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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007557 ID=TCONS_00007557|Name=TCONS_00007557|organism=Clytia hemisphaerica|type=transcript|length=693bp
GacaatttttgggaaaaacaaCTTCATACGCAGATTGAACTGAGAAGGTT
GTGtgcATTATGAATTCAAAGCAAACAAAAGAGAGGAGAAGaagtgaaaa
gatttttttgtaaataaccATTTGGAAAGATAGGACACCTACATTTAGCA
ACTTTCTGCAGAAGAAAATGCGTACGAGGAGGTGGCTCTAGAAACGAGGA
GAGATTTTTTGTAAACTGGAGAGAACACGAGAAAGATGTATAAATTCGTA
CACAtcaacattttttatatttcaagacttttttttatcatataCTTTCA
CGCACCACAATTTGTTTATACTGGCTCCGAAGGCGAAGTTCGGATTGTAC
TAGACTCATTATCAAACCCATACGGGGTCACTTCTGAAAATAAGTGCTGT
GACGGAGGAATTAGAGATACTTTAACGTCGAAATGTCGTACGCCGTGTCG
TATGCAGGTCAAGTTTTGTATAACACCTGGTGATTTTTACCAAGTTCAGC
AGTGCACTATGGGTAAAAGGACATCAGAGACTTTTCAAGGAAACGAAATT
TCATTTGAGTTGCCTGATTTAAATTTGAAGGAGCCTGTGTATGAGAATTA
TCAGCAGATTTCAAACACGacgaatttggaaaaatttgagaaagctGATG
CATTGGTTTTTCGAATCAAACACGCGCTAAGGGAGGAggtatg Run BLAST on NCBI protein sequence of TCONS_00007557-protein >TCONS_00007557-protein ID=TCONS_00007557-protein|Name=TCONS_00007557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MYKFVHINIFYISRLFFIIYFHAPQFVYTGSEGEVRIVLDSLSNPYGVTS
ENKCCDGGIRDTLTSKCRTPCRMQVKFCITPGDFYQVQQCTMGKRTSETF
QGNEISFELPDLNLKEPVYENYQQISNTTNLEKFEKADALVFRIKHALRE
EV Run BLAST on NCBI transcript from alignment at sc0000078:178468..186932+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007557 ID=TCONS_00007557|Name=TCONS_00007557|organism=Clytia hemisphaerica|type=transcript|length=8465bp|location=Sequence derived from alignment at sc0000078:178468..186932+ (Clytia hemisphaerica)
GacaatttttgggaaaaacaaCTTCATACGCAGATTGAACTGAGAAGGTT
GTGGTAAgatcttgttttttttgctcttgGACATCAAGAAACGATGATTC
CCTTTCGAAAAGACATAATAAATAGAGATAACGGGATTTCGCCCCTCTag
gtaggcttctgctcatcctctagtaAAAaggtttcttataggaagtatat
ctatagactTAGAGATCTGTGATTCAAGATCGGTGATTCAGGTTATACCC
TTTAGGCACATTATTTTTGTGTTGAAAAAGCAGTGTAAATaggtcttttc
ataaattacgtcacgaacatcacttgcctcgtattcaaacaattaccatg
gtgattatgttcGTTGAgacataaaatgatttttttatgaatagaaagta
gttttaataaaatccactgggagttaatcactatggcaataatttcaaaa
tgaggcaagtgatgttcgtgacgtaatttatgaaaaggtctatcagtAAA
AGGAGAAATGAGAATGTATAGAATTTCTGTCCAGTCATATGATGTAAATG
TGTTGTCATCAACTGATGACTACTCTCTCTGTAATTGTTGactcattttt
ttaatttgtgtCATTTCTCAAGTTCCAAGAAACTTGAACTAGTAAGAACT
ACAAGGTCATCTTTTACTTtccttttcttttataaaagcaATTTTATAAG
TATAATGAGGCTCAAAGTcgacaaaaaataagaacaaattaagaacaatg
cttAGCCTAGAATTACCCAATTTATgggttaaagtagtaaaaattgggta
