TCONS_00004734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004734
Unique NameTCONS_00004734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004734 ID=TCONS_00004734|Name=TCONS_00004734|organism=Clytia hemisphaerica|type=transcript|length=1406bp
TTCTCAGTTCTTTCAAATTGTTTATGGGACCCAGTTTCCTTTTCTTcgta
ctttcgctttcgttttctctCTTTCTCGATTTAGTTTTCAAAGGAACAGC
TTTAGATCGATGTTTCCGATTATGTTCGGATTGCATTCGGTCACCCCATT
CCTCGAACGTCTCGGTCTTCGATTTTCGAAATGTATCCTCATGCTCATCT
TggaaaaacatttcatttccataacGATTATCATTCTCACTCATTTCAAA
GAAAAGTCGCTCGTTCCAGTCCTTTTCTTTTaattcactttcactttcgc
tttcaggTTCTATAAGATATTGGGATTgcgatttttgtaaaagctgcaTT
ATTTCGTCAAGTAAATCAACAGGTGTTTCACCATACTCGTTTCGCTGAGT
CAGCAATTTATCCCCCATCTCGGGGAGCACGTCAAATATGATATAGTACA
AGAAGGGTCGATCAAAACTTTCGATGACGTAATTGAACGCGTAATGAAGA
AATAAATTATCTTTCTTATCTAGAAAAGTCAAATCAGCGTGATGAGAAAT
TAAGAATTTAACAATGGCAAGTTCACCCGTGGATGAATATTTATGTTCCT
TCACAGCGAATATATGGACAGTTCCTTTATCACTTGCCGCGCAAAGATAC
GAAGAATCCGGACTAAAATTCAAACAGTAAAGAGATGCAGGGTCTGTTCC
CCGACGTAGCTCGATTAACTGGCGACGTGTCTTGATTTCGAACACCCGTA
TAAGAGTTCCCTTCTTCGAAGCTGTTGCTACGTAAGTTCCCAACTGATTC
ATTGCGATGCAAGCTATATCATGTTGGTGCGCGTTGATGAGACAAGGCGT
CGACGATAATCCAATCTTTGAAACGTCTAAATCAACCAATTGAATGCTAC
CTGATTTCGGTCCTGGAAATACACACATTTGGCTGTCAATAGCAACGGAG
AGTTCACACAGACCACGTGGGTTATCACGCGTGTCGTAACAAAACAATTG
CGTAGAATCATTGGGGAAGCTGTACGCATATAGCTTTTTCTGTAAAACAA
CCAGAATCATGTTTTTACGCAAACGTACATTTAGAACGGGTGAACAGAAC
GTGTATTCAAAAACAGGCTTTTTAAGGTTTCCATCCCAGATAACAACACG
GTTCTTGGCGTATTTCATGTGGCGGCCGCTTCCAACCAGCGCGAACAAAT
TGGAGCGGTTCAACATATGAACTTGACCAATACCGCCGCAGTCAGGGACA
TCTTGGCGTAACACATTAGCCAGTGGCTCCACATTATACACTGTGAATCC
GCTTTCGGTTCCACAAACAAAACATGAGCGGTTGTAATTGACGCTCAAAA
AGCGCACGTCTTTATTCTGAGCCATTGTTCTTCGAGTGTTTtagttcatt
tttttt
Run BLAST on NCBI

transcript from alignment at sc0000048:59637..63376+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004734 ID=TCONS_00004734|Name=TCONS_00004734|organism=Clytia hemisphaerica|type=transcript|length=3740bp|location=Sequence derived from alignment at sc0000048:59637..63376+ (Clytia hemisphaerica)
TTCTCAGTTCTTTCAAATTGTTTATGGGACCCAGTTTCCTTTTCTTcgta
ctttcgctttcgttttctctCTTTCTCGATTTAGTTTTCAAAGGAACAGC
TTTAGATCGATGTTTCCGATTATGTTCGGATTGCATTCGGTCACCCCATT
CCTCGAACGTCTCGGTCTTCGATTTTCGAAATGTATCCTCATGCTCATCT
TggaaaaacatttcatttccataacGATTATCATTCTCACTCATTTCAAA
GAAAAGTCGCTCGTTCCAGTCCTTTTCTTTTaattcactttcactttcgc
tttcaggTTCTATAAGATATTGGGATTgcgatttttgtaaaagctgcaTT
ATTTCGTCAAGTAAATCAACAGGTGTTTCACCATACTCGTTTCGCTGAGT
CAGCAATTTATCCCCCATCTCGGGGAGCACGTCAAATATGATATAGTACA
AGAAGGGTCGATCAAAACTTTCGATGACGTAATTGAACGCGTAATGAAGA
AATAAATTATCTTTCTTATCTAGAAAAGTCAAATCAGCGTGATGAGAAAT
TAAGAATTTAACAATGGCAAGTTCACCCGTGGATGAATATTTATGTAAGT
AAGTCCAGCCACGGTCACCGAATGTTTCGTTAATTTCATCAATAAAGTAA
TCTATGGAACCACGACCAACGAACTTTTGGTAATACTTTTCCATTTTTAG
CAATCGTCCATCTTGCAGGTACCGATCaaactttttgaatattttctctt
