATCCAAGATCACTTGTAAAAACTTTTAAGAAGGATG CTGTGGCTACTATAAGGTGAACTGTTTATCACAAACTAATTGTTAAGTAT AAAAGTATATTTCGTATAATATATGGgttgttccattaaatttctaTACA GGGTGGCCGAACATTGtcaagtcaaaaaaagattctaaGAAATATGTGGA TactccctggaaaatggcaGAATTTACAAGAGATTACTGGAATCGTCAAT AAATGTTGCTTTAATTTTCTAAATCatgattttttacttgaaagtttttt ttccagGCACGAAGAAAGTTATTTCCAAGCGAACCCTCATCCTGTATTAT TCAATGGTTATGAAGTTGGATTCTCATACCAGGTATTGTATTCATCATTG CATGCCAATTAGGTGTCGCAGTGCGAATCTGATAGTAGTTGGTAGGGCCT TGATATATTGAAGTCCCTAGAAACCTGATTTTTCTTCCTGTCCATTCTTG TCTCTATCCTAAAAGCTTTCTAGGGATTCAGCTTTTTGCtctgatttttt attatcaCGTACTCCATCTACTGTAATTGGGCAAACTGTTGTTATTTCGA CAAAGACATCAATACACAAGGCTATAATAATATTATAAGGAACCTCCAAT TCAACAAAATCCAGCATGATATTTCAGGATAATATAAAAAAGATTCTCAT TCAGCTTAAAATCTTGATTGGTTATTCAATTTAATGGGTTATAAATagac aattctttttttttagctaAAGTTGGAATTGAAGAACATAACGGCAGCAT CAAGACAATTGCGTCTGATCGAACCCAAAACAAATTACTTCTCTTTGAAA ATGGGTAAACTTCTGTTTTTTGTTATAAACGATTCCACCTAATGATAATG GATCTGGAATGATTATTGATTGGTTTGATAATTCAACTTCAAAGCATTTT AGCACCATCATGGAGATCATTCTGAATTTATTATTATACTGAAAAGGGTA TTTACATATTAGTTAATAATATACATGATCATGAAGaaaatctcttaaaa acaagctaGTATTCATCAGTAAGTTATTGTTAAAAGGGACGATGAGATAG TTTAATATAATTGGCATGTGGATTCTTTATGGTGCAAaacgtcaaaatat ttttgtctagttcaaagttcaaaaacgctaaatttaattcccgcaaaaat tagttccgatAACGTAGattcaacgtaagaaccgtaAGAAGCCATTCTTA GAAATGATCCTTTGAGGTTTTACTTAGGATCACGGATGGTTTCTATAGGC CAAGGATCATCCAAACCATCAATCAATTTCAATCTTCTTTACCTTTTTCA GGAGATTTTCCATCCACGAATGGGCTGGTTGCACCTGGAATGAGTTGTAC TTTCACTATCCAATTTACACCAGAAACTTTGGAAGATTATAATGACCAGA TTGAGGTGATCAAGTCGTCTTTCAATTGAACAATATTATAATTATTAGTT GAATGAATGTGATTATAAAATGTGTTACATAATTAGGAATTaatgaaata taaaatttttagactgaaaaaaaacaagaattgtattatgtatttatttt aaaattgtctGGTTCTACTTTAACTGGAAGATGTCAAGGATTAATGCCTT GGAGCCCATGCATGAAATTAAACTATAGAAACTCTAGAcatgttatgttt ttatataggaATATGAAAGCCTATCAGAAAATCATcccaaataaaataga aatatgtgtttccaaaaatattttctctgttTCATTTAGGTGAAGACAAT GGGTGAAGGATCACTTGTTATCCCCCTTCAAGGGCGAAGAAAACCTCCAA TATTGAACTGtaagtgtttttaatgaaagCTAGAGTCTTCTTTATTATCC TCAACTATTAGCAATTTCCTCATAACTTTTCTTATACGATTTTTATGAAA GTTGTAAAAGATAATCTATTGGACGATTTCAATCGACATTTTATCCCTTA CAAAAGACTTGGTAAATTTATCTCTGTTCTAAAGGGATCTGAATGTGACT TATATTCGTTTAAAGTCCTTCaatcttttaaatttgatcattcttttaaa tttaattttgtgcTGTCTGCACAAATGCTTAAGAAAACTGAANttttttt aaatttaattttgtgcTGTCTGCACAAACGCTTAAGAAAACTGAGAAATC TTTAAAACTTCTCAATACTCATTCCAAAAAATAATATAGTACCCGATGAG ATCAACTGTGGCCACTGTCTTGTTGGAGATGTGAAAACCAAAGACTTTGT GGTTCAAAACACTGGTGGTCTTGGTAGATTctgttttatcaatgctgatg aAGTGAACACAACCCACATAGATTGGGACCAGGTTTGTTTTTCAATCTTT CTTGAATGATGATTTGCAAGTGTAaaatagaccagcggccgaggtagtga attgtgtcacttcgtagggcaccccttagatcagggcaaatttttaatat tattctcctaatagggtgtagaattgataaaaaaaatttgcccttcgaat ctcttgcagttttcgagtgaatcgatttttagttaatcgatagaacttat cacgggtcccccctttactaacggttttttcgaagtctgaaaatcaaata tctgaggctgccaacggattcagcgtgaaaagtagataaagataatgggg ttatttgttaagattcgaccacctggtgcctagaaatggcatttttaagg cgaaaaatcgacgtttttggcgttttccgatgacgtcagcatttttctgg gagcattttcagaaaaaatcattcccacagctggatagccctgaattagt agtatccgaaaatggtatggtttgttaactttcgatgttcCGATCATCTA AAACATGTAAGTCAACAGTCAATACACACTTCTCGAGATAAATCAACAGC ATTGCGGGCCCCGATTTCAAATGAAATACTACTTcgaatatttttctatt ttaatgattttcctaattagagtcataaaatttgttcatgaaatCGTTTG