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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007554 ID=TCONS_00007554|Name=TCONS_00007554|organism=Clytia hemisphaerica|type=transcript|length=1617bp
ctgatatgaaatatgtgtctgatatgaaacaggaacacttatgtaaaaat
aacccctttaattaattttttagacGAATTATAAAAATGAGAGCAGCAGC
AGTACCAGCGGACGAATTGAATCACCGCGCGtcagaaaatgagaaaattt
tgctAATTCTAAATCCACATTTACCATCAGCTTTCAAAGCCAAACCGAAA
ATCAAACATGATTATTTGGCTTCTGATGAAacagaacaaaagaaaagaca
AGTTTCTTCGTTAAAAGAAGTTGGCTCAAAACTTTGTGATGAGTTTTTGG
AAAAACATGATCATTTCAATGCGGAAGAGATTTCACAAAGTTTTGGTGAA
GAACAACACTACCAAAACGTACTTTCGGACATTTACGATAAAATCGAAAA
CACatcaaaaccaaatcaaaaGGAAGAGGCACCAGAAGACATCTATAAAC
GCTCTTTACATTTCATCAACGCCAAATATCAAGAAACCTGTCCCAAATGT
TCTGGCCTTGCAAAACAAAACTCACGAAACATTTTGCTGAAGACCCTCTC
TATCTATGATCAAGCGAGATTTTCTAAGAAAGCTTGTCTATCTTTCACCA
CGCAGCACAGAGGAAGAATTGTACAAATTACAATGACCTTGCCTTGCCCT
AAATGTTGTTCGAAATCaTTACCGGACGGGGAGTTCATAATTCGGACAAC
ACCTTCTATCGAACATGAATACATTCTGAAAGATTTATTATTGACCAATC
CACACAAATTCGTGGAAGAATGTCTTTGGAAATGGATTGATGACCATTCG
TAAGCATTTTAGTTTGCTTCTTCAAATGTTGTGTTATCACCCCCAATTAC
ATCAGACTGTTTTGATTTGTCTCTACTATTGAGCAATTGAAGAATACCTT
TTGGTAACGGAATGCTGAGTAATCATAAGAACGCTACTTGTATCTTCTTT
AAAAACTTATGAAATTCCATGAACGAAAAATTGGGTCTGGATGACGGTTC
TTATCTGAGGTAAATACTGTGAGTGACTGACGTCATTTATTTGTCTCGAT
TCATTTGGTACTTGGTTGAGTTTTTCGTTTGTTGAATGGAAGGTAAGTGA
GGCAAAAAACAATGAACTCGATTATGGTAATTAGACTGCATCCGAGACAC
AAGCCCAAGCTTCCACCAATTGTTGCTGAAAGTTGAATGAAAAATTGCAT
GGTCAGCACATTTCTTGTCAAAGAATTAGAGgtatcaatatttttatatt
tctaCCTTGTTGAAGCATTATTGTTAGGGATTTTCAAAACTATAACATGC
TATTTTAAAAAGAAGATCAGGCTggaattattttatgttttaattttctg
gTCAAGAAGTGTGTACATTTATTGATCGCCTCAAGCTTTCAACTGCCGTG
TACTGACGTGAATTCTCTACAAAGGGACTTAAAATTCTTACTCTATTGTG
CATATTTTGGACGATAAAATTTCTCACCTAACAACACTTTCCAATCTACG
GATGGcgttaatttttcttttgtataaATCACATCTGCGAAAGCGATATT
CAGACCTACAACATTATGGCTGAAGATGTAAAGAGATAGATGGAAGACTT
TATTAATTAGATAATCC Run BLAST on NCBI protein sequence of TCONS_00007554-protein >TCONS_00007554-protein ID=TCONS_00007554-protein|Name=TCONS_00007554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MRAAAVPADELNHRASENEKILLILNPHLPSAFKAKPKIKHDYLASDETE
QKKRQVSSLKEVGSKLCDEFLEKHDHFNAEEISQSFGEEQHYQNVLSDIY
DKIENTSKPNQKEEAPEDIYKRSLHFINAKYQETCPKCSGLAKQNSRNIL
LKTLSIYDQARFSKKACLSFTTQHRGRIVQITMTLPCPKCCSKSLPDGEF
IIRTTPSIEHEYILKDLLLTNPHKFVEECLWKWIDDHS Run BLAST on NCBI transcript from alignment at sc0000078:151068..154845+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007554 ID=TCONS_00007554|Name=TCONS_00007554|organism=Clytia hemisphaerica|type=transcript|length=3778bp|location=Sequence derived from alignment at sc0000078:151068..154845+ (Clytia hemisphaerica)
ctgatatgaaatatgtgtctgatatgaaacaggaacacttatgtaaaaat
aacccctttaattaattttttagacGAATTATAAAAATGAGAGCAGCAGC