CTTCTGTTTGACggtgttttctctttcgtttctttttcgatttggatttt
tttcgaGAAGAAGGATCATTCTTTCGTTTGGTAGACCTTCTTTCGTCCTC
ACTTTCTGCCATTAAGTATGTTTATTTACTACTCCTAAAACGAAACAGAA
TGTAGAATAATAAAAAGTCATACAACATCAGCCCGAAAACCTCTCTACAG
ACATACAAACATaacaaaaagaagaagtttATTCAAACCTCTACGATTTT
GTNAACATAACAAAAAGAGGAAGTTTATTCAAACCTCTACGATTTTGTAA
CGACTCTTTCAGTGAAGGTAGAACTAGCACCTAATTGTTGAAAATATGAT
TAATTTTTCTTATGAACAGAGAAAGATTTATCTGGCATACAATTATGATG
CAAACATTAAGTTTAAAGCCCAGAGGGCTAAAAGTGAATCTATTGGACAG
GAGATGAATCCACTTTCCTATCCAAAACGCAAAACCCGCGTGGTTGGTTG
GTTTCTGTACAAATCTTAAATCGTTACTGTGCACTGTGTACtgtgaaaac
atcaaaatacacgtttttttataagaacaaactatataagagcataaggc
ttatggcatggaccaggggtttaagttccccctaagaaaataggtacccc
ctgtgattggtaccccctgtgattggtaccTCCTGTGACTTGAGTAAATC
TTCTTAAAtcttatatttttataatagacgatatcggctttccgaattct
ccccgaatgattacccatgatgcattgcgcaaaaaaattcacggacgata
ttgactttccgtGAATTNNNNNNNattgcgcaaaaaaattcacgaacgat
attgactttccgtgaatttttttgcgcaatgcatcatgggtaatcatttg
gggagaattcggaaagccgatatcgtctattaaaaagaacaatgatgata
gttagataaaagcaagatatAAAATATAGTTCCCCAGCCCCCATACCTTA
CTGTATAAAAGTTAGGTACCCCAAGAgatcataggtaccccctgaaatta
aaaaaaaccagcccccagcctttttcaggaagattttggttgAACCCCTC
CTGCGGGCTGGGGAGGGGTTCATACCATGacgcttcgatggccaaaatgt
taagaacaagttaagaatattttaaggctttggagaccctataacatcca
atttcttaggaaaatggacacaaatactcaaaaaatggtgaaattaagaa
catgttaagaacatctgaaagcTCAaacattttgaatgttcttataaaaa
aacgtttaccttaacagaaataaatcaaattacCAAGTGGGTACTCCAGT
AAATTAAAACATTCCTATCAAGGAATGAATTTGCGTTggaataatttttg
gaaaaatctatacaaaaatacagaaaaactaTTTGAAAGCAAGCGCTAAA
GTACTGTAAACAAAATTCCATATTAGGTATCATAAATTAAATACAAGATT
AAAATTTATCTACAAGCATAATTTGCCGTACAAAAATACTGCATGCTGat
ttaaattgaattttgaaatatcaagCATATCAtctaaaaaaatactttca
taGGATATTTTTTCGCGGTTAAGCTCATTCgctaaattttaagatttcgc
ggggacttaattttgcggatggcACTATAaagagacaatattttcactaC
GTTTATCGAAATTAGGACCGTAAAATTTAATAACCGCAAAAATTTATCTC
ATGTAAGTATTTTGACGTTTGATTATAACGGTACTGTAGTTAAGGGAAAA
TCAGTCAGTCAAACTTCCGACTTTTGTCTTCAAAAACACTGCCCAATTCG
GtgtttcaaagagaaaataatttCATCCAATCAGAGACGACTATTCAAAC
CATTCCACCAATCAAAAGCGAATCTCATATAAATTCCTCATCATTTCCGA
CGTCCACAAACAAATCAAATGATTCTCGATTACAATTCCCGTCTTTGGTG
AAAACATATTTATTGAAACTTCCATCGTATGAGATGGCAATGACACTCGA
CCCAGGCCCAAAAACACACAAACACGGACACTCAGCTTGAACTGAAAAAT
TAGCCAATCCCCATTGCGATTCTGCATATTGTCCGAAAAAGCCAACTTTA
GATAAAGTTGAACGCTTATTTTTCGCAGGTTCCTTCACAGCGAATATATG
GACAGTTCCTTTATCACTTGCCGCGCAAAGATACGAAGAATCCGGACTAA
AATTCAAACAGTAAAGAGATGCAGGGTCTGTTCCCCGACGTAGCTCGATT
AACTGGCGACGTGTCTTGATTTCGAACACCCGTATAAGAGTTCCCTTCTT
CGAAGCTGTTGCTACGTAAGTTCCCAACTGATTCATTGCGATGCAAGCTA
TATCATGTTGGTGCGCGTTGATGAGACAAGGCGTCGACGATAATCCAATC
TTTGAAACGTCTAAATCAACCAATTGAATGCTACCTGATTTCGGTCCTGG
AAATACACACATTTGGCTGTCAATAGCAACGGAGAGTTCACACAGACCAC
GTGGGTTATCACGCGTGTCGTAACAAAACAATTGCGTAGAATCATTGGGG
AAGCTGTACGCATATAGCTTTTTCTGTAAAACAACCAGAATCATGTTTTT
ACGCAAACGTACATTTAGAACGGGTGAACAGAACGTGTATTCAAAAACAG
