TCONS_00004835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004835
Unique NameTCONS_00004835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004835 ID=TCONS_00004835|Name=TCONS_00004835|organism=Clytia hemisphaerica|type=transcript|length=3220bp
GCGTGTAATCCATGCCTTAGGCAAAGATTTGACATTTTTGTGGATTCTTT
TAGCATTGCTAGGGAATAATTGTCAATTTGATTGTAAAATGGTCTATAAA
agtggcattcttaggttcagttgctaaatttcatgatggtgataatcttt
attcttacgatattcttaattattggccattttcatcatggacattctta
taaagtatattcttataaaaaagtgtgtattttaATTGTAGgtgtttttt
tcctttttttgggCAGGGGGCGGTGTTGGAAGTTGAGCCAATTCAATTCC
ATTGCAATAATTTCGACCTTTGCATTTTCCAGAGCTACTTTCCATACCAA
ATGATATTTAATGAAGAGGTACCAAGAATAACTAATGAActgattttatc
atttttatgcGTCACAGACTGCAACCTTCCATAGAGGTAACTAGTTATAT
AGCTACAAACTTGATTTCAGCTTCTGAATAATTTCAAGATACAGATGATG
AACATTATCTGACTTAGCAACCGAATTTTGATACTTACTTTACTAATGTA
TGAGTCAAtcctattttgtcaaaataaagatttggaaaatttaaagGGAA
CCCtcttttattgataaaaaatgaggaaaatatcaaaaaaccaCTTTAAC
AAAGTAAATCCCGAATCGAAAGATTAAGTGgaaataaaatcaagcaaaat
aagaaaataatggaactctaaatcggaatagaatggaagatttagtagtc
ataaaaaaattcttgaacttAAAAAACTATCGTTTATAGAAACCTCAAAG
GGAGGACTTATTATTTTGTGGCATTATGAGCCATTTTATGTATCTCTCTT
TGTATAGTAATGTCTCTTTACTTtgcttttcttcttttcttaaaCAAGTT
CCCCCtttgaaaaacaacaaattctttcggttaaaattttttttctagga
TTTTAAATTATTAATTGCTGAAGGGGTTTTGTATGCTAAATTAAAAAATC
CTGTCCTTTTTTACCCTATTCCCCCACTTTTATTATTTGTTAATATCGAA
TGTATTATTTTGATATCAATTTTATTAtcaatttctattgtttcattatt
ttttgtttattgtgTCCGTTGAAAACTCTATTATTTGATGGAGCTGGTAT
ATAAAGCAGCAAGATTTCCAATCTCCCCAACAATATTATTTGATCATTGC
TTGGCGTTTGATAAATTTCTAATCAATAATATTGATAATCAATATAACCA
ATAATCAATCAACAATGACAACAATCAACAAATCAGGTATGTTCTCAAAC
TATCTTTTTAGTatgtattttattttgtttgacaGACTTAAATAGCAGTG
ATCATTGAGCTTTTTATAACACAGTTAAAAACTGCGACTTTTTTTGGGTG
AATTCATAGTGAGAAGCTGCAGAGTTTCAATAATTTACGGTGAAAAGTTG
TAATCTTGTGAAAGATGCGCTTCAATTCAGCAGAAGAGTCACAGTGATTC
CTCTTTGACTTTTTTCCTGTGAAGATTTCAAGGAACTCGTCCGGCGTTAC
TTTATGTAGTTAATCgtattttttatattcaaaatttctAACCCTCTCTG
ATCTTTACCCGCAAAACTAACCGAATGAACAATTTATTGTCAGGTCGTCT
TTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATT
ACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATT
CGCAAAAACAAaaaatacACTTGTCGTCAATCACAACATAATATCGATTT
AAATAACAACGAGGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCG
ATAAAATTCATCGAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTG
GAAGTTAACATGAATAAAGATGCTGTCCAGCACGAGCGAGGTCCAAGAAA
CTCCACCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATC
TTCACCAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCT
GTCGTGTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttga
agattttatggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAG
ATTACGAAGAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTA
TTATTCAAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCT
TTACTACGTTGACCAGATTATACTGATGCAAGAATCTTGGAGCTCGTTAT
TCCTCATTGCGGCCGTTCAATGGAGAATAGTATCAGATGACTGGCTTCTA
GACTACTTGCGAGATTACGAAGATCGTTTCAGTGAACGCGAAGTGCGCAT
GCTCAGATATATTGCTGATCTATTGGCTGATTTGGACCAATTAGACTTGG
ATGAACGTGAAATGGCTTGTTTGTTATTCATAGGTTTATTTAATCCATGT
AAGTAATTTTGTTAGATCCCTNTTTGGATGAGCGTGAAATGGCTTGTTTG
TTATTCATAGGACTATTTAATCCATACATCAGTGCGTTAACAGAACCAGG
AGCTGTCGAATCATGGCGTGATCAATGTCAAATGGCTTTGAATGATTATT
TAACACGTGATCCAACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTA
ATTTTTGGACGCTTACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTT
CTTCAGGAAAGAAATTGGTGATATGCATATGGAGACTTTGGTTCGGAATA
