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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007558 ID=TCONS_00007558|Name=TCONS_00007558|organism=Clytia hemisphaerica|type=transcript|length=726bp
ttcgAATGCACCGGTTGCAAAATAAACATGGCGACATTCTGACATCTTGT
TGCCTGTTGCATCAAACCAAAACGACAGTAAACTTGtgcATTATGAATTC
AAAGCAAACAAAAGAGAGGAGAAGaagtgaaaagatttttttgtaaataa
ccATTTGGAAAGATAGGACACCTACATTTAGCAACTTTCTGCAGAAGAAA
ATGCGTACGAGGAGGTGGCTCTAGAAACGAGGAGAGATTTTTTGTAAACT
GGAGAGAACACGAGAAAGATGTATAAATTCGTACACAtcaacatttttta
tatttcaagacttttttttatcatataCTTTCACGCACCACAATTTGTTT
ATACTGGCTCCGAAGGCGAAGTTCGGATTGTACTAGACTCATTATCAAAC
CCATACGGGGTCACTTCTGAAAATAAGTGCTGTGACGGAGGAATTAGAGA
TACTTTAACGTCGAAATGTCGTACGCCGTGTCGTATGCAGGTCAAGTTTT
GTATAACACCTGGTGATTTTTACCAAGTTCAGCAGTGCACTATGGGTAAA
AGGACATCAGAGACTTTTCAAGGAAACGAAATTTCATTTGAGTTGCCTGA
TTTAAATTTGAAGGAGCCTGTGTATGAGAATTATCAGCAGATTTCAAACA
CGacgaatttggaaaaatttgagaaagctGATGCATTGGTTTTTCGAATC
AAACACGCGCTAAGGGAGGAggtatg Run BLAST on NCBI transcript from alignment at sc0000078:183555..186932+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007558 ID=TCONS_00007558|Name=TCONS_00007558|organism=Clytia hemisphaerica|type=transcript|length=3378bp|location=Sequence derived from alignment at sc0000078:183555..186932+ (Clytia hemisphaerica)
ttcgAATGCACCGGTTGCAAAATAAACATGGCGACATTCTGACATCTTGT
TGCCTGTTGCATCAAACCAAAACGACAGTAAACTTGGTAAGAATCTTTGA
TTTAAGAAATATAGCAATGAATGCTCTTTAGTGCGAGGCATAAGAAGATG
AAAGGTTGTTCTGTTTTCTGTTCAACAGCACTCTACCCACTTCTGGCTCT
GCTTTtaatgtttgttttgtttttgatgaaaaatattgCTTTTACTACTG
AACTGATACTGTACGTCTGTAGTAGCTGTTGTTTCAGTTCATCATATTAA
AAATGTAGATTGGATTAAAGCTTAGGAATTTTAAGCAGTCATCTATGACA
TCTACTTTCCCACAAATGCTTTGCAGACTGAACGAAGCAGAGCAAAAACA
AtaatatttttgatgatttttgtttttgcttccaCGCACCACCACGGGCA
CGGCCACGTAATTCCACCAACAAGACAAGGAAAGGACTGTGATAgcctat
atattttttaattacagCATTAGCGACATTAGTGTCTATTAATATATATA
ATCATTCAGATCGAAATTTTTACTTTGCATGCCTCGCCCTCGGAGGATCT
AGCTCGCCAAaggacttttgaaaaacttagcAACAAAAGCAAAGGTTAAT
TATAAAAACTAATATTTGAAAGCTAAATTCAACATTATACTGGAGTTTGA
AAACGTAAACACATCAAAAACAGCACGAATCAATGGTTTTAAAACCAAGG
TGGTAATCtcatcaaatttttaaattaatatTCTAAATTAGAAGAGTGTT
TATGTAGTctgattttggttttgttttggCGTTTAGACTCTTTTATTTAC
CTTTTGGAGTACTATGACGTGAAACCaggcttattaaaaaaaatacactG
TTGCGACTGCACTGTGAAGTTGCAAGGTTACGGTTACTGAACTGATATCA
TGTTGCATTTTGAGGGTGACTCGGTTTATAAATTCCCTGAAGGACCTGAA
ggtaatttcaatttcattgatTACATGCTGACAACCTAAAAGGGCAGCAC
CCAAGAAAGAATGAGCCTAGAAAAGACTGGTTTTTATCCGCAGAATGTTA
TGgattgaaagaaagaaaaaattaagaaaaaagaagaaaaacaaacagct
TGTTTCAATAACTTAGAACATTGAATGTAACACACTTTAAGACACCTGGT
ATAAAAAACAGACCCACTTGTGTCGACTGCTTGTTTAATTAATGATGTTT
TTAATAATTACTCAGTATCGTCTGGCTAAGACCTTTTAAACATTGTATTA
GATTTGAAACACGCAAAAGCTCATAAAAAGTAATTAGTCTTCGACCATTG
ATTGCAAACAAAAGTGATTAATGTCAACTGCTTGGCACGTGGCTGATGAT
TCCAAGCCAATTAAAATCTCTTCAGAAAAAATCTGACTTAAAAGAGGGTG
GTTTCTATTTTAAAGCCATTGTCCTTTTCTTTTCACCTCTCCGCGTATCA
ATGTCGCGATCGAAAAATGAGAATAAGTTTGAAACAGATGGTCAAAGGGA
GATTGGTTTGGTACAGGTCAATACAATTGTGTACATAATTCTTGTAGAGA