GCTTTTTAAGGTTTCCATCCCAGATAACAACACGGTTCTTGGCGTATTTC
ATGTGGCGGCCGCTTCCAACCAGCGCGAACAAATTGGAGCGGTTCAACAT
ATGAACTTGACCAATACCGCCGCAGTCAGGGACATCTTGGCGTAACACAT
TAGCCAGTGGCTCCACATTATACACTGTGAATCCGCTTTCGGTTCCACAA
ACAAAACATGAGCGGTTGTAATTGACGCTCAAAAAGCGCACGTCTTTATT
CTGAGCCATTGTTCTTCGAGTGTTTtagttcatttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002681XLOC_002681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004734-exon-sc0000048-1491911889:59637..60230TCONS_00004734-exon-sc0000048-1491911889:59637..60230Clytia hemisphaericaexon
TCONS_00004734-exon-sc0000048-1510915933:59637..60230TCONS_00004734-exon-sc0000048-1510915933:59637..60230Clytia hemisphaericaexon
TCONS_00004734-exon-sc0000048-1575043694:59637..60230TCONS_00004734-exon-sc0000048-1575043694:59637..60230Clytia hemisphaericaexon
TCONS_00004734-exon-sc0000048-1491911889:62565..63376TCONS_00004734-exon-sc0000048-1491911889:62565..63376Clytia hemisphaericaexon
TCONS_00004734-exon-sc0000048-1510915933:62565..63376TCONS_00004734-exon-sc0000048-1510915933:62565..63376Clytia hemisphaericaexon
TCONS_00004734-exon-sc0000048-1575043694:62565..63376TCONS_00004734-exon-sc0000048-1575043694:62565..63376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:59637..63376 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.80105	1.76749	0.59872	1.12811	1.05251	0.821902	0.921728	1.18421	0.95115	1.38919	2.06961	1.54676	0.546162	1.21819	1.34609	0.994455	1.5463	1.11716	0	0.127605	0.245004	0.703937	3.51732	4.21921	0.709577	1.77914	0.187652	0.000141509	3.71428	1.91296
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR020683Ankyrin_rpt-contain_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00004734 vs. Swiss-Prot (Human)
Match: WIPI4 (WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.371e-95
Identity = 144/274 (52.55%), Postives = 198/274 (72.26%), Query Frame = -2 
Query:  560 KDVRFLSVNYNRSCFVCGTESGFTVYNVEPLANVLRQDVPDCGGIGQVHMLNRSNLFALVGSGRHMKYAKNRVVIWDG------NLKKPVFEYTFCSPVLNVRLRKNMILVVLQKKLYAYSFPNDSTQLFCYDTRDNPRGLCELSVAIDSQMCVFPGPKSGSIQLVDLDVSKIGLSSTPCLINAHQHDIACIAMNQLGTYVATASKKGTLIRVFEIKTRRQLIELRRGTDPASLYCLNFSPDSSYLCAASDKGTVHIFAVKEHKYSSTGELAIV 1363
            + V  L  N ++SCF C  E+G  +YNVEPL      D    G +G V ML+RSNL ALVG G   K+++  V+IWD       + +K V E+TF  PVL+VR+R + I++VL+ ++Y YSFP++  +LF +DTRDNP+GLC+L  +++ Q+ VFPG K GS+QLVDL  +K G SS P  INAHQ DIAC+++NQ GT VA+AS+KGTLIR+F+ +++ +L+ELRRGTDPA+LYC+NFS DSS+LCA+SDKGTVHIFA+K+ + +    LA V
Sbjct:    7 RGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARV 280
The following BLAST results are available for this feature:
BLAST of TCONS_00004734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WIPI42.371e-9552.55WD repeat domain phosphoinositide-interacting prot... [more]
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