XLOC_004274 (gene) - C. hemisphaerica

Overview
NameXLOC_004274
Unique NameXLOC_004274
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000078:178468..186932+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004274 ID=XLOC_004274|Name=XLOC_004274|organism=Clytia hemisphaerica|type=gene|length=8465bp|location=Sequence derived from alignment at sc0000078:178468..186932+ (Clytia hemisphaerica)
GacaatttttgggaaaaacaaCTTCATACGCAGATTGAACTGAGAAGGTT
GTGGTAAgatcttgttttttttgctcttgGACATCAAGAAACGATGATTC
CCTTTCGAAAAGACATAATAAATAGAGATAACGGGATTTCGCCCCTCTag
gtaggcttctgctcatcctctagtaAAAaggtttcttataggaagtatat
ctatagactTAGAGATCTGTGATTCAAGATCGGTGATTCAGGTTATACCC
TTTAGGCACATTATTTTTGTGTTGAAAAAGCAGTGTAAATaggtcttttc
ataaattacgtcacgaacatcacttgcctcgtattcaaacaattaccatg
gtgattatgttcGTTGAgacataaaatgatttttttatgaatagaaagta
gttttaataaaatccactgggagttaatcactatggcaataatttcaaaa
tgaggcaagtgatgttcgtgacgtaatttatgaaaaggtctatcagtAAA
AGGAGAAATGAGAATGTATAGAATTTCTGTCCAGTCATATGATGTAAATG
TGTTGTCATCAACTGATGACTACTCTCTCTGTAATTGTTGactcattttt
ttaatttgtgtCATTTCTCAAGTTCCAAGAAACTTGAACTAGTAAGAACT
ACAAGGTCATCTTTTACTTtccttttcttttataaaagcaATTTTATAAG
TATAATGAGGCTCAAAGTcgacaaaaaataagaacaaattaagaacaatg
cttAGCCTAGAATTACCCAATTTATgggttaaagtagtaaaaattgggta
aaaaacctaaaatacctcaattacaccctattgaataagaacaggataag
aacaatttgaggctcaaagtgccaaaaataagaacagccggaCGTCAGCa
gaattttactggttcttattaaAAGAAAAGGATGTAATGTATCTCTCAGT
GATACTTTTGGGAGTTGTCTGATGGAATTACTCATCCTCTCACAAATAGT
TTTCAAATACCGTAGCTTTTTGTCTTTAAATCATGCATTTGCCTTACTGT
attggttttgtttttatataagtgttcccgtttcatatcagacacatatt
tcgtatcaggacagtgtcttgctattgttacattatgcttatataagcaa
aaaaatgtttttcttttcatctttctgaccaatcttgctccacatctgtg
tcaattcaatgtgaaaaagcttgtgacttgaaattgacgagtaagcaaac
gatatcactcttatttaaaaacaaaacctttaatgatAATACGCCCTTCA
AAATAACAGCGAACTTTGTTCATGGGTTCATGGGTGTTCATgggttttca
aaacttttttcaacatACTCAAATTGGTAGTCGGGATATCTGAAGACCTC
GTTAACGAGGAATACTTTAAGGACTCGTTTTCTTAATTAAACACGTGTGA
AATCCCGCCGGCGACGTTGCAAAGGCAGGCGTGACAGGGTGTCATTTCTA
CCATTCACGAAGTCCATgtacaaacacacatacattaATTTAAATCATAA
CATAAGGGTGTGGCAGGTGCTGTGAATCttcatctttgttttgttttgaa
aatttttgaaagttgatgATGACAATCTACTTACGTCTTTCTCAAATTGT
TATCACAAACCACACTTCTTGAAAATACGTGATAAAGCACGATgataaga
gaattttttttcacactgTTCTTCCCTTAATGCTTTTTTGAATGCATAGT
TTTCTTCATCAGAGTGAGATTTTTAAGCTGTTTCAGCTGAACTGGGTAgc
ttatcttttcaaaataaagGCTGATCTCAATGTATCATTTTACTTCAAGT