AGTACCAGCGGACGAATTGAATCACCGCGCGtcagaaaatgagaaaattt
tgctAATTCTAAATCCACATTTACCATCAGCTTTCAAAGCCAAACCGAAA
ATCAAACATGATTATTTGGCTTCTGATGAAacagaacaaaagaaaagaca
AGTTTCTTCGTTAAAAGAAGTTGGCTCAAAACTTTGTGATGAGTTTTTGG
AAAAACATGATCATTTCAATGCGGAAGAGATTTCACAAAGTTTTGGTGAA
GGTATTATTAACCCTTTCAGTGTTGGCAAATGCCGACATGAGCACTTTCC
ATCTATTTGCCAATGACGGCATTTTGCCGACATGAAGTTTATTGAAAGTT
CGATTTCGAACTAGATTTCATTAAAATGGCACAGTTGATAATGAAACATA
TTTCAAAGATGTGTTTCATTCATAGTTATACattttcaactcaaaattat
attttacagAAAATGAAGCTAATTGTGATAGTTAACTCTGTGGTCAATCA
TGTCTGCATACTGAtgtctggcaaataggtcgaaccttcatTTTTCCCGT
GGAAACATACATACTTTCCTCTAACACTAACACGACTTAactttttagca
ttttaaaagaatttatttcAGTGGAAAATAGGTNACTAACACGACTTAAC
TTTTTagtattttaaaagaatttatttcagtggaaaataggtcgaacctt
taAAAAACGCATAGTTCAAGGGTTAAGgagttttatcttttttccttata
tttgtAACCATAAGTCATGGTTGTTTTAGGTTTTGTAGATAGCCCGGGTA
CTTCTACAGTAGAAGATATTCTTTCGATTGTATTCACGAGTCCATTTGGT
TCGTAGACCCCTGATTTCGGAATATGACACCTTAGCTATTTCCTTTTTAT
TCATAAACATTTTGCGTTCTGCTTGAGTTTCGGACGGAATTTTGATTATA
GCTCGAATTTCTTAAACTTTAAAACCAATACAGACCAATAGCTTATTTGT
TGATAACACTACCGAGAAACTTTGACTCGAAGTcatattattgaaaatat
tgaaaatatttgtcttttttttcctCAGAACAACACTACCAAAACGTACT
TTCGGACATTTACGATAAAATCGAAAACACatcaaaaccaaatcaaaaGG
AAGAGGCACCAGAAGACATCTATAAACGCTCTTTACATTTCATCAACGCC
AAATATCAAGAAACCTGTCCCAAATGTTCTGGCCTTGCAAAACAAAACTC
ACGAAACATTTTGCTGAAGACCCTCTCTATCTATGATCAAGCGAGATTTT
CTAAGAAAGCTTGTCTATCTTTCACCACGCAGCACAGAGGAAGAATTGTA
CAAATTACAATGACCTTGCCTTGCCCTAAATGTTGTTCGAAATCGTAAGT
TGATTGAGATTAAAGGGATATGATGGGACAATTTTAGCTTTTGCTTGTTA
GACATATTCCCTCCATTATTCTAAAATCAAGATCTAATgggaaataaaac
aaaacaacaaattatattgtatgattttcattttctttcgctttcgattt
cagaTTACCGGACGGGGAGTTCATAATTCGGACAACACCTTCTATCGAAC
ATGAATACATTCTGAAAGATTTATTATTGACCAATCCACACAAATTCGTG
GAAGAATGTCTTTGGAAATGGATTGATGACCATTCGTAAGCATTTTAGTT
TGCTTCTTCAAATGTTGTGTTATCACCCCCAATTACATCAGACTGTTTTG
ATTTGTCTCTACTATTGAGCAATTGAAGAATACCTTTTGGTAACGGAATG
CTGAGTAATCATAAGAACGCTACTTGTATCTTCTTTAAAAACTTATGAAA
TTCCATGAACGAAAAATTGGGTCTGGATGACGGTTCTTATCTGAGGTAAA
TACTGTGAGTGACGTCATTTATTTGTCTCGATTCATTTGGTACTTGGTTG
AGTTTTTCGTTTGTTGAATGGAAGGTAAGTGAGGCAAAAAACAATGAACT
CGATTATGGTAATTAGACTGCATCCGAGACACAAGCCCAAGCTTCCACCA
ATTGTTGCTGAAAGTTGAATGAAAAATTGCATGGTCAGCACATTTCTTGT
CAAAGAATTAGAGgtatcaatatttttatatttctaCCTTGTTGAAGCAT
TATTGTTAGGGATTTTCAAAACTATAACATGCTATTTTAAAAAGAAGATC
AGGCTggaattattttatgttttaattttctggTCAAGAAGTGTGTACAT
TTATTGATCGCCTCAAGCTTTCAACTGCCGTGTACTGACGTGAATTCTCT
ACAAAGGGACTTAAAATTCTTACTCTATTGTGCATATTTTGGACGATAAA
ATTTCTCACCTAACAACACTTTCCAATCTACGGATGGcgttaatttttct
tttgtataaATCACATCTGCGAAAGCGATATTCAGACCTACAACATTATG
GCTGAAGATGTAAAGAGATAGATGGAAGACTTTATTAATTAGATAATCCC
TAGATGTTTATGTATGATCATGCTCTATAGTCATACGAGGAAGACTCTTT
CTTCCATGATTATGGTATAACAAAGGGATAATTCCCTTCATGGATCTAGA
GTCTTCACTTACAGTATGTTAACTCTTCCACATACCAAATTTGTTTACCT
