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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004734 ID=TCONS_00004734|Name=TCONS_00004734|organism=Clytia hemisphaerica|type=transcript|length=1406bp TTCTCAGTTCTTTCAAATTGTTTATGGGACCCAGTTTCCTTTTCTTcgta ctttcgctttcgttttctctCTTTCTCGATTTAGTTTTCAAAGGAACAGC TTTAGATCGATGTTTCCGATTATGTTCGGATTGCATTCGGTCACCCCATT CCTCGAACGTCTCGGTCTTCGATTTTCGAAATGTATCCTCATGCTCATCT TggaaaaacatttcatttccataacGATTATCATTCTCACTCATTTCAAA GAAAAGTCGCTCGTTCCAGTCCTTTTCTTTTaattcactttcactttcgc tttcaggTTCTATAAGATATTGGGATTgcgatttttgtaaaagctgcaTT ATTTCGTCAAGTAAATCAACAGGTGTTTCACCATACTCGTTTCGCTGAGT CAGCAATTTATCCCCCATCTCGGGGAGCACGTCAAATATGATATAGTACA AGAAGGGTCGATCAAAACTTTCGATGACGTAATTGAACGCGTAATGAAGA AATAAATTATCTTTCTTATCTAGAAAAGTCAAATCAGCGTGATGAGAAAT TAAGAATTTAACAATGGCAAGTTCACCCGTGGATGAATATTTATGTTCCT TCACAGCGAATATATGGACAGTTCCTTTATCACTTGCCGCGCAAAGATAC GAAGAATCCGGACTAAAATTCAAACAGTAAAGAGATGCAGGGTCTGTTCC CCGACGTAGCTCGATTAACTGGCGACGTGTCTTGATTTCGAACACCCGTA TAAGAGTTCCCTTCTTCGAAGCTGTTGCTACGTAAGTTCCCAACTGATTC ATTGCGATGCAAGCTATATCATGTTGGTGCGCGTTGATGAGACAAGGCGT CGACGATAATCCAATCTTTGAAACGTCTAAATCAACCAATTGAATGCTAC CTGATTTCGGTCCTGGAAATACACACATTTGGCTGTCAATAGCAACGGAG AGTTCACACAGACCACGTGGGTTATCACGCGTGTCGTAACAAAACAATTG CGTAGAATCATTGGGGAAGCTGTACGCATATAGCTTTTTCTGTAAAACAA CCAGAATCATGTTTTTACGCAAACGTACATTTAGAACGGGTGAACAGAAC GTGTATTCAAAAACAGGCTTTTTAAGGTTTCCATCCCAGATAACAACACG GTTCTTGGCGTATTTCATGTGGCGGCCGCTTCCAACCAGCGCGAACAAAT TGGAGCGGTTCAACATATGAACTTGACCAATACCGCCGCAGTCAGGGACA TCTTGGCGTAACACATTAGCCAGTGGCTCCACATTATACACTGTGAATCC GCTTTCGGTTCCACAAACAAAACATGAGCGGTTGTAATTGACGCTCAAAA AGCGCACGTCTTTATTCTGAGCCATTGTTCTTCGAGTGTTTtagttcatt tttttt Run BLAST on NCBI transcript from alignment at sc0000048:59637..63376+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004734 ID=TCONS_00004734|Name=TCONS_00004734|organism=Clytia hemisphaerica|type=transcript|length=3740bp|location=Sequence derived from alignment at sc0000048:59637..63376+ (Clytia hemisphaerica) TTCTCAGTTCTTTCAAATTGTTTATGGGACCCAGTTTCCTTTTCTTcgta
ctttcgctttcgttttctctCTTTCTCGATTTAGTTTTCAAAGGAACAGC
TTTAGATCGATGTTTCCGATTATGTTCGGATTGCATTCGGTCACCCCATT
CCTCGAACGTCTCGGTCTTCGATTTTCGAAATGTATCCTCATGCTCATCT
TggaaaaacatttcatttccataacGATTATCATTCTCACTCATTTCAAA
GAAAAGTCGCTCGTTCCAGTCCTTTTCTTTTaattcactttcactttcgc
tttcaggTTCTATAAGATATTGGGATTgcgatttttgtaaaagctgcaTT
ATTTCGTCAAGTAAATCAACAGGTGTTTCACCATACTCGTTTCGCTGAGT
CAGCAATTTATCCCCCATCTCGGGGAGCACGTCAAATATGATATAGTACA
AGAAGGGTCGATCAAAACTTTCGATGACGTAATTGAACGCGTAATGAAGA
AATAAATTATCTTTCTTATCTAGAAAAGTCAAATCAGCGTGATGAGAAAT
TAAGAATTTAACAATGGCAAGTTCACCCGTGGATGAATATTTATGTAAGT