TCATTTTTCATATTAAACCTTCAAAACCACTCAAAGGATAAAGATGCTTA
ACCTTAatcttcttcttcaaatttaaaatttgttatGACATCTTCATATT
TTTGCATAAGCTTCTTGTGGAAATAATATTACAGAGACATTAAAGGCTAA
CTTACAAATTTATAGCTTACATTTCAATCCTCGACAGTTTTAATATCAGT
TCCGTAGCTACCGGGAAAGGCaacgatttttgagaaatcgcttttcataa
ttaatagtttctaagtcttttttttccaaataaaatttctaagtaCATTT
GCCGGCTATATTtaacttaaatttcaaaacttccccCTCCTCGTTGTGTC
AATAAACCTCAACCCAAGCCCACAAATATCAAAATGTTTCCTATGCACAG
CTTATATTAAATCAAAATATCATAGGTATAAAAAGCTAATTGTCCCCGTG
GTTGATTTCGGTGTTAAGTTTTGACTTTGGTGTTTCATTCTCGACACGCT
GTTCTGTTTTGGAAATTGAATCATGCGTTCTGTAAGGAGACATATTAAAT
AGGGTTAAAATATAGTCACTACAATCATTGTCAAAATATCGGCAATTTta
ggtattttaacgtttatcaGAATTTAAAGCTCTGGCGAGAGTTgttattt
tagcacttccactttttttcattgaatattttgattttggataGGTTCAG
Tgttttctaggctatattcaaagccttattggagcatctgaaggtcctaa
gtcttaattctcatgttaaaactcaaattTCCAACTGCAGTTTAACACGc
ttaaaatcatttgtggtgtttaaaatttcgcaggtAAATcacctttgtct
caaatattttgtccacgATTGTATGTCAAAGTCCACTTTTGCCTATTAAA
AACGCAATCACGCTTTGGCTTAATTTCTCCGATTGTGTTTGAGTGTGCTA
GTATAAGTTTGACTAATGAGAAAACAATCGGGTAGAAGAATGTCGATTCA
TTAATCTCTTAAGATTGTATATAAATTCTGCTCTGGGTTTGTTGAACTGT
GTTATATTTCCATTTCAATCTGACTCTTTTGTGAAATAAATGATGACGAG
CTAAGATGAGGTGATATGTCTGTTGTAAATGATAATGTGTGTATTTTGCA
GACCGCCATTGCTGAAGGAAGGCCAGACAAATGTCGCTTGCAGGAACAGG
AAAAACACCAATATCTAGTGAAGAATAGATATTGGTGatttttttgatta
atttaGCCCTGGATGATTTGAAATTGTAAATCCAAAGGACATATTCTGTG
CTGACTCATTATATGTTTGTAGAGGTCCcccagcggttttcgtgatggcg
tgattggcgtgttttttcaagttcgtgatttaagattttaaagtgcgtga
ttgcgtgatcggaggaaccaacgtgatcaacgtgatcgtgatagaaagga
aatttaactcgtgataacgtgatttggaaattttctttgcAGAAAGAATT
CTCTTTATAGTCGGTGGTATTTTTAATAATACTTCTCCCGTCATCACCTC
GAAATGACGAAATCTTTAACTGACCGATTCCGGTGGCAGAATCTTTCCCC
CAAGGTCCCTGAGGTCttctttgttttgaagaaaGATGGAAACTGTTTTT
TTTCTAGATATGATTATGATTATGgagcaaattttttgaaatgactcgAA
ATGATGACTGATACTTTGCCAAGTGCCCTAACACCTTTAAATGGTGTTAA
GATTGTAACTAAATTCTCCATTCGAAATGATGACTTGATGATATGTATTT
TTAGAAACATGACGACGGCAAGGGAAAGTGTTTtagaaaaaagtacaaaa
agttgTCCAAACTTGCCCTTTTGTTGACGAGCCGTGCGATGTGTTTTGAT
TTAAAGGGATGTCAAAAGGCAATTGAATCAGGCCCAAATTATAGCTTTTT
ATTAAAGAATTGTTATTTTGGTTACTGGTAtactttcttttatttataCT
GGTTAATGATGAAGGAATAAATATGAAACTAACTGGGCGGTACTGGCCTG
GAAGACCGACGGGGAAGCACAATCTGGGTACGAATAGACCGGAATGGACC
TAGATAtcaatttttagtaaaaatcaAACCTTTGGTAGTTGAAATTCgat
aatttggaaatttttccgTAGACCAACTTGAAAAGCGGGAAAAATGTGGC
TTGAATTCAGCGGACGTGAGACAAGCGCACGTTATTAATGGATAGGCCGT