ATTTTTCAAGACAACAACTTTTCTAACGATTGAAGTGCCCTAAAACCCTG
AGGTAATATTAATAACCGAATATTAACGTTTGAGNGCCGGACGGGGAGTT
CATAATTCGGACAACACCTTCTATCGAACATGAATACATTCTGAAAGATT
TATTATTGACCAATCCACACAAATTCGTTGAAGAATGTCTTTGGAAATGG
ATCGATGACCATTCGTAAGCATTTTAACTTGCTTCATCGAATGTTGTGTT
ATCACCCCCAATTACATCAGACTGTTTTGATTTGTCTCTACTATTGAGCA
ATTGAAGAATACCTTTTGGTAACGGAATGCTGAGTAATCATAAGAACGCT
ACTTGTATCTTCTTTAAAAACTTATGAAATTCCATGAACGAAAAATTGGG
TCTGGATGACGGTTCTTATCTGAGGTAAATACTGTGAGTGACGTCATTTA
TTTGTCTCGATTCATTTGGTACTTGGTTGAGTTTTTCGTTTGTTGAATGG
AAGGTAAGTGAGGCAAAAAACAATGAACTCGATTATGGTAATTAGACTGC
ATCCGAGACACAAGCCCAAGCTTCCACCAATTGTTGCTGAAAGTTGAATG
AAAAATTGCATGGTCAGCACATTTCTTGTCAAAGAATTAGAGgtatcaat
atttttatatttctaCCTTGTTGAAGCATTATTGTTAGGGATTTTCAAAA
CTATAACATGCTATTTTAAAAAGAAGATCAGGCTggaattattttatgtt
ttaattttctggTCAAGAAGTGTGTACATTTATTGATCGCCTCAAGCTTT
CAACTGCCGTGTACTGACGTGAATTCTCTACAAAGGGACTTAAAATTCTT
ACTCTATTGTGCATATTTTGGACGATAAAATTTCTCACCTAACAACACTT
TCCAATCTACGGATGGcgttaatttttcttttgtataaATCACATCTGCG
AAAGCGATATTCAGACCTACAACATTATGGCTGAAGATGTAAAGAGATAG
ATGGAAGACTTTATTAATTAGATAATCC Coding sequence (CDS) from alignment at sc0000078:151068..154845+ >TCONS_00007554 ID=TCONS_00007554|Name=TCONS_00007554|organism=Clytia hemisphaerica|type=CDS|length=2151bp|location=Sequence derived from alignment at sc0000078:151068..154845+ (Clytia hemisphaerica)
ATGAGAGCAGCAGCAGTACCAGCGGACGAATTGAATCACCGCGCGtcaga
aaatgagaaaattttgctAATTCTAAATCCACATTTACCATCAGCTTTCA
AAGCCAAACCGAAAATCAAACATGATTATTTGGCTTCTGATGAAacagaa
caaaagaaaagacaAGTTTCTTCGTTAAAAGAAGTTGGCTCAAAACTTTG
TGATGAGTTTTTGGAAAAACATGATCATTTCAATGCGGAAGAGATTTCAC
AAAGTTTTGGTGAAGAACAACACTACCAAAACGTACTTTCGGACATTTAC
GATAAAATCGAAAACACatcaaaaccaaatcaaaaGGAAGAGGCACCAGA
AGACATCTATAAACGCTCTTTACATTTCATCAACGCCAAATATCAAGAAA
CCTGTCCCAAATGTTCTGGCCTTGCAAAACAAAACTCACGAAACATTTTG
CTGAAGACCCTCTCTATCTATGATCAAGCGAGATTTTCTAAGAAAGCTTG
TCTATCTTTCACCACGCAGCACAGAGGAAGAATTGTACAAATTACAATGA
CCTTGCCTTGCCCTAAATGTTGTTCGAAATCaTTACCGGACGGGGAGTTC
ATAATTCGGACAACACCTTCTATCGAACATGAATACATTCTGAAAGATTT
ATTATTGACCAATCCACACAAATTCGTGGAAGAATGTCTTTGGAAATGGA
TTGATGACCATTCGTAAATGAGAGCAGCAGCAGTACCAGCGGACGAATTG
AATCACCGCGCGtcagaaaatgagaaaattttgctAATTCTAAATCCACA
TTTACCATCAGCTTTCAAAGCCAAACCGAAAATCAAACATGATTATTTGG
CTTCTGATGAAacagaacaaaagaaaagacaAGTTTCTTCGTTAAAAGAA
GTTGGCTCAAAACTTTGTGATGAGTTTTTGGAAAAACATGATCATTTCAA
TGCGGAAGAGATTTCACAAAGTTTTGGTGAAGAACAACACTACCAAAACG
TACTTTCGGACATTTACGATAAAATCGAAAACACatcaaaaccaaatcaa
aaGGAAGAGGCACCAGAAGACATCTATAAACGCTCTTTACATTTCATCAA
CGCCAAATATCAAGAAACCTGTCCCAAATGTTCTGGCCTTGCAAAACAAA
ACTCACGAAACATTTTGCTGAAGACCCTCTCTATCTATGATCAAGCGAGA
TTTTCTAAGAAAGCTTGTCTATCTTTCACCACGCAGCACAGAGGAAGAAT
TGTACAAATTACAATGACCTTGCCTTGCCCTAAATGTTGTTCGAAATCaT
TACCGGACGGGGAGTTCATAATTCGGACAACACCTTCTATCGAACATGAA
