TCONS_00004735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004735
Unique NameTCONS_00004735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004735 ID=TCONS_00004735|Name=TCONS_00004735|organism=Clytia hemisphaerica|type=transcript|length=1655bp
AACATTCCTATCAAGGAATGAATTTGCGTTggaataatttttggaaaaat
ctatacaaaaatacagaaaaactaTTTGAAAGCAAGCGCTAAAGTACTGT
AAACAAAATTCCATATTAGGTATCATAAATTAAATACAAGATTAAAATTT
ATCTACAAGCATAATTTGCCGTACAAAAATACTGCATGCTGatttaaatt
gaattttgaaatatcaagCATATCAtctaaaaaaatactttcataGGATA
TTTTTTCGCGGTTAAGCTCATTCgctaaattttaagatttcgcggggact
taattttgcggatggcACTATAaagagacaatattttcactaCGTTTATC
GAAATTAGGACCGTAAAATTTAATAACCGCAAAAATTTATCTCATGTAAG
TATTTTGACGTTTGATTATAACGGTACTGTAGTTAAGGGAAAATCAGTCA
GTCAAACTTCCGACTTTTGTCTTCAAAAACACTGCCCAATTCGGtgtttc
aaagagaaaataatttCATCCAATCAGAGACGACTATTCAAACCATTCCA
CCAATCAAAAGCGAATCTCATATAAATTCCTCATCATTTCCGACGTCCAC
AAACAAATCAAATGATTCTCGATTACAATTCCCGTCTTTGGTGAAAACAT
ATTTATTGAAACTTCCATCGTATGAGATGGCAATGACACTCGACCCAGGC
CCAAAAACACACAAACACGGACACTCAGCTTGAACTGAAAAATTAGCCAA
TCCCCATTGCGATTCTGCATATTGTCCGAAAAAGCCAACTTTAGATAAAG
TTGAACGCTTATTTTTCGCAGGTTCCTTCACAGCGAATATATGGACAGTT
CCTTTATCACTTGCCGCGCAAAGATACGAAGAATCCGGACTAAAATTCAA
ACAGTAAAGAGATGCAGGGTCTGTTCCCCGACGTAGCTCGATTAACTGGC
GACGTGTCTTGATTTCGAACACCCGTATAAGAGTTCCCTTCTTCGAAGCT
GTTGCTACGTAAGTTCCCAACTGATTCATTGCGATGCAAGCTATATCATG
TTGGTGCGCGTTGATGAGACAAGGCGTCGACGATAATCCAATCTTTGAAA
CGTCTAAATCAACCAATTGAATGCTACCTGATTTCGGTCCTGGAAATACA
CACATTTGGCTGTCAATAGCAACGGAGAGTTCACACAGACCACGTGGGTT
ATCACGCGTGTCGTAACAAAACAATTGCGTAGAATCATTGGGGAAGCTGT
ACGCATATAGCTTTTTCTGTAAAACAACCAGAATCATGTTTTTACGCAAA
CGTACATTTAGAACGGGTGAACAGAACGTGTATTCAAAAACAGGCTTTTT
AAGGTTTCCATCCCAGATAACAACACGGTTCTTGGCGTATTTCATGTGGC
GGCCGCTTCCAACCAGCGCGAACAAATTGGAGCGGTTCAACATATGAACT
TGACCAATACCGCCGCAGTCAGGGACATCTTGGCGTAACACATTAGCCAG
TGGCTCCACATTATACACTGTGAATCCGCTTTCGGTTCCACAAACAAAAC
ATGAGCGGTTGTAATTGACGCTCAAAAAGCGCACGTCTTTATTCTGAGCC
ATTGTTCTTCGAGTGTTTtagttcattttttttattcctgaaaaaaagaa
aaaaa
Run BLAST on NCBI

transcript from alignment at sc0000048:61744..63398+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004735 ID=TCONS_00004735|Name=TCONS_00004735|organism=Clytia hemisphaerica|type=transcript|length=1655bp|location=Sequence derived from alignment at sc0000048:61744..63398+ (Clytia hemisphaerica)
AACATTCCTATCAAGGAATGAATTTGCGTTggaataatttttggaaaaat
ctatacaaaaatacagaaaaactaTTTGAAAGCAAGCGCTAAAGTACTGT
AAACAAAATTCCATATTAGGTATCATAAATTAAATACAAGATTAAAATTT
ATCTACAAGCATAATTTGCCGTACAAAAATACTGCATGCTGatttaaatt
gaattttgaaatatcaagCATATCAtctaaaaaaatactttcataGGATA
TTTTTTCGCGGTTAAGCTCATTCgctaaattttaagatttcgcggggact
taattttgcggatggcACTATAaagagacaatattttcactaCGTTTATC
GAAATTAGGACCGTAAAATTTAATAACCGCAAAAATTTATCTCATGTAAG
TATTTTGACGTTTGATTATAACGGTACTGTAGTTAAGGGAAAATCAGTCA
GTCAAACTTCCGACTTTTGTCTTCAAAAACACTGCCCAATTCGGtgtttc
aaagagaaaataatttCATCCAATCAGAGACGACTATTCAAACCATTCCA
CCAATCAAAAGCGAATCTCATATAAATTCCTCATCATTTCCGACGTCCAC
AAACAAATCAAATGATTCTCGATTACAATTCCCGTCTTTGGTGAAAACAT
ATTTATTGAAACTTCCATCGTATGAGATGGCAATGACACTCGACCCAGGC
CCAAAAACACACAAACACGGACACTCAGCTTGAACTGAAAAATTAGCCAA
TCCCCATTGCGATTCTGCATATTGTCCGAAAAAGCCAACTTTAGATAAAG