ATAGCCGGTTTCACGGTTGAAATAGGCAAAGGTTGCCTATTGGTTGGACG
CAAAACTCCGCACAAAACCCTACAAAGTGTATGTTAAACCAACAAAAAAT
TTATGGCGGTCTAACACCCCTgagtcacagacccgctggaaccccactgg
aaaagttatcaaaaattttgcccCCACTGGGAAAATATCCTGGAAATTTA
GCCCCActgaaaaagttccaccggggctgtgagacaggggtgcggTCTAA
GATTACCGtgaaaaaaaccgacccttaccgtctgcacatacccatcatcc
atttttgcctaagtacccccccccccggggggNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNccccccccccccccgggtggtGCCTTATGGGTATGAT
TTTGTGATGTGTGAATATTTTTGGCATGTAAAATAGGCCTTATCCCCCCT
CTTCTCTCGTGCGCCATGGAATTCGAATTTCGAATTCGAACTTTATATTT
AGTGTAGACCGGCCtttatcattttaaaaacattcgattcgAATGCACCG
GTTGCAAAATAAACATGGCGACATTCTGACATCTTGTTGCCTGTTGCATC
AAACCAAAACGACAGTAAACTTGGTAAGAATCTTTGATTTAAGAAATATA
GCAATGAATGCTCTTTAGTGCGAGGCATAAGAAGATGAAAGGTTGTTCTG
TTTTCTGTTCAACAGCACTCTACCCACTTCTGGCTCTGCTTTtaatgttt
gttttgtttttgatgaaaaatattgCTTTTACTACTGAACTGATACTGTA
CGTCTGTAGTAGCTGTTGTTTCAGTTCATCATATTAAAAATGTAGATTGG
ATTAAAGCTTAGGAATTTTAAGCAGTCATCTATGACATCTACTTTCCCAC
AAATGCTTTGCAGACTGAACGAAGCAGAGCAAAAACAAtaatatttttga
tgatttttgtttttgcttccaCGCACCACCACGGGCACGGCCACGTAATT
CCACCAACAAGACAAGGAAAGGACTGTGATAgcctatatattttttaatt
acagCATTAGCGACATTAGTGTCTATTAATATATATAATCATTCAGATCG
AAATTTTTACTTTGCATGCCTCGCCCTCGGAGGATCTAGCTCGCCAAagg
acttttgaaaaacttagcAACAAAAGCAAAGGTTAATTATAAAAACTAAT
ATTTGAAAGCTAAATTCAACATTATACTGGAGTTTGAAAACGTAAACACA
TCAAAAACAGCACGAATCAATGGTTTTAAAACCAAGGTGGTAATCtcatc
aaatttttaaattaatatTCTAAATTAGAAGAGTGTTTATGTAGTctgat
tttggttttgttttggCGTTTAGACTCTTTTATTTACCTTTTGGAGTACT
ATGACGTGAAACCaggcttattaaaaaaaatacactGTTGCGACTGCACT
GTGAAGTTGCAAGGTTACGGTTACTGAACTGATATCATGTTGCATTTTGA
GGGTGACTCGGTTTATAAATTCCCTGAAGGACCTGAAggtaatttcaatt
tcattgatTACATGCTGACAACCTAAAAGGGCAGCACCCAAGAAAGAATG
AGCCTAGAAAAGACTGGTTTTTATCCGCAGAATGTTATGgattgaaagaa
agaaaaaattaagaaaaaagaagaaaaacaaacagctTGTTTCAATAACT
TAGAACATTGAATGTAACACACTTTAAGACACCTGGTATAAAAAACAGAC
CCACTTGTGTCGACTGCTTGTTTAATTAATGATGTTTTTAATAATTACTC
AGTATCGTCTGGCTAAGACCTTTTAAACATTGTATTAGATTTGAAACACG
CAAAAGCTCATAAAAAGTAATTAGTCTTCGACCATTGATTGCAAACAAAA
GTGATTAATGTCAACTGCTTGGCACGTGGCTGATGATTCCAAGCCAATTA
AAATCTCTTCAGAAAAAATCTGACTTAAAAGAGGGTGGTTTCTATTTTAA
AGCCATTGTCCTTTTCTTTTCACCTCTCCGCGTATCAATGTCGCGATCGA
AAAATGAGAATAAGTTTGAAACAGATGGTCAAAGGGAGATTGGTTTGGTA
CAGGTCAATACAATTGTGTACATAATTCTTGTAGAGAAACTCGAGAAGGT
TACGATGTGTTGATTGTgtaaaaaaaacgagttataCAGAGGGGAGCCGA