TACATTCTGAAAGATTTATTATTGACCAATCCACACAAATTCGTGGAAGA
ATGTCTTTGGAAATGGATTGATGACCATTCGTAAATGAGAGCAGCAGCAG
TACCAGCGGACGAATTGAATCACCGCGCGtcagaaaatgagaaaattttg
ctAATTCTAAATCCACATTTACCATCAGCTTTCAAAGCCAAACCGAAAAT
CAAACATGATTATTTGGCTTCTGATGAAacagaacaaaagaaaagacaAG
TTTCTTCGTTAAAAGAAGTTGGCTCAAAACTTTGTGATGAGTTTTTGGAA
AAACATGATCATTTCAATGCGGAAGAGATTTCACAAAGTTTTGGTGAAGA
ACAACACTACCAAAACGTACTTTCGGACATTTACGATAAAATCGAAAACA
CatcaaaaccaaatcaaaaGGAAGAGGCACCAGAAGACATCTATAAACGC
TCTTTACATTTCATCAACGCCAAATATCAAGAAACCTGTCCCAAATGTTC
TGGCCTTGCAAAACAAAACTCACGAAACATTTTGCTGAAGACCCTCTCTA
TCTATGATCAAGCGAGATTTTCTAAGAAAGCTTGTCTATCTTTCACCACG
CAGCACAGAGGAAGAATTGTACAAATTACAATGACCTTGCCTTGCCCTAA
ATGTTGTTCGAAATCaTTACCGGACGGGGAGTTCATAATTCGGACAACAC
CTTCTATCGAACATGAATACATTCTGAAAGATTTATTATTGACCAATCCA
CACAAATTCGTGGAAGAATGTCTTTGGAAATGGATTGATGACCATTCGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007554-exon-sc0000078-1491911889:151068..151418 | TCONS_00007554-exon-sc0000078-1491911889:151068..151418 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1510915933:151068..151418 | TCONS_00007554-exon-sc0000078-1510915933:151068..151418 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1575043694:151068..151418 | TCONS_00007554-exon-sc0000078-1575043694:151068..151418 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1491911889:152246..152561 | TCONS_00007554-exon-sc0000078-1491911889:152246..152561 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1510915933:152246..152561 | TCONS_00007554-exon-sc0000078-1510915933:152246..152561 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1575043694:152246..152561 | TCONS_00007554-exon-sc0000078-1575043694:152246..152561 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1491911889:152721..153080 | TCONS_00007554-exon-sc0000078-1491911889:152721..153080 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1510915933:152721..153080 | TCONS_00007554-exon-sc0000078-1510915933:152721..153080 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1575043694:152721..153080 | TCONS_00007554-exon-sc0000078-1575043694:152721..153080 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1491911889:154256..154845 | TCONS_00007554-exon-sc0000078-1491911889:154256..154845 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1510915933:154256..154845 | TCONS_00007554-exon-sc0000078-1510915933:154256..154845 | Clytia hemisphaerica | exon |
| TCONS_00007554-exon-sc0000078-1575043694:154256..154845 | TCONS_00007554-exon-sc0000078-1575043694:154256..154845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:151068..154845 + |
Blast
The following BLAST results are available for this feature:
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