aaaaacctaaaatacctcaattacaccctattgaataagaacaggataag
aacaatttgaggctcaaagtgccaaaaataagaacagccggaCGTCAGCa
gaattttactggttcttattaaAAGAAAAGGATGTAATGTATCTCTCAGT
GATACTTTTGGGAGTTGTCTGATGGAATTACTCATCCTCTCACAAATAGT
TTTCAAATACCGTAGCTTTTTGTCTTTAAATCATGCATTTGCCTTACTGT
attggttttgtttttatataagtgttcccgtttcatatcagacacatatt
tcgtatcaggacagtgtcttgctattgttacattatgcttatataagcaa
aaaaatgtttttcttttcatctttctgaccaatcttgctccacatctgtg
tcaattcaatgtgaaaaagcttgtgacttgaaattgacgagtaagcaaac
gatatcactcttatttaaaaacaaaacctttaatgatAATACGCCCTTCA
AAATAACAGCGAACTTTGTTCATGGGTTCATGGGTGTTCATgggttttca
aaacttttttcaacatACTCAAATTGGTAGTCGGGATATCTGAAGACCTC
GTTAACGAGGAATACTTTAAGGACTCGTTTTCTTAATTAAACACGTGTGA
AATCCCGCCGGCGACGTTGCAAAGGCAGGCGTGACAGGGTGTCATTTCTA
CCATTCACGAAGTCCATgtacaaacacacatacattaATTTAAATCATAA
CATAAGGGTGTGGCAGGTGCTGTGAATCttcatctttgttttgttttgaa
aatttttgaaagttgatgATGACAATCTACTTACGTCTTTCTCAAATTGT
TATCACAAACCACACTTCTTGAAAATACGTGATAAAGCACGATgataaga
gaattttttttcacactgTTCTTCCCTTAATGCTTTTTTGAATGCATAGT
TTTCTTCATCAGAGTGAGATTTTTAAGCTGTTTCAGCTGAACTGGGTAgc
ttatcttttcaaaataaagGCTGATCTCAATGTATCATTTTACTTCAAGT
TCATTTTTCATATTAAACCTTCAAAACCACTCAAAGGATAAAGATGCTTA
ACCTTAatcttcttcttcaaatttaaaatttgttatGACATCTTCATATT
TTTGCATAAGCTTCTTGTGGAAATAATATTACAGAGACATTAAAGGCTAA
CTTACAAATTTATAGCTTACATTTCAATCCTCGACAGTTTTAATATCAGT
TCCGTAGCTACCGGGAAAGGCaacgatttttgagaaatcgcttttcataa
ttaatagtttctaagtcttttttttccaaataaaatttctaagtaCATTT
GCCGGCTATATTtaacttaaatttcaaaacttccccCTCCTCGTTGTGTC
AATAAACCTCAACCCAAGCCCACAAATATCAAAATGTTTCCTATGCACAG
CTTATATTAAATCAAAATATCATAGGTATAAAAAGCTAATTGTCCCCGTG
GTTGATTTCGGTGTTAAGTTTTGACTTTGGTGTTTCATTCTCGACACGCT
GTTCTGTTTTGGAAATTGAATCATGCGTTCTGTAAGGAGACATATTAAAT
AGGGTTAAAATATAGTCACTACAATCATTGTCAAAATATCGGCAATTTta
ggtattttaacgtttatcaGAATTTAAAGCTCTGGCGAGAGTTgttattt
tagcacttccactttttttcattgaatattttgattttggataGGTTCAG
Tgttttctaggctatattcaaagccttattggagcatctgaaggtcctaa
gtcttaattctcatgttaaaactcaaattTCCAACTGCAGTTTAACACGc
ttaaaatcatttgtggtgtttaaaatttcgcaggtAAATcacctttgtct
caaatattttgtccacgATTGTATGTCAAAGTCCACTTTTGCCTATTAAA
AACGCAATCACGCTTTGGCTTAATTTCTCCGATTGTGTTTGAGTGTGCTA
GTATAAGTTTGACTAATGAGAAAACAATCGGGTAGAAGAATGTCGATTCA
TTAATCTCTTAAGATTGTATATAAATTCTGCTCTGGGTTTGTTGAACTGT
GTTATATTTCCATTTCAATCTGACTCTTTTGTGAAATAAATGATGACGAG
CTAAGATGAGGTGATATGTCTGTTGTAAATGATAATGTGTGTATTTTGCA
GACCGCCATTGCTGAAGGAAGGCCAGACAAATGTCGCTTGCAGGAACAGG
AAAAACACCAATATCTAGTGAAGAATAGATATTGGTGatttttttgatta
