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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010616 ID=TCONS_00010616|Name=TCONS_00010616|organism=Clytia hemisphaerica|type=transcript|length=1851bpRun BLAST on NCBI protein sequence of TCONS_00010616-protein >TCONS_00010616-protein ID=TCONS_00010616-protein|Name=TCONS_00010616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=605bp MEEPSMLKQRPSSSHTQDTSHIIMSTFRDLFSQGGMRQDLIENLSVSKGGRun BLAST on NCBI transcript from alignment at sc0000108:170438..178277+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010616 ID=TCONS_00010616|Name=TCONS_00010616|organism=Clytia hemisphaerica|type=transcript|length=7840bp|location=Sequence derived from alignment at sc0000108:170438..178277+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000108:170438..178277+ >TCONS_00010616 ID=TCONS_00010616|Name=TCONS_00010616|organism=Clytia hemisphaerica|type=CDS|length=25410bp|location=Sequence derived from alignment at sc0000108:170438..178277+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010616 vs. Swiss-Prot (Human)
Match: DLEC1 (Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens GN=DLEC1 PE=2 SV=2) HSP 1 Score: 278.87 bits (712), Expect = 4.689e-80 Identity = 190/641 (29.64%), Postives = 320/641 (49.92%), Query Frame = 1
Query: 43 EPSMLKQRPSSSHTQDTSHIIMSTFRDLFSQGGMRQDLIENLSVSKGGENVYHDKYVEKLQNIHERWATKITAIDDMIQHLDKAKAQARILELQXXXXXXXXXXFYQDLGLPSVPSRLNHFLNCKRLRENGLVVPNEF----LDYKSEPIAIEESVEQAIPQYASSTFSS------RQQFDKLPKDD------NYLPKPEPILPKLSKVGSEDTKIQTRKSQALASRSEKNVWRKCLPPKQREDEKKEIMKLQQRADFLKNPRFLS-----DPRSLVKTFKKDA----VATIRHEES-----YFQANPHPVLFNGYEVGFSYQLKLELKNITAASRQLRLIEPKTNYFSLKMGDFPSTNGLVAPGMSCTFTIQFTPETLEDYNDQIEVKTMGEGSLVIPLQGRRKPPILNLPDEINCGHCLVGDVKTKDFVVQNTG-GLGRFCFINADEVNTTHIDWDQLDYDSKEGLLMTN---FIISPRIFSLQENESVIIKVVFSPEGVKSFLSGIVLLCDNCVKNSHHIIGIGEVADIELISVEGGLHEPILGETQDLRAEQIVRFQECYPDVVYTKTLLIKNRIPVPMDYEW-IISP---PQVTSNALTINSGDAI-ETSSPFHIHPSSGVLDEEAEQCFQIIFSP 1848
EP +L+ RPSS TQD SH++ FR+L+S + ++ +L ++G EN H+++V++LQ I E + ++ + + +H+ +A+A+A I E + + LP V S ++ + LR++ L+ P ++ + + S P I ++P + TFS +++ +K +D + + + + L+ + K +TR+ AS+ W L QRE ++ + +++ R FLKNPRF +SLV KK A + E+S F A P F YE+G Y++ + L+N T SR LR++ P T YF+L +G FP G+VAPGM+C + +QF P+ L D++D I V+T +L+IPLQ RR PP+L L ++CG+CL+G VK F+ +N G +GRFC + W L + + + F I P +F L +++++V+FSP+ + +++CDNC IGIG++ ++LI + G +P GE DL A+ +RF+ K L+I+N V + + W I+ P P + +++S + + F I P GVL + F + FSP
Sbjct: 76 EPQLLRLRPSSLRTQDISHLLTGVFRNLYSAEVIGDEVSASLIKARGSENERHEEFVDQLQQIRELYKQRLDEFEMLERHITQAQARA-IAENERVMSQAGVQDLESLVRLPPVKSVSRWCIDSELLRKHHLISPEDYYTDTVPFHSAPKGI------SLPGCSKLTFSCEKRSVQKKELNKKLEDSCRKKLAEFEDELDHTVDSLTWNLTPKAKERTREPLKKASQPRNKNWMNHLRVPQRELDRLLLARMESRNHFLKNPRFFPPNTRYGGKSLVFPPKKPAPIGEFQSTEPEQSCADTPVFLAKPPIGFFTDYEIGPVYEMVIALQNTTTTSRYLRVLPPSTPYFALGLGMFPGKGGMVAPGMTCQYIVQFFPDCLGDFDDFILVETQSAHTLLIPLQARRPPPVLTLSPVLDCGYCLIGGVKMTRFICKNVGFSVGRFCIM-------PKTSWPPLSFKAIATVGFVEQPPFGILPSVFELAPGHAILVEVLFSPKSLGKAEQTFIIMCDNCQIKELVTIGIGQLIALDLIYISGEKSQPDPGELTDLTAQHFIRFEPENLRSTARKQLIIRNATHVELAFYWQIMKPNLQPLMPGETFSMDSIKCYPDKETAFSIMPRKGVLSPHTDHEFILSFSP 702 The following BLAST results are available for this feature:
BLAST of TCONS_00010616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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