XLOC_004272 (gene) - C. hemisphaerica

Overview
NameXLOC_004272
Unique NameXLOC_004272
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000078:151037..154845+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004272 ID=XLOC_004272|Name=XLOC_004272|organism=Clytia hemisphaerica|type=gene|length=3809bp|location=Sequence derived from alignment at sc0000078:151037..154845+ (Clytia hemisphaerica)
cagcataatataacaataggcagacactgtcctgatatgaaatatgtgtc
tgatatgaaacaggaacacttatgtaaaaataacccctttaattaatttt
ttagacGAATTATAAAAATGAGAGCAGCAGCAGTACCAGCGGACGAATTG
AATCACCGCGCGtcagaaaatgagaaaattttgctAATTCTAAATCCACA
TTTACCATCAGCTTTCAAAGCCAAACCGAAAATCAAACATGATTATTTGG
CTTCTGATGAAacagaacaaaagaaaagacaAGTTTCTTCGTTAAAAGAA
GTTGGCTCAAAACTTTGTGATGAGTTTTTGGAAAAACATGATCATTTCAA
TGCGGAAGAGATTTCACAAAGTTTTGGTGAAGGTATTATTAACCCTTTCA
GTGTTGGCAAATGCCGACATGAGCACTTTCCATCTATTTGCCAATGACGG
CATTTTGCCGACATGAAGTTTATTGAAAGTTCGATTTCGAACTAGATTTC
ATTAAAATGGCACAGTTGATAATGAAACATATTTCAAAGATGTGTTTCAT
TCATAGTTATACattttcaactcaaaattatattttacagAAAATGAAGC
TAATTGTGATAGTTAACTCTGTGGTCAATCATGTCTGCATACTGAtgtct
ggcaaataggtcgaaccttcatTTTTCCCGTGGAAACATACATACTTTCC
TCTAACACTAACACGACTTAactttttagcattttaaaagaatttatttc
AGTGGAAAATAGGTNACTAACACGACTTAACTTTTTagtattttaaaaga
atttatttcagtggaaaataggtcgaacctttaAAAAACGCATAGTTCAA
GGGTTAAGgagttttatcttttttccttatatttgtAACCATAAGTCATG
GTTGTTTTAGGTTTTGTAGATAGCCCGGGTACTTCTACAGTAGAAGATAT
TCTTTCGATTGTATTCACGAGTCCATTTGGTTCGTAGACCCCTGATTTCG
GAATATGACACCTTAGCTATTTCCTTTTTATTCATAAACATTTTGCGTTC
TGCTTGAGTTTCGGACGGAATTTTGATTATAGCTCGAATTTCTTAAACTT
TAAAACCAATACAGACCAATAGCTTATTTGTTGATAACACTACCGAGAAA
CTTTGACTCGAAGTcatattattgaaaatattgaaaatatttgtcttttt
tttcctCAGAACAACACTACCAAAACGTACTTTCGGACATTTACGATAAA
ATCGAAAACACatcaaaaccaaatcaaaaGGAAGAGGCACCAGAAGACAT
CTATAAACGCTCTTTACATTTCATCAACGCCAAATATCAAGAAACCTGTC
CCAAATGTTCTGGCCTTGCAAAACAAAACTCACGAAACATTTTGCTGAAG
ACCCTCTCTATCTATGATCAAGCGAGATTTTCTAAGAAAGCTTGTCTATC
TTTCACCACGCAGCACAGAGGAAGAATTGTACAAATTACAATGACCTTGC
CTTGCCCTAAATGTTGTTCGAAATCGTAAGTTGATTGAGATTAAAGGGAT
ATGATGGGACAATTTTAGCTTTTGCTTGTTAGACATATTCCCTCCATTAT
TCTAAAATCAAGATCTAATgggaaataaaacaaaacaacaaattatattg
tatgattttcattttctttcgctttcgatttcagaTTACCGGACGGGGAG
TTCATAATTCGGACAACACCTTCTATCGAACATGAATACATTCTGAAAGA
TTTATTATTGACCAATCCACACAAATTCGTGGAAGAATGTCTTTGGAAAT
GGATTGATGACCATTCGTAAGCATTTTAGTTTGCTTCTTCAAATGTTGTG
TTATCACCCCCAATTACATCAGACTGTTTTGATTTGTCTCTACTATTGAG
CAATTGAAGAATACCTTTTGGTAACGGAATGCTGAGTAATCATAAGAACG