TTGTTTTGAGCGTTTTATAtttgtcaaatattttcaaagaagagCACAAC
AAATTACGAGCGAGTAGGTAGGTGTGAGAGCATGTAGTATTTCATAAATT
CCACTGAGCTGCATGAAATTATCTTTCGTCAAAATCTAGATGCGATTTTC
AAGCCGAAAATCATGGGGTATTTATTTGATGATTATAAATGcgtgatatt
tttaaaaaccttttctCATGCGGAGATTTTGAATTGGAAAAGCAATTCAA
TGATAAAGTAAACATGTGTGTATTTATATGTTATATGCAATTTCTTTCAT
TGACTTTCGTTCGTTACACTTTGTTacgacttcattttttttctcacttc
gatattttctttctttttttgcatttataAATATTAATTTGTGCATGCGC
AGTAGATGAAACCACATGCTATCAATTTTTCACGATCTTAGTCTCCAAGT
GAAGTTGTTCGATGCTCGCGGAATGACAGTATGGATTGTTCTCTCGTCAA
GTACTGGTTTAAAGTTGGAAGAGCCATTATTTTTCAGCTTTCGtgttttt
tcttgcttgagatctttttttttatcGCAGGGTGTTTACTCTAGAAAGTT
GGTAAgcaaatgagaaagaaaaaaagaggcAAGAATAGTTTTTGagacaa
tttctttttttttcttcgtgaagaaaatgtttgaaaattctttGTATTAT
GATGTTAAGTTCGAGTATTGATAAATAACAAATCTGTGAAGATTTGAGAC
CGAATTGTGAATTAATAATATAACGTTTGGGGGAAAGACAATATTTTTAC
GAGTGGGGTCGAGAgtaactttttttgagaaaaaagagagaTACTATATA
CTACGTAAAGGATCTAAGGAACTCTATGTCTTATTTATAAGGGGAAAATT
ATCAGTAAATTTGTATGCGAAGTATAGGTAGACGAGTATACCGAAATTAT
GATTTTCTTGAAGTTTTTTTCGTTGGAAAATTAAATTGTATTTTGTAGAA
AACGCCTCCAAAGTGTGTGGACTTCTCATTATTTATTCTACTCTTTTGTg
ttgtaatatatttttttgttttcagtgcATTATGAATTCAAAGCAAACAA
AAGAGAGGAGAAGaagtgaaaagatttttttgtaaataaccATTTGGAAA
GATAGGACACCTACATTTAGCAACTTTCTGCAGAAGAAAATGCGTACGAG
GAGGTGGCTCTAGAAACGAGGAGAGATTTTTTGTAAACTGGAGAGAACAC
GAGAAAGATGTATAAATTCGTACACAtcaacattttttatatttcaagac
ttttttttatcatataCTTTCACGCACCACAATTTGTTTATACTGGCTCC
GAAGGCGAAGTTCGGATTGTACTAGACTCATTATCAAACCCATACGGGGT
CACTTCTGAAAATAAGTGCTGTGACGGAGGAATTAGAGATACTTTAACGT
CGAAATGTCGTACGCCGTGTCGTATGCAGGTCAAGTTTTGTATAACACCT
GGTGATTTTTACCAAGTTCAGCAGTGCACTATGGGTAAAAGGACATCAGA
GACTTTTCAAGGAAACGAAATTTCATTTGAGTTGCCTGATTTAAATTTGA
AGGAGCCTGTGTATGAGAATTATCAGCAGATTTCAAACACGacgaatttg
gaaaaatttgagaaagctGATGCATTGGTTTTTCGAATCAAACACGCGCT
AAGGGAGGAggtatg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007557TCONS_00007557Clytia hemisphaericatranscript
TCONS_00007558TCONS_00007558Clytia hemisphaericatranscript
TCONS_00007559TCONS_00007559Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007557-proteinTCONS_00007557-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:178468..186932 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.07	0.08	0	3.12	2.39	6.69	5.57	3.84	2.52	3.25	2.86	5.54	4.99	5.34	7.22	7.64	5.17	5.58	6.35	4.3	5.41	1.03	2.27	33.36	24.98	0.56	0.44	0.08	0.39