XLOC_003331 (gene) - C. hemisphaerica

Overview
NameXLOC_003331
Unique NameXLOC_003331
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000061:227086..234532+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003331 ID=XLOC_003331|Name=XLOC_003331|organism=Clytia hemisphaerica|type=gene|length=7447bp|location=Sequence derived from alignment at sc0000061:227086..234532+ (Clytia hemisphaerica)
GTTAGGAgaacaacaaaaaatataaaaattgaaaaaaatgttgcaaGTTG TAAGTGGTTGATTATAGAGATTCTTCAGATTTGGTGGTTGTTTAAAGTGA TTTGTTGGGATATTGATCACTTTAAAAAGATGGCAAGCACATTGATTTCA GCTGAACTACCACCTGATGTCGACCCTACCAAAGCCAGATTGGCTTACGG ACAAAGAGCAATTCCCAAATTGGTACGTTACTTTAGATTATTCTCGTTGT AATGTCTTTTAAAATCTTGgtttaaaatatatttgggacttTGGTATCAA ATTTTAATAGTAGGCCGAAAAAGTAGAATAGACTATTTCAGAAATattct gtaccccctatgttgaggtgTGACATCcggggtggtctggaaaatagaAA ATCCAGGGGGATCTGATTTTTCGAGTTCAAAAATCCTggttggtcagtaa aatgaggttgaaaatccagggtggtcagtaaaatgaggttgaaaatccag aGTGGTCAATACAACGAGGTCAAAAATCTAGGGGTATCACTTTTCCcaaa aagacctcctcaacatagggggtacacattttttcttgaatatccaaata aagaGTGTAATTTTCTAGTATCATAGCCAAGAGACAACGTTACTTGGGTT GGTGTTGGTGATGACAAAAAGTTGCTATAAATTTTTTCACACAATAAGTT CAGATGTTGACCTCTTTATAGAGGTTATAGAGAGAGGGTATATAGATTAT TATATAATACCTCTTTAAGGTTTTTCTGTGATATATTCAACGTTTCTTTT CCTCCTCAACCATGGTACAGGACGAGGAGTTGAATTCAACAGATTTGCAT ACACAACAAAAAGCTTTGATGGCTTTATGTGATGCTCTACATGACCCAGA GAAAATCTCCACCGCAATAGAATGCTGTAAGTGTTGACCTTCTGATTGAC GGACGCTCCTAAGCATAGTTTGTTTTTCTTAGGATCGTCTCAtttaattt tcacttttcacTGCTTTTTATTGAATGATGGCTTTCAGTACTTACCATTG TCTGTTGttatagtaagtaagtctgcgactcccggggggggcactgggtt tgcggactgacggtatgtgcgggccaaaaattggcttttaaaattgcacc cttacagtgcagcaaaaatcagtgaaaatcatacccttagagtgcatttt ccccaaaattttctatccttttcgtgcaaaaaatggtcaagattctagca tttttggtcacaatatctagatttttcaaaaattttctgaaatttctacc cttacagcgCAGGCGGCAAAaacccacccttacagtgcatttcggatgtc ttgaaaaatacacccttagtgcccgcacatacccgtcagtcattttgctt ggctgccccccccccgggctgcgACTGCATTCGGAAGCGCCCCAAagact cctctttcgatagctatctacccgaagataGGAGAGGGCACCActttttc tccctggatttctccacttacccttgatccttctcttaattgcttagcat caagcagagaggcatcaagtaccattttgagagtctttggtatgacccgg ctgggggttgcaACAACAACCCACAACCTTACAacccgtagccggatgct ctaccactgcactatggTTGTTATACACAGTTAGGAGGAGAACCATACTA ATCGGGTTCCTACCTTAATGAATATTAGTACAGACAGACTAAATCAATAG ATCATTTTTAAGAccaggtttttttttttcgagatGGAGAGATGCTCAAG ATAAATGCTAGTCGATATAGGTCCACGCCACTGTTAATAGTATCCAGAGA AAAGTATTAAACTCTGAAGAGGTTTCGGTTAACTAGACTAAAATATTCAC TTTATTTCATTGGTTCTTATTATTTTCAGCCATCGTTCAATCGTTGAAGA AATTGTTATCAAGTAAAGATGCAGTTGTCCGAATGAAAGCTACCGAATGT AAACTCATCATTTCAGGTAAGTAACACATTCTGTTTCCATCTACGTAATC