XLOC_002743 (gene) - C. hemisphaerica

Overview
NameXLOC_002743
Unique NameXLOC_002743
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000049:24391..29246+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002743 ID=XLOC_002743|Name=XLOC_002743|organism=Clytia hemisphaerica|type=gene|length=4856bp|location=Sequence derived from alignment at sc0000049:24391..29246+ (Clytia hemisphaerica)
GCGTGTAATCCATGCCTTAGGCAAAGATTTGACATTTTTGTGGATTCTTT TAGCATTGCTAGGGAATAATTGTCAATTTGATTGTAAAATGGTCTATAAA agtggcattcttaggttcagttgctaaatttcatgatggtgataatcttt attcttacgatattcttaattattggccattttcatcatggacattctta taaagtatattcttataaaaaagtgtgtattttaATTGTAGgtgtttttt tcctttttttgggCAGGGGGCGGTGTTGGAAGTTGAGCCAATTCAATTCC ATTGCAATAATTTCGACCTTTGCATTTTCCAGAGCTACTTTCCATACCAA ATGATATTTAATGAAGAGGTACCAAGAATAACTAATGAActgattttatc atttttatgcGTCACAGACTGCAACCTTCCATAGAGGTAACTAGTTATAT AGCTACAAACTTGATTTCAGCTTCTGAATAATTTCAAGATACAGATGATG AACATTATCTGACTTAGCAACCGAATTTTGATACTTACTTTACTAATGTA TGAGTCAAtcctattttgtcaaaataaagatttggaaaatttaaagGGAA CCCtcttttattgataaaaaatgaggaaaatatcaaaaaaccaCTTTAAC AAAGTAAATCCCGAATCGAAAGATTAAGTGgaaataaaatcaagcaaaat aagaaaataatggaactctaaatcggaatagaatggaagatttagtagtc ataaaaaaattcttgaacttAAAAAACTATCGTTTATAGAAACCTCAAAG GGAGGACTTATTATTTTGTGGCATTATGAGCCATTTTATGTATCTCTCTT TGTATAGTAATGTCTCTTTACTTtgcttttcttcttttcttaaaCAAGTT CCCCCtttgaaaaacaacaaattctttcggttaaaattttttttctagga TTTTAAATTATTAATTGCTGAAGGGGTTTTGTATGCTAAATTAAAAAATC CTGTCCTTTTTTACCCTATTCCCCCACTTTTATTATTTGTTAATATCGAA TGTATTATTTTGATATCAATTTTATTAtcaatttctattgtttcattatt ttttgtttattgtgTCCGTTGAAAACTCTATTATTTGATGGAGCTGGTAT ATAAAGCAGCAAGATTTCCAATCTCCCCAACAATATTATTTGATCATTGC TTGGCGTTTGATAAATTTCTAATCAATAATATTGATAATCAATATAACCA ATAATCAATCAACAATGACAACAATCAACAAATCAGGTATGTTCTCAAAC TATCTTTTTAGTatgtattttattttgtttgacaGACTTAAATAGCAGTG ATCATTGAGCTTTTTATAACACAGTTAAAAACTGCGACTTTTTTTGGGTG AATTCATAGTGAGAAGCTGCAGAGTTTCAATAATTTACGGTGAAAAGTTG TAATCTTGTGAAAGATGCGCTTCAATTCAGCAGAAGAGTCACAGTGATTC CTCTTTGACTTTTTTCCTGTGAAGATTTCAAGGAACTCGTCCGGCGTTAC TTTATGTAGTTAATCgtattttttatattcaaaatttctAACCCTCTCTG ATCTTTACCCGCAAAACTAACCGAATGAACAATTTATTGTCAGGTCGTCT TTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATT ACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATT CGCAAAAACAAGTAAGAAACGTTCCGCCTACAATTATGTTTAGTCACTGT CTCAATGTTATCAAGTTTGATTGTAATATCTGTAAGGTTGTGATAGCTTT GCCAAAACTAGGGAAGAATAATGGATTTAGCTATTTTGCGCCTGACCCGA GGCGTTCAGAAAGTTTTTCCTCGTTTTACTGCGAAAAACTGCAGCTTCTA CTCTAggtaaaaaaaagacaaaaagaatcCTGGAATTACTGTAGTATTCT GCAGTAGTGAATGTTACTTTGAACTTTCCCTCGTTGCTATCAGAAATTAC TTTCAACTATTGTACTATGATTTTACGACAGCAATTGGGGGTTTGTTTGA GAGATTTTTTGTTAACGTCTGGTGCATCCATACATTCACTAAATTCGACC AAATAGCTTAAAGGAATTTGTAGAAGATATcattcatctgtcgtccagtc ccAAATAAAGAAACTATTTTATGTCTCGCATCTGTCTTTTGCTGTTCTAA GAAATCCGAAAAACCCAATAACGTATCGTTTTAGTAAAAGTTAAAgatct tttcttttgttaacaCACCTGTCATTAGTCTCTCCAAAAGTCAAGGAAAT TGATGATTGAGaacaaaattctaaaataatttttatttatttttcataga aaatacACTTGTCGTCAATCACAACATAATATCGATTTAAATAACAACGA GGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCGATAAAATTCATC GAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTGGAAGTTAACATG AATAAAGATGGTAGGACCTTTTTTAACCTTCTTATTatggttttctttat