TATCTTTTCTTTTATAGCTTGATTATGATTCTAAAGAAGGTTTACTGATG ACGAATTTCATCATTTCACCAAGGATCTTCTCCCTTCAAGAAAATGAATC AGTCATCATAAAGGTACCTTGTATTTCAATAGCTCTATTTTCACAGAGTC TCGTCAAAGTAGAGTcaactctctttaattcgatcttAAATCAAGAAGTG TTTAGAATATAAAAATTAAAGTccattcacgataagtgtgcactcttttt tcatttacctataacttttgaaggaattcttcagcctttataaatttggt attattggaaagatattagtgagtggaacaatttgaaataaaaaaaactt taaaaagattataaaaatgaagatgaaaatgaagaaNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa tcttcatttttttcttcttcattttcatcttcatttttagaatttttttg aagatttttttattttaaattgttccactcactaatatcttttcaatgac ATCAAAtctataaagattgaagaattccttcaaaagttataggtaaaaga aaaaagagtgcacacttatcgtgaatagactttaagaacagtccagcctg agccaaaatttactagttcttataaaataaagtgaGTGCAGTTAATTAAA GATAATCCTTTTGCAATAAGGTTAAATCTGTTAAATTTAATCTGTACGGA TGTAATCATTATCGTCATTATACCCTTATTATTTTTAGGTTGTGTTTTCT CCCGAAGGTGTGAAGTCTTTCTTGTCAGGCATTGTCTTGCTTTGTGATAA TTGTGTCAAAAATTCACACCACATCATAGGTAAGACACATATCTACTTTC ATGTTTACACAACCGTCATATGTACTGAATCTATGAGAGGTGTTCATTCA TTGGCTTTCCAGAAAAAACTGACAAGGCCCATTTCAATTCTGTGGTGGAA GGTTTAATAAAACACAATGAAATACCAATATTaccaataaaaaacaaaag actGGAATAGGAGACAGCTCTAGTAAATGTCATAACATTTCGGTAGGTGA TCCATCCTTGGGCCATTACTTTTCAACGTATATACCTAAGAgatcttttc tattttctaaatGATACGGCATTGAATTATGCCGATGATACAACCTTTTT CAGTAGTAATGGAAATTCTTGTTAACTAATAGTTATAGggcaaattttgg taaaaaatagaGGAAAATAGAGTACGAAATTATTTCAGTAAGTtcatctt ctttcttttttaggcATAGGTGAGGTAGCTGACATAGAATTGATATCAGT TGAGGGAGGTCTTCATGAACCGATACTGGGTGAGACACAAGACCTCCGAG CTGAACAAATCGTTCGTTTCCAAGAATGTTATCCAGATGTTGTGTACACC AAAACATTACTGATCAAAAATCGCATGTatgttgtttatattttttgtaa cttttaaaatttgactgaagactgcctgaGACGGCACGAAGCTCAGAgta tcggaaaaaaaatttctctctatTCTTGACTGATAAGTCGTTTAtatcaa tacacgttttttatataagaacaaactatataagaacatgaggcttcgat ggccaaaatgttaagaacaagttgagaacattttaaggcttcgtggactc TAAACTGCCAAATGTCTTAGGAAAATAGGTAAAagtggtcacaaaatggt gaaattaaaaacattttaagaacatttttaggcttggagcccaaaaagtt aagaacatccgaaggcttcaaaaactttagaTGCTCCTATAAAAATAACG TTTAAATTCTTAATAATGTCTTTCTTTAAATGTTGGAGTAAAGTAGTTAC GAATCAAAAACGAATAACCAACTTTTATGCGCTTTAGATCAAGGCGTTCT AAATCAATTTCAGGACTACTGAATTTAACTTAAAGGTCGTTTTATTaact tattttctccttttaaaaaaacttcgaaTTTGTTGGACATTGTTGGACTT ATTTTAGACAAATACTAGTAAGATATCTTCGAATCGTTAAGCATTTTGAT AATTGCTTCAGACAAAAACAAAAGACGACCTTTATTGTTTTAAATCAGTA CAGTTTACTCTTGCTGATACGAATTCGGAACGGAATCTaagttgttcgag ttaaagaaagtAATTCAGGACTTTCTCGGGGACTGgaaattagttcgaat taacgCGAGTCTACTGCAGTTTTAAAGGTCATTAATTAAGTCAAATgtta ttttctatatttcagACCAGTACCTATGGATTATGAATGGATCATATCTC CTCCACAAGTCACCAGCAATGCACTGACCATCAACTCTGGTGATGCCATC GAAACATCATCACCATTTCATATTCATCCTTCTTCTGGTGTGTTGGATGA AGAAGCTGAACAATGTTTCCAAATCATCTTTTCACCAACT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010616TCONS_00010616Clytia hemisphaericatranscript
TCONS_00010617TCONS_00010617Clytia hemisphaericatranscript
TCONS_00010618TCONS_00010618Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00010616-proteinTCONS_00010616-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:170438..178277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.64 9.13 7.99 4.64 26.34 27.75 13.67 17.63 11.32 14.87 9.89 12.47 1.89 2.81 2.54 2.48 4.28 3.76 5.19 2.26 2.17 2.38 3.73 3.82 19.28 22.61 6.7 3.89 2.26 2.76