ATATTTTAAAGCTGGCTACTTAATGAAGTATTATTCCTatgttttattaa aaaagtcCTTCTCGAGTAGATTTTTATGCTTTTAGGCCTCTAAACAAAGG ATGAAATATCACGGGAGATATGACTTTGAAGGTTTTTTTGTTTGGTTAAA ACTGATTAGACCATCAAATAGAAATGGATGAAGAAAAGATTTCCTAAATT GGGTCTATTTTGTCTGATTTTTCTAATTCTTGTCGACTTAGTCCCCTGGA ATGGTAAAACATCTAATAAATGCATCTAAAATTTACTGTCATTATTTTTC CAGAAATTGAACTTCTATTTTTTATCATCTCAAATTAGGTCATTCAATTG GAAGACAAGCACTCATAGATGTTGGTGCCATCAAACCTTTATCGAAACTG GTAAGGTATCACATCCTTGTCATGTGACGTTTTGTCTCTTTGGGATCAAG ATTCCCCTGAATTTCTAGTAAAGAGTACTTTTCTACGAGTAGAGAATTTG AATACTATCAAAATGTTATGTATTTTAAATTACTTTTCAAATTGCTCATT ATTTTAGTTTGACGATGGTTGTAGAGAAGTTCGCGTGAATACCcacaaaa caatggaaatgctCTCCTCTATACCGTTAGGTTGGTTTTATGTTCAGGTT TTCTCAGTAAAACATCAGATTATCCTGGGAGGAAAATTACAAAAGATAAG ACATCTCTAGCTTTCTGGTGCGTCAAGTTTTATGCAAGCTGCAAGGGAAA AACAATACTCTCACTTAGTTGAATGCAGAACTACTGAAAATATCGACTAG CACTAAGATATCACAACAGATATCATATTCCTTTATACACTTTTCCCTTT TATATGGGAAGCCTGATCCAGTCAATAGTTTCAGTGCATATAAGAGAAAT GAATATTGAGTAACAGACCTCATGTTGGTTtaattagactagagtctact tctgactaaacttttctccttgatgattttgatggcgctAAATCCACTGA AGTACTAGAGGAtatcgccatcttgaattttttcactttcgttttcaaaa attccatcaaagtttatgaaactatgtaagaacatgaaaatacctcaaaa atttgaaacaaatggTCTATTGCAGTATTGGTCCGTTTTGGTCATTGTTT TCTGTTTGCTTTTATctaaaaagggactggatctaaTGGCATGGATTTGC TTACACCTCAAGCAAAGACAAAAAATGGAGTCTGCTATAAGTGGCTGGTT TTAAGTTTTTTCGATTTGTATTTTTTAGGCGCTGAAGCCATCGTAGAATG CGGATTGATTGGTGTTTTGATCAAGAAACTTGCTGATGACAGTACGGACG ATATAAAGGTGATATATCATATTGCTCGATATAAATCGGTAGTTCCGCTT TTGACAACCGACATTTTAAAACGAAAGAAATTCAGCTAAAGTCGATTGAC GTGTACAGTCTTTAAGCTTATCTTATTAAAAGTATTTAAAGGCTGGGctt ctccactttcgcgcgaaatgagcGAGAACTTTTTAACGTCTTTGTAAAGT CATTggttggttgaaaaatgaagcaattccattgggaAAATCTGACATTA TTTTTCGCTCGAAACTTTTTTAATGACGCAATCTTTTTTGCAGGCAAAAA TGGTTGACAAAAAGTTTTCGTTCATTTTCAAAGTGCACCGCGGCTGGCTT AAACTATTCGGGCTTTTTAATTAACACTGTATCTTTGCTGTGAATACATG TCTACCTGTTTTCGTGTTATAATGTATTTACCAGCAACGCAACACATTTA TCCGTTTTGCGTCTatcttaaggtggtagtctactgagaaatggaaaatc atcgaaaaaattgtcgaatNNTGAAGAATAGACCCTACAGAAGCTATAAA GTTGCTGTACATTGGTTATGTTGCTGGATTTCTacgaaaaacatttaagt tgccgccattttgttttgagcataTAGGCGGTGTGCTTTTGGTGGCTCAC ATTATGTTTTGTAGTGGATTTAAATGTaactgagatatttccaagcacaa catgatgtaacagagATGGAAATAtgcattataatgaactggaccTAACT TCTGGAGACGCACATTCTCATCTGACACCCGCCACTCATAACAGCCTTCC TTCGGTCAAGCCAGCTCATTGCTCATTNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNttgtggaaagtttcattgagatatcttaaatatttcaaa agttattacaaaaaaagtaaaaaaatgactttttccatttctcagtagac taccaccttaaaggACGCTTTTTCATCACTTGAACTGATCGTCCCTCTCT TCTTTTATCTTTCTCAGTTATTAATTCTGGACACTCTACACCGTTGTATG