tttgttattgttccGCTCAATAATATCTTTCCACTTTCATTTACTGAAAA ATCgaaactaaaatttgaaataatatgGCTATGACATTTAGTGACTTTTG AAGAAACGTCATCTATTTCGTTATTTCGAACTCTTATTTTGTATTGTCGA TTTATTGTTGTTCTCAGCTGTCCAGCACGAGCGAGGTCCAAGAAACTCCA CCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATCTTCAC CAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCTGTCGT GTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttgaagatt ttatggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAGATTAC GAAGAGGTTTGTCATTCCGTTCTTTGTTCGAATCTTCGTTTAAATCCTTC GTTTTCGGACTGTTCCATTCTCACCCAAAATTTAGCCCTAAATCTTAAGA TTGGAGCCTACTATTTACTCATGTTAAAcaagttttcattatttttcttg CACAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTATTATTC AAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCTTTACTA CGTTGACCAGGTGAGAATCTCAAATTCAATTTGGTCTTCGGTCTCTTTTT AACAggagaattcatgatatgcaccattgcaatgtcttccacggacccaa cagctgattggttcaacgtgattttacgtcacttaccaccaatcagctat tgggtccgtgatgtaatgtcagaagatattgcaatggtgcaaTAATGAAT ATACTTCAGTCGAACTCCCATAGCTTGATTCTCCATTATTCTTGGATCTG TGTGTTCGGTGTATTTCTAAGACTTTAAACATTGATTTTTAATAGATTAT ACTGATGCAAGAATCTTGGAGCTCGTTATTCCTCATTGCGGCCGTTCAAT GGAGAATAGTATCAGATGACTGGCTTCTAGACTACTTGCGAGATTACGAA GATCGTTTCAGTGAACGCGAAGTGCGCATGCTCAGATATATTGCTGATCT ATTGGCTGATTTGGACCAATTAGACTTGGATGAACGTGAAATGGCTTGTT TGTTATTCATAGGTTTATTTAATCCATGTAAGTAATTTTGTTAGATCCCT NTTTGGATGAGCGTGAAATGGCTTGTTTGTTATTCATAGGACTATTTAAT CCATGTAAGTAATTTTGTTAGATCCCTTTCCGTATTTGCGCATTTAGATG GGTGCAATTATGCCAACCAATGCATTTTCATTCTCCCCATTATCAGTAAC TTCAGCATGATAGACCCATTTTGAGAAATTATCAACCACGATTCCCGAAT GAACCGCCTATGGGTGCTATCAATAATGGTGCATGGGTCGCAGCGCCCCT AGGTCCTTACCAGCGGTATCCAGTTAGAAATTAGTGTGATGGAACGGCAA ACATTCCTCTGGAATGTCTGACAACATTCATCATATCTTTGTATGTAAAA GATTacccaattttccaattttcgaaaatcgaataattattttctttttt ctgcaTTTTAGACATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCAT GGCGTGATCAATGTCAAATGGCTTTGAATGATTATTTAACACGTGATCCA ACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTT ACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAA TTGGTGATATGCATATGGAGACTTTGGTTCGGAATATCTTTCATAGAACC TGATTGGCTGCGGTCGCCGCGATGATTCAAAATTAGATTCTAAAAAGGAT GAATGCatgtaataaaacaaaaatgaaaactttcaaataaatCTGGTATC GAGGCTAACCTCTAGATTATTTAACCGTATTCTGAGGACAAAAAAGACAA CCATGTATCAAGAGCTCTGTGATGACTACATAATTTTTATACGCAGAAAT TACTTTATTAATTAAAactatatataatttttattgatttttaaaataaa taaatcttttAATCGGGGAAGGACATAAAATTTAATTGATCATCTTTTGT TCAAACCTAGTTCTAATTTTAGATAAAAGAAGGGTGTATTCCTATGGTCA AATTTGGTGTGCAACTCTTTTAATTGTCATCCATGTCAAAGAGAATAACA AAAATA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004835TCONS_00004835Clytia hemisphaericatranscript
TCONS_00004836TCONS_00004836Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004836-proteinTCONS_00004836-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:24391..29246 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
NR2E1nuclear receptor subfamily 2 group E member 1 isoform a Homo Sapiens
NR2E3photoreceptor-specific nuclear receptor isoform b Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.7 0.84 0.29 0.33 2.07 1.49 1.96 2.03 1.85 1.17 1.94 2.52 2.84 3 4.01 4.42 3.08 3.31 4.17 6.02 3.79 3.2 1.84 2.47 0.67 0.98 1.48 1.33 1.06 1.01