TTGAACGCTTATTTTTCGCAGGTTCCTTCACAGCGAATATATGGACAGTT
CCTTTATCACTTGCCGCGCAAAGATACGAAGAATCCGGACTAAAATTCAA
ACAGTAAAGAGATGCAGGGTCTGTTCCCCGACGTAGCTCGATTAACTGGC
GACGTGTCTTGATTTCGAACACCCGTATAAGAGTTCCCTTCTTCGAAGCT
GTTGCTACGTAAGTTCCCAACTGATTCATTGCGATGCAAGCTATATCATG
TTGGTGCGCGTTGATGAGACAAGGCGTCGACGATAATCCAATCTTTGAAA
CGTCTAAATCAACCAATTGAATGCTACCTGATTTCGGTCCTGGAAATACA
CACATTTGGCTGTCAATAGCAACGGAGAGTTCACACAGACCACGTGGGTT
ATCACGCGTGTCGTAACAAAACAATTGCGTAGAATCATTGGGGAAGCTGT
ACGCATATAGCTTTTTCTGTAAAACAACCAGAATCATGTTTTTACGCAAA
CGTACATTTAGAACGGGTGAACAGAACGTGTATTCAAAAACAGGCTTTTT
AAGGTTTCCATCCCAGATAACAACACGGTTCTTGGCGTATTTCATGTGGC
GGCCGCTTCCAACCAGCGCGAACAAATTGGAGCGGTTCAACATATGAACT
TGACCAATACCGCCGCAGTCAGGGACATCTTGGCGTAACACATTAGCCAG
TGGCTCCACATTATACACTGTGAATCCGCTTTCGGTTCCACAAACAAAAC
ATGAGCGGTTGTAATTGACGCTCAAAAAGCGCACGTCTTTATTCTGAGCC
ATTGTTCTTCGAGTGTTTtagttcattttttttattcctgaaaaaaagaa
aaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002681XLOC_002681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004735-exon-sc0000048-1491911889:61744..63398TCONS_00004735-exon-sc0000048-1491911889:61744..63398Clytia hemisphaericaexon
TCONS_00004735-exon-sc0000048-1510915933:61744..63398TCONS_00004735-exon-sc0000048-1510915933:61744..63398Clytia hemisphaericaexon
TCONS_00004735-exon-sc0000048-1575043694:61744..63398TCONS_00004735-exon-sc0000048-1575043694:61744..63398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:61744..63398 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.568	29.6359	14.8373	12.9398	13.0726	10.5644	10.3548	11.8952	9.79192	11.7301	10.5784	6.54538	7.78014	5.88853	5.88784	7.77433	8.27147	9.60787	5.8683	7.64394	7.36865	7.89492	28.5487	22.9808	16.9159	13.5249	5.02279	5.45736	15.2144	17.7894
Blast
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BLAST of TCONS_00004735 vs. Swiss-Prot (Human)
Match: WIPI4 (WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 4.098e-130
Identity = 188/354 (53.11%), Postives = 258/354 (72.88%), Query Frame = -3 
Query:  574 KDVRFLSVNYNRSCFVCGTESGFTVYNVEPLANVLRQDVPDCGGIGQVHMLNRSNLFALVGSGRHMKYAKNRVVIWDG------NLKKPVFEYTFCSPVLNVRLRKNMILVVLQKKLYAYSFPNDSTQLFCYDTRDNPRGLCELSVAIDSQMCVFPGPKSGSIQLVDLDVSKIGLSSTPCLINAHQHDIACIAMNQLGTYVATASKKGTLIRVFEIKTRRQLIELRRGTDPASLYCLNFSPDSSYLCAASDKGTVHIFAVKEPAKNKRSTLSKVG----FFGQYAESQWGLANFSVQAECPCLCVFGPGS-----SVIAISYDGSFNKYVFTKDGNCNRESFDLFVDVGNDEEF 1590
            + V  L  N ++SCF C  E+G  +YNVEPL      D    G +G V ML+RSNL ALVG G   K+++  V+IWD       + +K V E+TF  PVL+VR+R + I++VL+ ++Y YSFP++  +LF +DTRDNP+GLC+L  +++ Q+ VFPG K GS+QLVDL  +K G SS P  INAHQ DIAC+++NQ GT VA+AS+KGTLIR+F+ +++ +L+ELRRGTDPA+LYC+NFS DSS+LCA+SDKGTVHIFA+K+   N+RS L++VG      GQY +SQW LA+F+V AE  C+C FG  +     SVIAI  DG+F+KYVFT DGNCNRE+FD+++D+ +D++F
Sbjct:    7 RGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDICDDDDF 360
The following BLAST results are available for this feature:
BLAST of TCONS_00004735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WIPI44.098e-13053.11WD repeat domain phosphoinositide-interacting prot... [more]
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