CGGGTGAAACACCAAGAAGCCCTGGAATGCGATGCAATGGCAATCTTTAC ATCTCTATTGAACAGCCCTGATCGTGAAATTCGCGCCAAAGCCGCCATGG ACGTTAAAGAGCTCAGGTTAGAATGCTTTAAGATATTGATGATGATGTAC GACCCATAAGAAGCACAATTAACGATAGTTTTTCAAATCGTCGTTCGCGC GGTATGGAAGGGGTGTAAATTAGGGATATTTAAATGGCTGTGTAAGCCTG TAGATGCCTTAATTTAGCTTATTTTCTCTAGTTTACAGATTAATTTCTTA GATTTTGCCCGTggttattgaaaagaagaattgaGAAAAACTTCCTTTGG CCAATTTACTTTCGCTAATCATCACTGTCTTGTCAGCGTTTGAGTTTGAG CGCTGCATGCTGCAAGTAATCTTAGTAAACTCGTAAGTAAGTATAAGTAA ACTCATGTTTGTTTTAGTTTCCCGACAGCAGGGAAAGACAAAGCGTGTCA GGAAGGGACGNTGTTTGTTTTAGTTTCCCGACAGCAGGGAAAGACAAGGC GTGTCAGGAAGGGACGGTGGCATCTCTCTGTCGTTTATTGTCTGATGATT TTATGGATGTCAAGTCACAAGCATGCGCTGCCCTCATGGTGTAAGTCTTT ATATTCTTTTTGAATATCTCTTGAATCACTAATGTTGCAAAAGCTGTCTG ATTGAAAGTGATGAAGTTGCATTTCCGTCTCGCGTTTCAAATTTGTCTCT TTTCATTTCTGGAAATTATACACTGCCcataccgggtgtttcaaagaagt gtacaagtttgaattaagattttgcgaaaactaaaaatgttgtaACTTTT CGTCATCAAAAAGAGGAAAGgctgacttaaattttgagctatcatattTG GAATTTGCTTCActtgttcaaaagttatgaagaaaattcgaaaaaactgg aaaaaattctctttcgaAAAATCGTCATGTAGAAGCGTCTTGTACAAgtt ttttgaaacacccggtagcaagaatttctttttatcctttttcgttttta taaCAAAACCCGCCAATACTTCAGTGTTAATTTTTAAATGCCCTAAGACA GAGGAAAAATTAAGTTTATGGGAATAGTAGACAAGTTTTAACAAAATCAT GTTCCCCTATTTTTCATCAgtatattatttattattttacagAATCACCA TCACGACGCACGGCAAATATTTGGCATTAGATGCAAACGCTCTTCCGCGA TTATTGAAACTGCTTAAAGAACCATCCGTTGAACTCCGCTTAAATGCATT GAAAGCGCTCACTACGCTGTCTGAAGCGCCGAAAGCACGCTCGGAACTTT TGAGATCTTTGACAGATATAGTAGAATTGAAAAACGATCCTGACAGTCAG GCTATTCGAAAAGCCGCCCAGATTGCTGAGCGAACAATCACTTGGAAACC TTAGATATTTATTACTTATTAATAACCTTATGATTTCTGGCATTTGTTTT CTATCGACTAACTTAATGGTCACGCTGTACTTATATTCCCCAACTCCACT GAATATATTTCGTCTTCTAAGACCTCAGGTTGCAGAGACCACTTTCGTGA CTTTGATATATTATGGAAAAATCTCATCTATTTGTATTTGCAGAGTGACC ATATATTATAGTCAATGGAGACTTTGCAAGCATTTTGCACATTTCATTTC TATACTGTAAATATTTAAAAGTGTGTTTAGGTTTTTAGCTACCCATTCAC ATTATGGTTGTACATAAAGtttattaaaaagtttttactgGGTGTAAATT ATTCGAGACTaatataatgaaaaataattgaacgATTGATATTTGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005838TCONS_00005838Clytia hemisphaericatranscript
TCONS_00005839TCONS_00005839Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005838-proteinTCONS_00005838-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:227086..234532 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
RSPH14PREDICTED: rhabdoid tumor deletion region protein 1 isoform X2 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12 9.62 77.86 86.71 140.86 108.55 70.76 70.16 56.79 59.74 50.11 54.86 18.09 17.57 15.43 19.73 22.47 24.84 21.55 25.79 19.12 16.68 15.46 16.29 70.53 56.08 20.15 15.86 13.97 14.83