AAGTCCAGCCACGGTCACCGAATGTTTCGTTAATTTCATCAATAAAGTAA
TCTATGGAACCACGACCAACGAACTTTTGGTAATACTTTTCCATTTTTAG
CAATCGTCCATCTTGCAGGTACCGATCaaactttttgaatattttctctt
CTTCTGTTTGACggtgttttctctttcgtttctttttcgatttggatttt
tttcgaGAAGAAGGATCATTCTTTCGTTTGGTAGACCTTCTTTCGTCCTC
ACTTTCTGCCATTAAGTATGTTTATTTACTACTCCTAAAACGAAACAGAA
TGTAGAATAATAAAAAGTCATACAACATCAGCCCGAAAACCTCTCTACAG
ACATACAAACATaacaaaaagaagaagtttATTCAAACCTCTACGATTTT
GTNAACATAACAAAAAGAGGAAGTTTATTCAAACCTCTACGATTTTGTAA
CGACTCTTTCAGTGAAGGTAGAACTAGCACCTAATTGTTGAAAATATGAT
TAATTTTTCTTATGAACAGAGAAAGATTTATCTGGCATACAATTATGATG
CAAACATTAAGTTTAAAGCCCAGAGGGCTAAAAGTGAATCTATTGGACAG
GAGATGAATCCACTTTCCTATCCAAAACGCAAAACCCGCGTGGTTGGTTG
GTTTCTGTACAAATCTTAAATCGTTACTGTGCACTGTGTACtgtgaaaac
atcaaaatacacgtttttttataagaacaaactatataagagcataaggc
ttatggcatggaccaggggtttaagttccccctaagaaaataggtacccc
ctgtgattggtaccccctgtgattggtaccTCCTGTGACTTGAGTAAATC
TTCTTAAAtcttatatttttataatagacgatatcggctttccgaattct
ccccgaatgattacccatgatgcattgcgcaaaaaaattcacggacgata
ttgactttccgtGAATTNNNNNNNattgcgcaaaaaaattcacgaacgat
attgactttccgtgaatttttttgcgcaatgcatcatgggtaatcatttg
gggagaattcggaaagccgatatcgtctattaaaaagaacaatgatgata
gttagataaaagcaagatatAAAATATAGTTCCCCAGCCCCCATACCTTA
CTGTATAAAAGTTAGGTACCCCAAGAgatcataggtaccccctgaaatta
aaaaaaaccagcccccagcctttttcaggaagattttggttgAACCCCTC
CTGCGGGCTGGGGAGGGGTTCATACCATGacgcttcgatggccaaaatgt
taagaacaagttaagaatattttaaggctttggagaccctataacatcca
atttcttaggaaaatggacacaaatactcaaaaaatggtgaaattaagaa
catgttaagaacatctgaaagcTCAaacattttgaatgttcttataaaaa
aacgtttaccttaacagaaataaatcaaattacCAAGTGGGTACTCCAGT
AAATTAAAACATTCCTATCAAGGAATGAATTTGCGTTggaataatttttg
gaaaaatctatacaaaaatacagaaaaactaTTTGAAAGCAAGCGCTAAA
GTACTGTAAACAAAATTCCATATTAGGTATCATAAATTAAATACAAGATT
AAAATTTATCTACAAGCATAATTTGCCGTACAAAAATACTGCATGCTGat
ttaaattgaattttgaaatatcaagCATATCAtctaaaaaaatactttca
taGGATATTTTTTCGCGGTTAAGCTCATTCgctaaattttaagatttcgc
ggggacttaattttgcggatggcACTATAaagagacaatattttcactaC
GTTTATCGAAATTAGGACCGTAAAATTTAATAACCGCAAAAATTTATCTC
ATGTAAGTATTTTGACGTTTGATTATAACGGTACTGTAGTTAAGGGAAAA
TCAGTCAGTCAAACTTCCGACTTTTGTCTTCAAAAACACTGCCCAATTCG
GtgtttcaaagagaaaataatttCATCCAATCAGAGACGACTATTCAAAC
CATTCCACCAATCAAAAGCGAATCTCATATAAATTCCTCATCATTTCCGA
CGTCCACAAACAAATCAAATGATTCTCGATTACAATTCCCGTCTTTGGTG
AAAACATATTTATTGAAACTTCCATCGTATGAGATGGCAATGACACTCGA
CCCAGGCCCAAAAACACACAAACACGGACACTCAGCTTGAACTGAAAAAT
TAGCCAATCCCCATTGCGATTCTGCATATTGTCCGAAAAAGCCAACTTTA
GATAAAGTTGAACGCTTATTTTTCGCAGGTTCCTTCACAGCGAATATATG
GACAGTTCCTTTATCACTTGCCGCGCAAAGATACGAAGAATCCGGACTAA
AATTCAAACAGTAAAGAGATGCAGGGTCTGTTCCCCGACGTAGCTCGATT
AACTGGCGACGTGTCTTGATTTCGAACACCCGTATAAGAGTTCCCTTCTT
CGAAGCTGTTGCTACGTAAGTTCCCAACTGATTCATTGCGATGCAAGCTA