AACTCGAGAAGGTTACGATGTGTTGATTGTgtaaaaaaaacgagttataC
AGAGGGGAGCCGATTGTTTTGAGCGTTTTATAtttgtcaaatattttcaa
agaagagCACAACAAATTACGAGCGAGTAGGTAGGTGTGAGAGCATGTAG
TATTTCATAAATTCCACTGAGCTGCATGAAATTATCTTTCGTCAAAATCT
AGATGCGATTTTCAAGCCGAAAATCATGGGGTATTTATTTGATGATTATA
AATGcgtgatatttttaaaaaccttttctCATGCGGAGATTTTGAATTGG
AAAAGCAATTCAATGATAAAGTAAACATGTGTGTATTTATATGTTATATG
CAATTTCTTTCATTGACTTTCGTTCGTTACACTTTGTTacgacttcattt
tttttctcacttcgatattttctttctttttttgcatttataAATATTAA
TTTGTGCATGCGCAGTAGATGAAACCACATGCTATCAATTTTTCACGATC
TTAGTCTCCAAGTGAAGTTGTTCGATGCTCGCGGAATGACAGTATGGATT
GTTCTCTCGTCAAGTACTGGTTTAAAGTTGGAAGAGCCATTATTTTTCAG
CTTTCGtgttttttcttgcttgagatctttttttttatcGCAGGGTGTTT
ACTCTAGAAAGTTGGTAAgcaaatgagaaagaaaaaaagaggcAAGAATA
GTTTTTGagacaatttctttttttttcttcgtgaagaaaatgtttgaaaa
ttctttGTATTATGATGTTAAGTTCGAGTATTGATAAATAACAAATCTGT
GAAGATTTGAGACCGAATTGTGAATTAATAATATAACGTTTGGGGGAAAG
ACAATATTTTTACGAGTGGGGTCGAGAgtaactttttttgagaaaaaaga
gagaTACTATATACTACGTAAAGGATCTAAGGAACTCTATGTCTTATTTA
TAAGGGGAAAATTATCAGTAAATTTGTATGCGAAGTATAGGTAGACGAGT
ATACCGAAATTATGATTTTCTTGAAGTTTTTTTCGTTGGAAAATTAAATT
GTATTTTGTAGAAAACGCCTCCAAAGTGTGTGGACTTCTCATTATTTATT
CTACTCTTTTGTgttgtaatatatttttttgttttcagtgcATTATGAAT
TCAAAGCAAACAAAAGAGAGGAGAAGaagtgaaaagatttttttgtaaat
aaccATTTGGAAAGATAGGACACCTACATTTAGCAACTTTCTGCAGAAGA
AAATGCGTACGAGGAGGTGGCTCTAGAAACGAGGAGAGATTTTTTGTAAA
CTGGAGAGAACACGAGAAAGATGTATAAATTCGTACACAtcaacattttt
tatatttcaagacttttttttatcatataCTTTCACGCACCACAATTTGT
TTATACTGGCTCCGAAGGCGAAGTTCGGATTGTACTAGACTCATTATCAA
ACCCATACGGGGTCACTTCTGAAAATAAGTGCTGTGACGGAGGAATTAGA
GATACTTTAACGTCGAAATGTCGTACGCCGTGTCGTATGCAGGTCAAGTT
TTGTATAACACCTGGTGATTTTTACCAAGTTCAGCAGTGCACTATGGGTA
AAAGGACATCAGAGACTTTTCAAGGAAACGAAATTTCATTTGAGTTGCCT
GATTTAAATTTGAAGGAGCCTGTGTATGAGAATTATCAGCAGATTTCAAA
CACGacgaatttggaaaaatttgagaaagctGATGCATTGGTTTTTCGAA
TCAAACACGCGCTAAGGGAGGAggtatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007558-exon-sc0000078-1491911889:183555..183640 | TCONS_00007558-exon-sc0000078-1491911889:183555..183640 | Clytia hemisphaerica | exon |
| TCONS_00007558-exon-sc0000078-1510915933:183555..183640 | TCONS_00007558-exon-sc0000078-1510915933:183555..183640 | Clytia hemisphaerica | exon |
| TCONS_00007558-exon-sc0000078-1575043694:183555..183640 | TCONS_00007558-exon-sc0000078-1575043694:183555..183640 | Clytia hemisphaerica | exon |
| TCONS_00007558-exon-sc0000078-1491911889:186293..186932 | TCONS_00007558-exon-sc0000078-1491911889:186293..186932 | Clytia hemisphaerica | exon |
| TCONS_00007558-exon-sc0000078-1510915933:186293..186932 | TCONS_00007558-exon-sc0000078-1510915933:186293..186932 | Clytia hemisphaerica | exon |
| TCONS_00007558-exon-sc0000078-1575043694:186293..186932 | TCONS_00007558-exon-sc0000078-1575043694:186293..186932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:183555..186932 + |
Blast
The following BLAST results are available for this feature:
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