TCTTTCATAGAACCTGATTGGCTGCGGTCGCCGCGATGATTCAAAATTAG
ATTCTAAAAAGGATGAATGCatgtaataaaacaaaaatgaaaactttcaa
ataaatCTGGTATCGAGGCTAACCTCTAGATTATTTAACCGTATTCTGAG
GACAAAAAAGACAACCATGTATCAAGAGCTCTGTGATGACTACATAATTT
TTATACGCAGAAATTACTTTATTAATTAAAactatatataatttttattg
atttttaaaataaataaatcttttAATCGGGGAAGGACATAAAATTTAAT
TGATCATCTTTTGTTCAAACCTAGTTCTAATTTTAGATAAAAGAAGGGTG
TATTCCTATGGTCAAATTTGGTGTGCAACTCTTTTAATTGTCATCCATGT
CAAAGAGAATAACAAAAATA
Run BLAST on NCBI

transcript from alignment at sc0000049:24391..29246+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004835 ID=TCONS_00004835|Name=TCONS_00004835|organism=Clytia hemisphaerica|type=transcript|length=4856bp|location=Sequence derived from alignment at sc0000049:24391..29246+ (Clytia hemisphaerica)
GCGTGTAATCCATGCCTTAGGCAAAGATTTGACATTTTTGTGGATTCTTT
TAGCATTGCTAGGGAATAATTGTCAATTTGATTGTAAAATGGTCTATAAA
agtggcattcttaggttcagttgctaaatttcatgatggtgataatcttt
attcttacgatattcttaattattggccattttcatcatggacattctta
taaagtatattcttataaaaaagtgtgtattttaATTGTAGgtgtttttt
tcctttttttgggCAGGGGGCGGTGTTGGAAGTTGAGCCAATTCAATTCC
ATTGCAATAATTTCGACCTTTGCATTTTCCAGAGCTACTTTCCATACCAA
ATGATATTTAATGAAGAGGTACCAAGAATAACTAATGAActgattttatc
atttttatgcGTCACAGACTGCAACCTTCCATAGAGGTAACTAGTTATAT
AGCTACAAACTTGATTTCAGCTTCTGAATAATTTCAAGATACAGATGATG
AACATTATCTGACTTAGCAACCGAATTTTGATACTTACTTTACTAATGTA
TGAGTCAAtcctattttgtcaaaataaagatttggaaaatttaaagGGAA
CCCtcttttattgataaaaaatgaggaaaatatcaaaaaaccaCTTTAAC
AAAGTAAATCCCGAATCGAAAGATTAAGTGgaaataaaatcaagcaaaat
aagaaaataatggaactctaaatcggaatagaatggaagatttagtagtc
ataaaaaaattcttgaacttAAAAAACTATCGTTTATAGAAACCTCAAAG
GGAGGACTTATTATTTTGTGGCATTATGAGCCATTTTATGTATCTCTCTT
TGTATAGTAATGTCTCTTTACTTtgcttttcttcttttcttaaaCAAGTT
CCCCCtttgaaaaacaacaaattctttcggttaaaattttttttctagga
TTTTAAATTATTAATTGCTGAAGGGGTTTTGTATGCTAAATTAAAAAATC
CTGTCCTTTTTTACCCTATTCCCCCACTTTTATTATTTGTTAATATCGAA
TGTATTATTTTGATATCAATTTTATTAtcaatttctattgtttcattatt
ttttgtttattgtgTCCGTTGAAAACTCTATTATTTGATGGAGCTGGTAT
ATAAAGCAGCAAGATTTCCAATCTCCCCAACAATATTATTTGATCATTGC
TTGGCGTTTGATAAATTTCTAATCAATAATATTGATAATCAATATAACCA
ATAATCAATCAACAATGACAACAATCAACAAATCAGGTATGTTCTCAAAC
TATCTTTTTAGTatgtattttattttgtttgacaGACTTAAATAGCAGTG
ATCATTGAGCTTTTTATAACACAGTTAAAAACTGCGACTTTTTTTGGGTG
AATTCATAGTGAGAAGCTGCAGAGTTTCAATAATTTACGGTGAAAAGTTG
TAATCTTGTGAAAGATGCGCTTCAATTCAGCAGAAGAGTCACAGTGATTC
CTCTTTGACTTTTTTCCTGTGAAGATTTCAAGGAACTCGTCCGGCGTTAC
TTTATGTAGTTAATCgtattttttatattcaaaatttctAACCCTCTCTG
ATCTTTACCCGCAAAACTAACCGAATGAACAATTTATTGTCAGGTCGTCT
TTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATT
ACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATT
CGCAAAAACAAGTAAGAAACGTTCCGCCTACAATTATGTTTAGTCACTGT
CTCAATGTTATCAAGTTTGATTGTAATATCTGTAAGGTTGTGATAGCTTT
GCCAAAACTAGGGAAGAATAATGGATTTAGCTATTTTGCGCCTGACCCGA
GGCGTTCAGAAAGTTTTTCCTCGTTTTACTGCGAAAAACTGCAGCTTCTA
CTCTAggtaaaaaaaagacaaaaagaatcCTGGAATTACTGTAGTATTCT
GCAGTAGTGAATGTTACTTTGAACTTTCCCTCGTTGCTATCAGAAATTAC
TTTCAACTATTGTACTATGATTTTACGACAGCAATTGGGGGTTTGTTTGA
GAGATTTTTTGTTAACGTCTGGTGCATCCATACATTCACTAAATTCGACC
AAATAGCTTAAAGGAATTTGTAGAAGATATcattcatctgtcgtccagtc
ccAAATAAAGAAACTATTTTATGTCTCGCATCTGTCTTTTGCTGTTCTAA
GAAATCCGAAAAACCCAATAACGTATCGTTTTAGTAAAAGTTAAAgatct
tttcttttgttaacaCACCTGTCATTAGTCTCTCCAAAAGTCAAGGAAAT
TGATGATTGAGaacaaaattctaaaataatttttatttatttttcataga
aaatacACTTGTCGTCAATCACAACATAATATCGATTTAAATAACAACGA
GGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCGATAAAATTCATC
GAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTGGAAGTTAACATG
AATAAAGATGGTAGGACCTTTTTTAACCTTCTTATTatggttttctttat
tttgttattgttccGCTCAATAATATCTTTCCACTTTCATTTACTGAAAA
ATCgaaactaaaatttgaaataatatgGCTATGACATTTAGTGACTTTTG
AAGAAACGTCATCTATTTCGTTATTTCGAACTCTTATTTTGTATTGTCGA
TTTATTGTTGTTCTCAGCTGTCCAGCACGAGCGAGGTCCAAGAAACTCCA
CCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATCTTCAC
CAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCTGTCGT
GTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttgaagatt
ttatggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAGATTAC
GAAGAGGTTTGTCATTCCGTTCTTTGTTCGAATCTTCGTTTAAATCCTTC
GTTTTCGGACTGTTCCATTCTCACCCAAAATTTAGCCCTAAATCTTAAGA
TTGGAGCCTACTATTTACTCATGTTAAAcaagttttcattatttttcttg
CACAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTATTATTC
AAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCTTTACTA
CGTTGACCAGGTGAGAATCTCAAATTCAATTTGGTCTTCGGTCTCTTTTT
AACAggagaattcatgatatgcaccattgcaatgtcttccacggacccaa
cagctgattggttcaacgtgattttacgtcacttaccaccaatcagctat
tgggtccgtgatgtaatgtcagaagatattgcaatggtgcaaTAATGAAT
ATACTTCAGTCGAACTCCCATAGCTTGATTCTCCATTATTCTTGGATCTG
TGTGTTCGGTGTATTTCTAAGACTTTAAACATTGATTTTTAATAGATTAT
ACTGATGCAAGAATCTTGGAGCTCGTTATTCCTCATTGCGGCCGTTCAAT
GGAGAATAGTATCAGATGACTGGCTTCTAGACTACTTGCGAGATTACGAA
GATCGTTTCAGTGAACGCGAAGTGCGCATGCTCAGATATATTGCTGATCT
ATTGGCTGATTTGGACCAATTAGACTTGGATGAACGTGAAATGGCTTGTT
TGTTATTCATAGGTTTATTTAATCCATGTAAGTAATTTTGTTAGATCCCT
NTTTGGATGAGCGTGAAATGGCTTGTTTGTTATTCATAGGACTATTTAAT
CCATGTAAGTAATTTTGTTAGATCCCTTTCCGTATTTGCGCATTTAGATG
GGTGCAATTATGCCAACCAATGCATTTTCATTCTCCCCATTATCAGTAAC
TTCAGCATGATAGACCCATTTTGAGAAATTATCAACCACGATTCCCGAAT
GAACCGCCTATGGGTGCTATCAATAATGGTGCATGGGTCGCAGCGCCCCT
AGGTCCTTACCAGCGGTATCCAGTTAGAAATTAGTGTGATGGAACGGCAA
ACATTCCTCTGGAATGTCTGACAACATTCATCATATCTTTGTATGTAAAA
GATTacccaattttccaattttcgaaaatcgaataattattttctttttt
ctgcaTTTTAGACATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCAT
GGCGTGATCAATGTCAAATGGCTTTGAATGATTATTTAACACGTGATCCA
ACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTT
ACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAA
TTGGTGATATGCATATGGAGACTTTGGTTCGGAATATCTTTCATAGAACC
TGATTGGCTGCGGTCGCCGCGATGATTCAAAATTAGATTCTAAAAAGGAT
GAATGCatgtaataaaacaaaaatgaaaactttcaaataaatCTGGTATC
GAGGCTAACCTCTAGATTATTTAACCGTATTCTGAGGACAAAAAAGACAA
CCATGTATCAAGAGCTCTGTGATGACTACATAATTTTTATACGCAGAAAT
TACTTTATTAATTAAAactatatataatttttattgatttttaaaataaa
taaatcttttAATCGGGGAAGGACATAAAATTTAATTGATCATCTTTTGT
TCAAACCTAGTTCTAATTTTAGATAAAAGAAGGGTGTATTCCTATGGTCA
AATTTGGTGTGCAACTCTTTTAATTGTCATCCATGTCAAAGAGAATAACA
AAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002743XLOC_002743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004835-exon-sc0000049-1491911889:24391..26151TCONS_00004835-exon-sc0000049-1491911889:24391..26151Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1510915933:24391..26151TCONS_00004835-exon-sc0000049-1510915933:24391..26151Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1575043694:24391..26151TCONS_00004835-exon-sc0000049-1575043694:24391..26151Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1491911889:26790..26950TCONS_00004835-exon-sc0000049-1491911889:26790..26950Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1510915933:26790..26950TCONS_