CTACTTGTATCTTCTTTAAAAACTTATGAAATTCCATGAACGAAAAATTG
GGTCTGGATGACGGTTCTTATCTGAGGTAAATACTGTGAGTGACGTCATT
TATTTGTCTCGATTCATTTGGTACTTGGTTGAGTTTTTCGTTTGTTGAAT
GGAAGGTAAGTGAGGCAAAAAACAATGAACTCGATTATGGTAATTAGACT
GCATCCGAGACACAAGCCCAAGCTTCCACCAATTGTTGCTGAAAGTTGAA
TGAAAAATTGCATGGTCAGCACATTTCTTGTCAAAGAATTAGAGgtatca
atatttttatatttctaCCTTGTTGAAGCATTATTGTTAGGGATTTTCAA
AACTATAACATGCTATTTTAAAAAGAAGATCAGGCTggaattattttatg
ttttaattttctggTCAAGAAGTGTGTACATTTATTGATCGCCTCAAGCT
TTCAACTGCCGTGTACTGACGTGAATTCTCTACAAAGGGACTTAAAATTC
TTACTCTATTGTGCATATTTTGGACGATAAAATTTCTCACCTAACAACAC
TTTCCAATCTACGGATGGcgttaatttttcttttgtataaATCACATCTG
CGAAAGCGATATTCAGACCTACAACATTATGGCTGAAGATGTAAAGAGAT
AGATGGAAGACTTTATTAATTAGATAATCCCTAGATGTTTATGTATGATC
ATGCTCTATAGTCATACGAGGAAGACTCTTTCTTCCATGATTATGGTATA
ACAAAGGGATAATTCCCTTCATGGATCTAGAGTCTTCACTTACAGTATGT
TAACTCTTCCACATACCAAATTTGTTTACCTATTTTTCAAGACAACAACT
TTTCTAACGATTGAAGTGCCCTAAAACCCTGAGGTAATATTAATAACCGA
ATATTAACGTTTGAGNGCCGGACGGGGAGTTCATAATTCGGACAACACCT
TCTATCGAACATGAATACATTCTGAAAGATTTATTATTGACCAATCCACA
CAAATTCGTTGAAGAATGTCTTTGGAAATGGATCGATGACCATTCGTAAG
CATTTTAACTTGCTTCATCGAATGTTGTGTTATCACCCCCAATTACATCA
GACTGTTTTGATTTGTCTCTACTATTGAGCAATTGAAGAATACCTTTTGG
TAACGGAATGCTGAGTAATCATAAGAACGCTACTTGTATCTTCTTTAAAA
ACTTATGAAATTCCATGAACGAAAAATTGGGTCTGGATGACGGTTCTTAT
CTGAGGTAAATACTGTGAGTGACGTCATTTATTTGTCTCGATTCATTTGG
TACTTGGTTGAGTTTTTCGTTTGTTGAATGGAAGGTAAGTGAGGCAAAAA
ACAATGAACTCGATTATGGTAATTAGACTGCATCCGAGACACAAGCCCAA
GCTTCCACCAATTGTTGCTGAAAGTTGAATGAAAAATTGCATGGTCAGCA
CATTTCTTGTCAAAGAATTAGAGgtatcaatatttttatatttctaCCTT
GTTGAAGCATTATTGTTAGGGATTTTCAAAACTATAACATGCTATTTTAA
AAAGAAGATCAGGCTggaattattttatgttttaattttctggTCAAGAA
GTGTGTACATTTATTGATCGCCTCAAGCTTTCAACTGCCGTGTACTGACG
TGAATTCTCTACAAAGGGACTTAAAATTCTTACTCTATTGTGCATATTTT
GGACGATAAAATTTCTCACCTAACAACACTTTCCAATCTACGGATGGcgt
taatttttcttttgtataaATCACATCTGCGAAAGCGATATTCAGACCTA
CAACATTATGGCTGAAGATGTAAAGAGATAGATGGAAGACTTTATTAATT
AGATAATCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007553TCONS_00007553Clytia hemisphaericatranscript
TCONS_00007554TCONS_00007554Clytia hemisphaericatranscript
TCONS_00007555TCONS_00007555Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007554-proteinTCONS_00007554-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:151037..154845 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.52	65.86	47.1	44.3	6.72	6.52	7.81	8.29	6.69	5.51	5.56	5.76	3.28	3.8	4.1	6.38	8.21	7.8	2.99	3.37	7.13	5.43	33.8	26.9	6.17	5.15	3.67	3.13	17.63	18.35