atttaGCCCTGGATGATTTGAAATTGTAAATCCAAAGGACATATTCTGTG
CTGACTCATTATATGTTTGTAGAGGTCCcccagcggttttcgtgatggcg
tgattggcgtgttttttcaagttcgtgatttaagattttaaagtgcgtga
ttgcgtgatcggaggaaccaacgtgatcaacgtgatcgtgatagaaagga
aatttaactcgtgataacgtgatttggaaattttctttgcAGAAAGAATT
CTCTTTATAGTCGGTGGTATTTTTAATAATACTTCTCCCGTCATCACCTC
GAAATGACGAAATCTTTAACTGACCGATTCCGGTGGCAGAATCTTTCCCC
CAAGGTCCCTGAGGTCttctttgttttgaagaaaGATGGAAACTGTTTTT
TTTCTAGATATGATTATGATTATGgagcaaattttttgaaatgactcgAA
ATGATGACTGATACTTTGCCAAGTGCCCTAACACCTTTAAATGGTGTTAA
GATTGTAACTAAATTCTCCATTCGAAATGATGACTTGATGATATGTATTT
TTAGAAACATGACGACGGCAAGGGAAAGTGTTTtagaaaaaagtacaaaa
agttgTCCAAACTTGCCCTTTTGTTGACGAGCCGTGCGATGTGTTTTGAT
TTAAAGGGATGTCAAAAGGCAATTGAATCAGGCCCAAATTATAGCTTTTT
ATTAAAGAATTGTTATTTTGGTTACTGGTAtactttcttttatttataCT
GGTTAATGATGAAGGAATAAATATGAAACTAACTGGGCGGTACTGGCCTG
GAAGACCGACGGGGAAGCACAATCTGGGTACGAATAGACCGGAATGGACC
TAGATAtcaatttttagtaaaaatcaAACCTTTGGTAGTTGAAATTCgat
aatttggaaatttttccgTAGACCAACTTGAAAAGCGGGAAAAATGTGGC
TTGAATTCAGCGGACGTGAGACAAGCGCACGTTATTAATGGATAGGCCGT
ATAGCCGGTTTCACGGTTGAAATAGGCAAAGGTTGCCTATTGGTTGGACG
CAAAACTCCGCACAAAACCCTACAAAGTGTATGTTAAACCAACAAAAAAT
TTATGGCGGTCTAACACCCCTgagtcacagacccgctggaaccccactgg
aaaagttatcaaaaattttgcccCCACTGGGAAAATATCCTGGAAATTTA
GCCCCActgaaaaagttccaccggggctgtgagacaggggtgcggTCTAA
GATTACCGtgaaaaaaaccgacccttaccgtctgcacatacccatcatcc
atttttgcctaagtacccccccccccggggggNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNccccccccccccccgggtggtGCCTTATGGGTATGAT
TTTGTGATGTGTGAATATTTTTGGCATGTAAAATAGGCCTTATCCCCCCT
CTTCTCTCGTGCGCCATGGAATTCGAATTTCGAATTCGAACTTTATATTT
AGTGTAGACCGGCCtttatcattttaaaaacattcgattcgAATGCACCG
GTTGCAAAATAAACATGGCGACATTCTGACATCTTGTTGCCTGTTGCATC
AAACCAAAACGACAGTAAACTTGGTAAGAATCTTTGATTTAAGAAATATA
GCAATGAATGCTCTTTAGTGCGAGGCATAAGAAGATGAAAGGTTGTTCTG
TTTTCTGTTCAACAGCACTCTACCCACTTCTGGCTCTGCTTTtaatgttt
gttttgtttttgatgaaaaatattgCTTTTACTACTGAACTGATACTGTA
CGTCTGTAGTAGCTGTTGTTTCAGTTCATCATATTAAAAATGTAGATTGG
ATTAAAGCTTAGGAATTTTAAGCAGTCATCTATGACATCTACTTTCCCAC
AAATGCTTTGCAGACTGAACGAAGCAGAGCAAAAACAAtaatatttttga
tgatttttgtttttgcttccaCGCACCACCACGGGCACGGCCACGTAATT
CCACCAACAAGACAAGGAAAGGACTGTGATAgcctatatattttttaatt
acagCATTAGCGACATTAGTGTCTATTAATATATATAATCATTCAGATCG
AAATTTTTACTTTGCATGCCTCGCCCTCGGAGGATCTAGCTCGCCAAagg
acttttgaaaaacttagcAACAAAAGCAAAGGTTAATTATAAAAACTAAT
ATTTGAAAGCTAAATTCAACATTATACTGGAGTTTGAAAACGTAAACACA
TCAAAAACAGCACGAATCAATGGTTTTAAAACCAAGGTGGTAATCtcatc
