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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005838 ID=TCONS_00005838|Name=TCONS_00005838|organism=Clytia hemisphaerica|type=transcript|length=1551bpRun BLAST on NCBI protein sequence of TCONS_00005838-protein >TCONS_00005838-protein ID=TCONS_00005838-protein|Name=TCONS_00005838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp VRRTTKNIKIEKNVASCKWLIIEILQIWWLFKVICWDIDHFKKMASTLISRun BLAST on NCBI transcript from alignment at sc0000061:227086..234532+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005838 ID=TCONS_00005838|Name=TCONS_00005838|organism=Clytia hemisphaerica|type=transcript|length=7447bp|location=Sequence derived from alignment at sc0000061:227086..234532+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:227086..234532+ >TCONS_00005838 ID=TCONS_00005838|Name=TCONS_00005838|organism=Clytia hemisphaerica|type=CDS|length=11580bp|location=Sequence derived from alignment at sc0000061:227086..234532+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005838 vs. Swiss-Prot (Human)
Match: RSP14 (Radial spoke head 14 homolog OS=Homo sapiens GN=RSPH14 PE=1 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 1.590e-62 Identity = 137/348 (39.37%), Postives = 194/348 (55.75%), Query Frame = 1
Query: 130 MASTLISAELPPDVDPTKARLAYGQRAIPKLDEELNSTDLHTQQKALMALCDALHDPEKISTAIECSIVQSLKKLLSSKDAVVRMKATECKLIISGHSIGRQALIDVGAIKPLSKLFDDGCREVRVNTHKTMEMLSSIPLGAEAIVECGLIGVLIKKLAXXXXXXXXXXXXX-XXHRCMRVKHQEALECDAMAIFTSLLNSPDREIRAKAAMDVKELSFPTAGKDKACQEGTVASLCRLLSDDFMDVKSQACAALMVITITTHGKYLALDANALPRLLKLLKEPSVELRLNALKALTTLSEAPKARSELLRSLTDI----VELKNDPD-SQAIRKAAQIAERTITWKP 1155
MA + S ELP +++ T+ AYG RA+PKL EEL S DL T+QKALMALCD +HDPE I A+ +++LK LL +++VR+K TE I + HS+GR A ++ + LS L +D R N +K L +P GA+ I+ GLI L+ KL + ++ + TL C++ EAL + + + L S ++ IR+KAA + +S GK + C + L LL D VKS A ALM T+ T GKY AL+A A+ LL+LL P RLNA KALT L+EAP+ R L + VE P ++A+++AA+IA I +KP
Sbjct: 1 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP 348 The following BLAST results are available for this feature:
BLAST of TCONS_00005838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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