XLOC_002681 (gene) - C. hemisphaerica

Overview
NameXLOC_002681
Unique NameXLOC_002681
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000048:59169..63398+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002681 ID=XLOC_002681|Name=XLOC_002681|organism=Clytia hemisphaerica|type=gene|length=4230bp|location=Sequence derived from alignment at sc0000048:59169..63398+ (Clytia hemisphaerica)
atttttttcaatgttttaaaaatatttaaaagagaataaaaataattcaa
ccAATATTCGTAATTTCCGTATTGATTCGTTGAGATACTGATTTGACAaa
agacaaaattctttctctGTCTTTTTCAAATAATCTATGGCCACACTTCT
GCATGAATTTATCTGGATGCCAACGTATCCTCTgaactttcaaatatttc
attttatctTCAGTGAAACCATGGCAAAATAATTTCATCATACCATTTAN
taaatatttcattttatctTCGTCAGTGAAACCATGGCAAAATAATTTCA
TCATACCATTTAAGCACTGTTCTTCGTTCAATTCGCCTAAATCAAATCCA
GGGAAGTGTAACCAAGGAATCTGTTCAAATTTCAGCTCGTTCTTATTCTc
gttgtttttgaaaatcgaatcaCAAATCTTTTCATATTCTTCTCTTAAAC
GCAATAACTCAAAATTCGTTCTCAGTTCTTTCAAATTGTTTATGGGACCC
AGTTTCCTTTTCTTcgtactttcgctttcgttttctctCTTTCTCGATTT
AGTTTTCAAAGGAACAGCTTTAGATCGATGTTTCCGATTATGTTCGGATT
GCATTCGGTCACCCCATTCCTCGAACGTCTCGGTCTTCGATTTTCGAAAT
GTATCCTCATGCTCATCTTggaaaaacatttcatttccataacGATTATC
ATTCTCACTCATTTCAAAGAAAAGTCGCTCGTTCCAGTCCTTTTCTTTTa
attcactttcactttcgctttcaggTTCTATAAGATATTGGGATTgcgat
ttttgtaaaagctgcaTTATTTCGTCAAGTAAATCAACAGGTGTTTCACC
ATACTCGTTTCGCTGAGTCAGCAATTTATCCCCCATCTCGGGGAGCACGT
CAAATATGATATAGTACAAGAAGGGTCGATCAAAACTTTCGATGACGTAA
TTGAACGCGTAATGAAGAAATAAATTATCTTTCTTATCTAGAAAAGTCAA
ATCAGCGTGATGAGAAATTAAGAATTTAACAATGGCAAGTTCACCCGTGG
ATGAATATTTATGTAAGTAAGTCCAGCCACGGTCACCGAATGTTTCGTTA
ATTTCATCAATAAAGTAATCTATGGAACCACGACCAACGAACTTTTGGTA
ATACTTTTCCATTTTTAGCAATCGTCCATCTTGCAGGTACCGATCaaact
ttttgaatattttctcttCTTCTGTTTGACggtgttttctctttcgtttc
tttttcgatttggatttttttcgaGAAGAAGGATCATTCTTTCGTTTGGT
AGACCTTCTTTCGTCCTCACTTTCTGCCATTAAGTATGTTTATTTACTAC
TCCTAAAACGAAACAGAATGTAGAATAATAAAAAGTCATACAACATCAGC
CCGAAAACCTCTCTACAGACATACAAACATaacaaaaagaagaagtttAT
TCAAACCTCTACGATTTTGTNAACATAACAAAAAGAGGAAGTTTATTCAA
ACCTCTACGATTTTGTAACGACTCTTTCAGTGAAGGTAGAACTAGCACCT
AATTGTTGAAAATATGATTAATTTTTCTTATGAACAGAGAAAGATTTATC
TGGCATACAATTATGATGCAAACATTAAGTTTAAAGCCCAGAGGGCTAAA
AGTGAATCTATTGGACAGGAGATGAATCCACTTTCCTATCCAAAACGCAA
AACCCGCGTGGTTGGTTGGTTTCTGTACAAATCTTAAATCGTTACTGTGC
ACTGTGTACtgtgaaaacatcaaaatacacgtttttttataagaacaaac
tatataagagcataaggcttatggcatggaccaggggtttaagttccccc
taagaaaataggtaccccctgtgattggtaccccctgtgattggtaccTC
CTGTGACTTGAGTAAATCTTCTTAAAtcttatatttttataatagacgat
atcggctttccgaattctccccgaatgattacccatgatgcattgcgcaa
aaaaattcacggacgatattgactttccgtGAATTNNNNNNNattgcgca
aaaaaattcacgaacgatattgactttccgtgaatttttttgcgcaatgc
atcatgggtaatcatttggggagaattcggaaagccgatatcgtctatta