aaatttttaaattaatatTCTAAATTAGAAGAGTGTTTATGTAGTctgat
tttggttttgttttggCGTTTAGACTCTTTTATTTACCTTTTGGAGTACT
ATGACGTGAAACCaggcttattaaaaaaaatacactGTTGCGACTGCACT
GTGAAGTTGCAAGGTTACGGTTACTGAACTGATATCATGTTGCATTTTGA
GGGTGACTCGGTTTATAAATTCCCTGAAGGACCTGAAggtaatttcaatt
tcattgatTACATGCTGACAACCTAAAAGGGCAGCACCCAAGAAAGAATG
AGCCTAGAAAAGACTGGTTTTTATCCGCAGAATGTTATGgattgaaagaa
agaaaaaattaagaaaaaagaagaaaaacaaacagctTGTTTCAATAACT
TAGAACATTGAATGTAACACACTTTAAGACACCTGGTATAAAAAACAGAC
CCACTTGTGTCGACTGCTTGTTTAATTAATGATGTTTTTAATAATTACTC
AGTATCGTCTGGCTAAGACCTTTTAAACATTGTATTAGATTTGAAACACG
CAAAAGCTCATAAAAAGTAATTAGTCTTCGACCATTGATTGCAAACAAAA
GTGATTAATGTCAACTGCTTGGCACGTGGCTGATGATTCCAAGCCAATTA
AAATCTCTTCAGAAAAAATCTGACTTAAAAGAGGGTGGTTTCTATTTTAA
AGCCATTGTCCTTTTCTTTTCACCTCTCCGCGTATCAATGTCGCGATCGA
AAAATGAGAATAAGTTTGAAACAGATGGTCAAAGGGAGATTGGTTTGGTA
CAGGTCAATACAATTGTGTACATAATTCTTGTAGAGAAACTCGAGAAGGT
TACGATGTGTTGATTGTgtaaaaaaaacgagttataCAGAGGGGAGCCGA
TTGTTTTGAGCGTTTTATAtttgtcaaatattttcaaagaagagCACAAC
AAATTACGAGCGAGTAGGTAGGTGTGAGAGCATGTAGTATTTCATAAATT
CCACTGAGCTGCATGAAATTATCTTTCGTCAAAATCTAGATGCGATTTTC
AAGCCGAAAATCATGGGGTATTTATTTGATGATTATAAATGcgtgatatt
tttaaaaaccttttctCATGCGGAGATTTTGAATTGGAAAAGCAATTCAA
TGATAAAGTAAACATGTGTGTATTTATATGTTATATGCAATTTCTTTCAT
TGACTTTCGTTCGTTACACTTTGTTacgacttcattttttttctcacttc
gatattttctttctttttttgcatttataAATATTAATTTGTGCATGCGC
AGTAGATGAAACCACATGCTATCAATTTTTCACGATCTTAGTCTCCAAGT
GAAGTTGTTCGATGCTCGCGGAATGACAGTATGGATTGTTCTCTCGTCAA
GTACTGGTTTAAAGTTGGAAGAGCCATTATTTTTCAGCTTTCGtgttttt
tcttgcttgagatctttttttttatcGCAGGGTGTTTACTCTAGAAAGTT
GGTAAgcaaatgagaaagaaaaaaagaggcAAGAATAGTTTTTGagacaa
tttctttttttttcttcgtgaagaaaatgtttgaaaattctttGTATTAT
GATGTTAAGTTCGAGTATTGATAAATAACAAATCTGTGAAGATTTGAGAC
CGAATTGTGAATTAATAATATAACGTTTGGGGGAAAGACAATATTTTTAC
GAGTGGGGTCGAGAgtaactttttttgagaaaaaagagagaTACTATATA
CTACGTAAAGGATCTAAGGAACTCTATGTCTTATTTATAAGGGGAAAATT
ATCAGTAAATTTGTATGCGAAGTATAGGTAGACGAGTATACCGAAATTAT
GATTTTCTTGAAGTTTTTTTCGTTGGAAAATTAAATTGTATTTTGTAGAA
AACGCCTCCAAAGTGTGTGGACTTCTCATTATTTATTCTACTCTTTTGTg
ttgtaatatatttttttgttttcagtgcATTATGAATTCAAAGCAAACAA
AAGAGAGGAGAAGaagtgaaaagatttttttgtaaataaccATTTGGAAA
GATAGGACACCTACATTTAGCAACTTTCTGCAGAAGAAAATGCGTACGAG
GAGGTGGCTCTAGAAACGAGGAGAGATTTTTTGTAAACTGGAGAGAACAC
GAGAAAGATGTATAAATTCGTACACAtcaacattttttatatttcaagac
ttttttttatcatataCTTTCACGCACCACAATTTGTTTATACTGGCTCC
GAAGGCGAAGTTCGGATTGTACTAGACTCATTATCAAACCCATACGGGGT
CACTTCTGAAAATAAGTGCTGTGACGGAGGAATTAGAGATACTTTAACGT