TATCATGTTGGTGCGCGTTGATGAGACAAGGCGTCGACGATAATCCAATC
TTTGAAACGTCTAAATCAACCAATTGAATGCTACCTGATTTCGGTCCTGG
AAATACACACATTTGGCTGTCAATAGCAACGGAGAGTTCACACAGACCAC
GTGGGTTATCACGCGTGTCGTAACAAAACAATTGCGTAGAATCATTGGGG
AAGCTGTACGCATATAGCTTTTTCTGTAAAACAACCAGAATCATGTTTTT
ACGCAAACGTACATTTAGAACGGGTGAACAGAACGTGTATTCAAAAACAG
GCTTTTTAAGGTTTCCATCCCAGATAACAACACGGTTCTTGGCGTATTTC
ATGTGGCGGCCGCTTCCAACCAGCGCGAACAAATTGGAGCGGTTCAACAT
ATGAACTTGACCAATACCGCCGCAGTCAGGGACATCTTGGCGTAACACAT
TAGCCAGTGGCTCCACATTATACACTGTGAATCCGCTTTCGGTTCCACAA
ACAAAACATGAGCGGTTGTAATTGACGCTCAAAAAGCGCACGTCTTTATT
CTGAGCCATTGTTCTTCGAGTGTTTtagttcatttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004734-exon-sc0000048-1491911889:59637..60230 | TCONS_00004734-exon-sc0000048-1491911889:59637..60230 | Clytia hemisphaerica | exon |
TCONS_00004734-exon-sc0000048-1510915933:59637..60230 | TCONS_00004734-exon-sc0000048-1510915933:59637..60230 | Clytia hemisphaerica | exon |
TCONS_00004734-exon-sc0000048-1575043694:59637..60230 | TCONS_00004734-exon-sc0000048-1575043694:59637..60230 | Clytia hemisphaerica | exon |
TCONS_00004734-exon-sc0000048-1491911889:62565..63376 | TCONS_00004734-exon-sc0000048-1491911889:62565..63376 | Clytia hemisphaerica | exon |
TCONS_00004734-exon-sc0000048-1510915933:62565..63376 | TCONS_00004734-exon-sc0000048-1510915933:62565..63376 | Clytia hemisphaerica | exon |
TCONS_00004734-exon-sc0000048-1575043694:62565..63376 | TCONS_00004734-exon-sc0000048-1575043694:62565..63376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000048 | supercontig | sc0000048:59637..63376 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00004734 vs. Swiss-Prot (Human)
Match: WIPI4 (WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=1 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 2.371e-95 Identity = 144/274 (52.55%), Postives = 198/274 (72.26%), Query Frame = -2
Query: 560 KDVRFLSVNYNRSCFVCGTESGFTVYNVEPLANVLRQDVPDCGGIGQVHMLNRSNLFALVGSGRHMKYAKNRVVIWDG------NLKKPVFEYTFCSPVLNVRLRKNMILVVLQKKLYAYSFPNDSTQLFCYDTRDNPRGLCELSVAIDSQMCVFPGPKSGSIQLVDLDVSKIGLSSTPCLINAHQHDIACIAMNQLGTYVATASKKGTLIRVFEIKTRRQLIELRRGTDPASLYCLNFSPDSSYLCAASDKGTVHIFAVKEHKYSSTGELAIV 1363
+ V L N ++SCF C E+G +YNVEPL D G +G V ML+RSNL ALVG G K+++ V+IWD + +K V E+TF PVL+VR+R + I++VL+ ++Y YSFP++ +LF +DTRDNP+GLC+L +++ Q+ VFPG K GS+QLVDL +K G SS P INAHQ DIAC+++NQ GT VA+AS+KGTLIR+F+ +++ +L+ELRRGTDPA+LYC+NFS DSS+LCA+SDKGTVHIFA+K+ + + LA V
Sbjct: 7 RGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARV 280
The following BLAST results are available for this feature:
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