00004835-exon-sc0000049-1510915933:26790..26950Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1575043694:26790..26950TCONS_00004835-exon-sc0000049-1575043694:26790..26950Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1491911889:27158..27396TCONS_00004835-exon-sc0000049-1491911889:27158..27396Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1510915933:27158..27396TCONS_00004835-exon-sc0000049-1510915933:27158..27396Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1575043694:27158..27396TCONS_00004835-exon-sc0000049-1575043694:27158..27396Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1491911889:27546..27650TCONS_00004835-exon-sc0000049-1491911889:27546..27650Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1510915933:27546..27650TCONS_00004835-exon-sc0000049-1510915933:27546..27650Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1575043694:27546..27650TCONS_00004835-exon-sc0000049-1575043694:27546..27650Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1491911889:27936..28244TCONS_00004835-exon-sc0000049-1491911889:27936..28244Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1510915933:27936..28244TCONS_00004835-exon-sc0000049-1510915933:27936..28244Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1575043694:27936..28244TCONS_00004835-exon-sc0000049-1575043694:27936..28244Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1491911889:28602..29246TCONS_00004835-exon-sc0000049-1491911889:28602..29246Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1510915933:28602..29246TCONS_00004835-exon-sc0000049-1510915933:28602..29246Clytia hemisphaericaexon
TCONS_00004835-exon-sc0000049-1575043694:28602..29246TCONS_00004835-exon-sc0000049-1575043694:28602..29246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:24391..29246 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.838869	0.293502	0.326302	0.827439	1.49419	1.27106	1.58234	1.84681	1.16842	1.67848	1.84112	1.8277	2.13585	4.01437	4.42298	3.07814	3.30912	4.17092	6.01615	3.79311	3.2005	1.58336	2.46837	0.67048	0.982259	0	0.674252	1.05931	0
Blast
[Close]
BLAST of TCONS_00004835 vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.750e-56
Identity = 113/259 (43.63%), Postives = 144/259 (55.60%), Query Frame = 2 
Query: 1640 SGRLLDTPCVVCGDNSSGKHYGVYACDGCSGFFKRSIRKNKKYTCRQSQHNIDLNNNEGGNKPVFRSCPIDKIHRNQCRFCRLQKCLEVNMNKDAVQHERGPRNSTLRKQ------RQDKXXXXXXXXXXXXXXRPIRYE----------EIAVVSSPPLRK--------SPKNDSFEDFMDMVLY--ATEKCLTPDYEENRHLSMTEVTAKLLFKIIQWTKKLPPFASLYYVDQIILMQESWSSLFLIAAVQWRIVSD 2338
            + R+LD PC VCGD SSGKHYGVYACDGCSGFFKRSIR+N+ Y C+        + N+GG       CP+DK HRNQCR CRL+KCLEVNMNKDAVQHERGPR ST+RKQ         +             P P  +           E+A VS+ P R+        +PK     +   M LY  ATE             S+ E  A+LLF  I+W K +P F++L   DQ++L++++W  LF++   QW I  D
Sbjct:    8 TSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCK--------SGNQGG-------CPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATE-------------SVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVD 238
The following BLAST results are available for this feature:
BLAST of TCONS_00004835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2E16.750e-5643.63Nuclear receptor subfamily 2 group E member 1 OS=H... [more]
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