CGAAATGTCGTACGCCGTGTCGTATGCAGGTCAAGTTTTGTATAACACCT
GGTGATTTTTACCAAGTTCAGCAGTGCACTATGGGTAAAAGGACATCAGA
GACTTTTCAAGGAAACGAAATTTCATTTGAGTTGCCTGATTTAAATTTGA
AGGAGCCTGTGTATGAGAATTATCAGCAGATTTCAAACACGacgaatttg
gaaaaatttgagaaagctGATGCATTGGTTTTTCGAATCAAACACGCGCT
AAGGGAGGAggtatg Coding sequence (CDS) from alignment at sc0000078:178468..186932+ >TCONS_00007557 ID=TCONS_00007557|Name=TCONS_00007557|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0000078:178468..186932+ (Clytia hemisphaerica)
ATGTATAAATTCGTACACAtcaacattttttatatttcaagacttttttt
tatcatataCTTTCACGCACCACAATTTGTTTATACTGGCTCCGAAGGCG
AAGTTCGGATTGTACTAGACTCATTATCAAACCCATACGGGGTCACTTCT
GAAAATAAGTGCTGTGACGGAGGAATTAGAGATACTTTAACGTCGAAATG
TCGTACGCCGTGTCGTATGCAGGTCAAGTTTTGTATAACACCTGGTGATT
TTTACCAAGTTCAGCAGTGCACTATGGGTAAAAGGACATCAGAGACTTTT
CAAGGAAACGAAATTTCATTTGAGTTGCCTGATTTAAATTTGAAGGAGCC
TGTGTATGAGAATTATCAGCAGATTTCAAACACGacgaatttggaaaaat
ttgagaaagctGATGCATTGGTTTTTCGAATCAAACACGCGCTAAGGGAG
GAggta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007557-exon-sc0000078-1491911889:178468..178520 | TCONS_00007557-exon-sc0000078-1491911889:178468..178520 | Clytia hemisphaerica | exon |
| TCONS_00007557-exon-sc0000078-1510915933:178468..178520 | TCONS_00007557-exon-sc0000078-1510915933:178468..178520 | Clytia hemisphaerica | exon |
| TCONS_00007557-exon-sc0000078-1575043694:178468..178520 | TCONS_00007557-exon-sc0000078-1575043694:178468..178520 | Clytia hemisphaerica | exon |
| TCONS_00007557-exon-sc0000078-1491911889:186293..186932 | TCONS_00007557-exon-sc0000078-1491911889:186293..186932 | Clytia hemisphaerica | exon |
| TCONS_00007557-exon-sc0000078-1510915933:186293..186932 | TCONS_00007557-exon-sc0000078-1510915933:186293..186932 | Clytia hemisphaerica | exon |
| TCONS_00007557-exon-sc0000078-1575043694:186293..186932 | TCONS_00007557-exon-sc0000078-1575043694:186293..186932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:178468..186932 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011651 | Notch_ligand_N |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007275 | multicellular organism development |
| GO:0007219 | Notch signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007275 |
multicellular organism development |
| biological_process |
GO:0007219 |
Notch signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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