TCONS_00005838-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005838-protein
Unique NameTCONS_00005838-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005838-protein ID=TCONS_00005838-protein|Name=TCONS_00005838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
VRRTTKNIKIEKNVASCKWLIIEILQIWWLFKVICWDIDHFKKMASTLIS
AELPPDVDPTKARLAYGQRAIPKLDEELNSTDLHTQQKALMALCDALHDP
EKISTAIECSIVQSLKKLLSSKDAVVRMKATECKLIISGHSIGRQALIDV
GAIKPLSKLFDDGCREVRVNTHKTMEMLSSIPLGAEAIVECGLIGVLIKK
LADDSTDDIKLLILDTLHRCMRVKHQEALECDAMAIFTSLLNSPDREIRA
KAAMDVKELSFPTAGKDKACQEGTVASLCRLLSDDFMDVKSQACAALMVI
TITTHGKYLALDANALPRLLKLLKEPSVELRLNALKALTTLSEAPKARSE
LLRSLTDIVELKNDPDSQAIRKAAQIAERTITWKP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003331XLOC_003331Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005838TCONS_00005838Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR006911ARM-rpt_dom
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 140..180
e-value: 510.0
score: 0.0
coord: 303..343
e-value: 0.032
score: 23.4
coord: 220..261
e-value: 310.0
score: 1.7
coord: 262..302
e-value: 20.0
score: 10.9
IPR006911Armadillo repeat-containing domainPFAMPF04826Arm_2coord: 218..353
e-value: 2.4E-8
score: 33.7
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 247..375
e-value: 8.9E-18
score: 64.0
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 51..246
e-value: 1.6E-19
score: 69.5
NoneNo IPR availableCDDcd00020ARMcoord: 267..376
e-value: 1.50908E-9
score: 53.8575
NoneNo IPR availableCDDcd00020ARMcoord: 186..297
e-value: 1.81717E-5
score: 41.5312
NoneNo IPR availableCDDcd00020ARMcoord: 68..133
e-value: 0.00128628
score: 36.1384
NoneNo IPR availableCDDcd00020ARMcoord: 107..217
e-value: 4.21225E-4
score: 37.294
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 68..372

Blast
[Close]
BLAST of TCONS_00005838-protein vs. Swiss-Prot (Human)
Match: RSP14 (Radial spoke head 14 homolog OS=Homo sapiens GN=RSPH14 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.761e-69
Identity = 140/348 (40.23%), Postives = 197/348 (56.61%), Query Frame = 0 
Query:   44 MASTLISAELPPDVDPTKARLAYGQRAIPKLDEELNSTDLHTQQKALMALCDALHDPEKISTAIECSIVQSLKKLLSSKDAVVRMKATECKLIISGHSIGRQALIDVGAIKPLSKLFDDGCREVRVNTHKTMEMLSSIPLGAEAIVECGLIGVLIKKL-ADDSTDDIKLLILDTLHRCMRVKHQEALECDAMAIFTSLLNSPDREIRAKAAMDVKELSFPTAGKDKACQEGTVASLCRLLSDDFMDVKSQACAALMVITITTHGKYLALDANALPRLLKLLKEPSVELRLNALKALTTLSEAPKARSELLRSLTDI----VELKNDPD-SQAIRKAAQIAERTITWKP 385
            MA +  S ELP +++ T+   AYG RA+PKL EEL S DL T+QKALMALCD +HDPE I  A+    +++LK LL   +++VR+K TE   I + HS+GR A ++   +  LS L +D     R N +K    L  +P GA+ I+  GLI  L+ KL  +   ++ +  ILDTL  C++    EAL  + + +    L S ++ IR+KAA  +  +S    GK + C    +  L  LL D    VKS A  ALM  T+ T GKY AL+A A+  LL+LL  P    RLNA KALT L+EAP+ R  L   +       VE    P  ++A+++AA+IA   I +KP
Sbjct:    1 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP 348
The following BLAST results are available for this feature:
BLAST of TCONS_00005838-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSP141.761e-6940.23Radial spoke head 14 homolog OS=Homo sapiens GN=RS... [more]
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