aaaagaacaatgatgatagttagataaaagcaagatatAAAATATAGTTC
CCCAGCCCCCATACCTTACTGTATAAAAGTTAGGTACCCCAAGAgatcat
aggtaccccctgaaattaaaaaaaaccagcccccagcctttttcaggaag
attttggttgAACCCCTCCTGCGGGCTGGGGAGGGGTTCATACCATGacg
cttcgatggccaaaatgttaagaacaagttaagaatattttaaggctttg
gagaccctataacatccaatttcttaggaaaatggacacaaatactcaaa
aaatggtgaaattaagaacatgttaagaacatctgaaagcTCAaacattt
tgaatgttcttataaaaaaacgtttaccttaacagaaataaatcaaatta
cCAAGTGGGTACTCCAGTAAATTAAAACATTCCTATCAAGGAATGAATTT
GCGTTggaataatttttggaaaaatctatacaaaaatacagaaaaactaT
TTGAAAGCAAGCGCTAAAGTACTGTAAACAAAATTCCATATTAGGTATCA
TAAATTAAATACAAGATTAAAATTTATCTACAAGCATAATTTGCCGTACA
AAAATACTGCATGCTGatttaaattgaattttgaaatatcaagCATATCA
tctaaaaaaatactttcataGGATATTTTTTCGCGGTTAAGCTCATTCgc
taaattttaagatttcgcggggacttaattttgcggatggcACTATAaag
agacaatattttcactaCGTTTATCGAAATTAGGACCGTAAAATTTAATA
ACCGCAAAAATTTATCTCATGTAAGTATTTTGACGTTTGATTATAACGGT
ACTGTAGTTAAGGGAAAATCAGTCAGTCAAACTTCCGACTTTTGTCTTCA
AAAACACTGCCCAATTCGGtgtttcaaagagaaaataatttCATCCAATC
AGAGACGACTATTCAAACCATTCCACCAATCAAAAGCGAATCTCATATAA
ATTCCTCATCATTTCCGACGTCCACAAACAAATCAAATGATTCTCGATTA
CAATTCCCGTCTTTGGTGAAAACATATTTATTGAAACTTCCATCGTATGA
GATGGCAATGACACTCGACCCAGGCCCAAAAACACACAAACACGGACACT
CAGCTTGAACTGAAAAATTAGCCAATCCCCATTGCGATTCTGCATATTGT
CCGAAAAAGCCAACTTTAGATAAAGTTGAACGCTTATTTTTCGCAGGTTC
CTTCACAGCGAATATATGGACAGTTCCTTTATCACTTGCCGCGCAAAGAT
ACGAAGAATCCGGACTAAAATTCAAACAGTAAAGAGATGCAGGGTCTGTT
CCCCGACGTAGCTCGATTAACTGGCGACGTGTCTTGATTTCGAACACCCG
TATAAGAGTTCCCTTCTTCGAAGCTGTTGCTACGTAAGTTCCCAACTGAT
TCATTGCGATGCAAGCTATATCATGTTGGTGCGCGTTGATGAGACAAGGC
GTCGACGATAATCCAATCTTTGAAACGTCTAAATCAACCAATTGAATGCT
ACCTGATTTCGGTCCTGGAAATACACACATTTGGCTGTCAATAGCAACGG
AGAGTTCACACAGACCACGTGGGTTATCACGCGTGTCGTAACAAAACAAT
TGCGTAGAATCATTGGGGAAGCTGTACGCATATAGCTTTTTCTGTAAAAC
AACCAGAATCATGTTTTTACGCAAACGTACATTTAGAACGGGTGAACAGA
ACGTGTATTCAAAAACAGGCTTTTTAAGGTTTCCATCCCAGATAACAACA
CGGTTCTTGGCGTATTTCATGTGGCGGCCGCTTCCAACCAGCGCGAACAA
ATTGGAGCGGTTCAACATATGAACTTGACCAATACCGCCGCAGTCAGGGA
CATCTTGGCGTAACACATTAGCCAGTGGCTCCACATTATACACTGTGAAT
CCGCTTTCGGTTCCACAAACAAAACATGAGCGGTTGTAATTGACGCTCAA
AAAGCGCACGTCTTTATTCTGAGCCATTGTTCTTCGAGTGTTTtagttca
ttttttttattcctgaaaaaaagaaaaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004733TCONS_00004733Clytia hemisphaericatranscript
TCONS_00004734TCONS_00004734Clytia hemisphaericatranscript
TCONS_00004735TCONS_00004735Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:59169..63398 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.19	35.83	17.08	15.11	16.09	12.57	12.65	14.6	11.9	14.06	13.51	8.77	8.73	7.66	8.17	10.25	10.55	11.63	6	8.05	8.29	9.03	41.6	33.47	19.17	16.78	5.81	7.08	23.36	26.25